Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0564

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0562 and Psest_0563 are separated by 105 nucleotidesPsest_0563 and Psest_0564 are separated by 166 nucleotidesPsest_0564 and Psest_0565 overlap by 1 nucleotides Psest_0562: Psest_0562 - magnesium-translocating P-type ATPase, at 615,249 to 618,797 _0562 Psest_0563: Psest_0563 - urea ABC transporter, ATP-binding protein UrtE, at 618,903 to 619,601 _0563 Psest_0564: Psest_0564 - urea ABC transporter, ATP-binding protein UrtD, at 619,768 to 620,619 _0564 Psest_0565: Psest_0565 - urea ABC transporter, permease protein UrtC, at 620,619 to 621,695 _0565 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 618.786 kb on + strandat 618.786 kb on + strandat 618.786 kb on + strandat 618.786 kb on + strandat 618.787 kb on - strandat 618.904 kb on + strandat 618.904 kb on + strandat 618.905 kb on - strandat 618.905 kb on - strandat 618.905 kb on - strandat 618.905 kb on - strandat 618.905 kb on - strandat 618.924 kb on + strandat 618.924 kb on + strandat 618.924 kb on + strandat 618.924 kb on + strandat 618.924 kb on + strandat 618.924 kb on + strandat 618.924 kb on + strandat 618.924 kb on + strandat 618.925 kb on - strandat 618.991 kb on + strand, within Psest_0563at 619.021 kb on + strand, within Psest_0563at 619.021 kb on + strand, within Psest_0563at 619.022 kb on - strand, within Psest_0563at 619.252 kb on + strand, within Psest_0563at 619.252 kb on + strand, within Psest_0563at 619.252 kb on + strand, within Psest_0563at 619.252 kb on + strand, within Psest_0563at 619.253 kb on - strand, within Psest_0563at 619.364 kb on - strand, within Psest_0563at 619.364 kb on - strand, within Psest_0563at 619.573 kb on + strandat 619.573 kb on + strandat 619.574 kb on - strandat 619.639 kb on + strandat 619.639 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.644 kb on - strandat 619.654 kb on + strandat 619.655 kb on - strandat 619.693 kb on + strandat 619.693 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.781 kb on + strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 619.782 kb on - strandat 620.429 kb on + strand, within Psest_0564at 620.430 kb on - strand, within Psest_0564at 620.609 kb on - strandat 620.666 kb on - strandat 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 620.878 kb on + strand, within Psest_0565at 621.037 kb on + strand, within Psest_0565at 621.038 kb on - strand, within Psest_0565at 621.038 kb on - strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.223 kb on + strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.224 kb on - strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.412 kb on + strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.413 kb on - strand, within Psest_0565at 621.551 kb on - strand, within Psest_0565

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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618,786 + +0.4
618,786 + +0.9
618,786 + -0.8
618,786 + -2.1
618,787 - -2.6
618,904 + -1.1
618,904 + +0.9
618,905 - -0.6
618,905 - -2.0
618,905 - +0.6
618,905 - +1.4
618,905 - -0.3
618,924 + -0.2
618,924 + -0.1
618,924 + -0.9
618,924 + +1.0
618,924 + +0.0
618,924 + +0.4
618,924 + -3.3
618,924 + -0.2
618,925 - -0.3
618,991 + Psest_0563 0.13 +0.8
619,021 + Psest_0563 0.17 -0.8
619,021 + Psest_0563 0.17 -0.7
619,022 - Psest_0563 0.17 +1.0
619,252 + Psest_0563 0.50 +0.1
619,252 + Psest_0563 0.50 +0.3
619,252 + Psest_0563 0.50 -0.1
619,252 + Psest_0563 0.50 -0.7
619,253 - Psest_0563 0.50 +0.1
619,364 - Psest_0563 0.66 +0.5
619,364 - Psest_0563 0.66 +0.4
619,573 + +0.0
619,573 + -0.9
619,574 - +0.2
619,639 + -1.3
619,639 + +2.2
619,643 + -0.5
619,643 + +0.1
619,643 + +0.8
619,643 + +0.5
619,644 - -0.7
619,654 + +0.0
619,655 - -1.2
619,693 + -2.6
619,693 + +0.3
619,781 + +0.8
619,781 + -0.2
619,781 + -0.3
619,781 + -0.3
619,781 + -0.7
619,782 - +0.0
619,782 - +1.0
619,782 - -1.5
619,782 - -0.0
619,782 - -0.6
619,782 - -2.2
620,429 + Psest_0564 0.78 +2.9
620,430 - Psest_0564 0.78 +2.2
620,609 - -0.1
620,666 - +0.0
620,878 + Psest_0565 0.24 -0.3
620,878 + Psest_0565 0.24 -0.4
620,878 + Psest_0565 0.24 +1.9
620,878 + Psest_0565 0.24 -0.2
620,878 + Psest_0565 0.24 +2.7
620,878 + Psest_0565 0.24 +2.3
621,037 + Psest_0565 0.39 +1.1
621,038 - Psest_0565 0.39 -1.2
621,038 - Psest_0565 0.39 +0.2
621,223 + Psest_0565 0.56 -0.4
621,223 + Psest_0565 0.56 -0.5
621,223 + Psest_0565 0.56 -0.5
621,223 + Psest_0565 0.56 -0.4
621,224 - Psest_0565 0.56 -1.1
621,224 - Psest_0565 0.56 +1.5
621,224 - Psest_0565 0.56 -0.3
621,224 - Psest_0565 0.56 +0.0
621,224 - Psest_0565 0.56 -0.7
621,224 - Psest_0565 0.56 -0.5
621,412 + Psest_0565 0.74 -1.2
621,412 + Psest_0565 0.74 -1.5
621,412 + Psest_0565 0.74 -1.2
621,412 + Psest_0565 0.74 -1.3
621,412 + Psest_0565 0.74 +0.9
621,412 + Psest_0565 0.74 -1.2
621,412 + Psest_0565 0.74 -0.2
621,412 + Psest_0565 0.74 +1.3
621,412 + Psest_0565 0.74 -1.7
621,412 + Psest_0565 0.74 -0.0
621,412 + Psest_0565 0.74 +2.0
621,412 + Psest_0565 0.74 -0.6
621,413 - Psest_0565 0.74 -0.1
621,413 - Psest_0565 0.74 -0.4
621,413 - Psest_0565 0.74 +1.6
621,413 - Psest_0565 0.74 -0.3
621,413 - Psest_0565 0.74 -2.6
621,413 - Psest_0565 0.74 -0.9
621,551 - Psest_0565 0.87 -0.4

Or see this region's nucleotide sequence