Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0093

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0091 and Psest_0092 are separated by 11 nucleotidesPsest_0092 and Psest_0093 overlap by 4 nucleotidesPsest_0093 and Psest_0094 overlap by 4 nucleotides Psest_0091: Psest_0091 - phosphonate C-P lyase system protein PhnL, at 92,087 to 92,791 _0091 Psest_0092: Psest_0092 - phosphonate C-P lyase system protein PhnK, at 92,803 to 93,615 _0092 Psest_0093: Psest_0093 - Uncharacterized enzyme of phosphonate metabolism, at 93,612 to 94,481 _0093 Psest_0094: Psest_0094 - Uncharacterized enzyme of phosphonate metabolism, at 94,478 to 95,587 _0094 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1 2 3at 92.620 kb on - strand, within Psest_0091at 92.838 kb on + strandat 92.839 kb on - strandat 92.839 kb on - strandat 92.840 kb on + strandat 93.386 kb on + strand, within Psest_0092at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093at 93.809 kb on - strand, within Psest_0093at 93.809 kb on - strand, within Psest_0093at 93.923 kb on - strand, within Psest_0093at 93.952 kb on + strand, within Psest_0093at 93.953 kb on - strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.444 kb on + strandat 94.444 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.585 kb on - strandat 94.585 kb on - strandat 94.585 kb on - strandat 94.585 kb on - strandat 95.217 kb on + strand, within Psest_0094at 95.217 kb on + strand, within Psest_0094at 95.218 kb on - strand, within Psest_0094at 95.218 kb on - strand, within Psest_0094at 95.218 kb on - strand, within Psest_0094

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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92,620 - Psest_0091 0.76 -0.3
92,838 + +0.2
92,839 - -0.7
92,839 - -0.8
92,840 + +1.0
93,386 + Psest_0092 0.72 -0.7
93,715 + Psest_0093 0.12 -1.1
93,715 + Psest_0093 0.12 -0.5
93,715 + Psest_0093 0.12 +1.1
93,809 - Psest_0093 0.23 -0.2
93,809 - Psest_0093 0.23 +1.2
93,923 - Psest_0093 0.36 +1.5
93,952 + Psest_0093 0.39 +0.7
93,953 - Psest_0093 0.39 +0.9
94,096 + Psest_0093 0.56 -0.3
94,096 + Psest_0093 0.56 -1.3
94,096 + Psest_0093 0.56 +2.8
94,444 + -1.0
94,444 + -1.8
94,584 + +1.3
94,584 + +1.5
94,584 + +1.6
94,584 + -0.6
94,585 - +1.0
94,585 - +1.5
94,585 - -1.6
94,585 - +0.9
95,217 + Psest_0094 0.67 -0.5
95,217 + Psest_0094 0.67 +0.5
95,218 - Psest_0094 0.67 +0.1
95,218 - Psest_0094 0.67 -0.4
95,218 - Psest_0094 0.67 +0.1

Or see this region's nucleotide sequence