Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0557

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0556 and Psest_0557 are separated by 368 nucleotidesPsest_0557 and Psest_0558 are separated by 116 nucleotidesPsest_0558 and Psest_0559 overlap by 4 nucleotidesPsest_0559 and Psest_0560 are separated by 1 nucleotides Psest_0556: Psest_0556 - Curlin associated repeat., at 609,996 to 610,724 _0556 Psest_0557: Psest_0557 - Urease (EC 3.5.1.5) (from data), at 611,093 to 612,793 _0557 Psest_0558: Psest_0558 - urease, beta subunit, at 612,910 to 613,215 _0558 Psest_0559: Psest_0559 - Sortase and related acyltransferases, at 613,212 to 613,775 _0559 Psest_0560: Psest_0560 - Urease (EC 3.5.1.5) (from data), at 613,777 to 614,079 _0560 Position (kb) 611 612 613Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 610.429 kb on + strand, within Psest_0556at 610.430 kb on - strand, within Psest_0556at 610.573 kb on + strand, within Psest_0556at 610.573 kb on + strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.606 kb on + strand, within Psest_0556at 610.869 kb on - strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 611.106 kb on + strandat 611.106 kb on + strandat 611.107 kb on - strandat 611.175 kb on + strandat 611.175 kb on + strandat 611.175 kb on + strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.209 kb on - strandat 611.255 kb on + strandat 611.329 kb on + strand, within Psest_0557at 611.329 kb on + strand, within Psest_0557at 611.330 kb on - strand, within Psest_0557at 611.330 kb on - strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.589 kb on + strand, within Psest_0557at 611.590 kb on - strand, within Psest_0557at 611.590 kb on - strand, within Psest_0557at 611.590 kb on - strand, within Psest_0557at 611.985 kb on + strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 611.986 kb on - strand, within Psest_0557at 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.681 kb on + strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.682 kb on - strandat 612.771 kb on + strandat 612.772 kb on - strandat 613.097 kb on + strand, within Psest_0558at 613.331 kb on + strand, within Psest_0559at 613.331 kb on + strand, within Psest_0559at 613.332 kb on - strand, within Psest_0559at 613.332 kb on - strand, within Psest_0559at 613.462 kb on + strand, within Psest_0559at 613.462 kb on + strand, within Psest_0559at 613.463 kb on - strand, within Psest_0559at 613.526 kb on - strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.669 kb on + strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.670 kb on - strand, within Psest_0559at 613.673 kb on + strand, within Psest_0559at 613.673 kb on + strand, within Psest_0559at 613.673 kb on + strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.674 kb on - strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.713 kb on + strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.714 kb on - strand, within Psest_0559at 613.759 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
610,429 + Psest_0556 0.59 -0.5
610,430 - Psest_0556 0.60 +0.7
610,573 + Psest_0556 0.79 +0.3
610,573 + Psest_0556 0.79 -0.4
610,574 - Psest_0556 0.79 -0.3
610,574 - Psest_0556 0.79 +1.9
610,574 - Psest_0556 0.79 -0.6
610,574 - Psest_0556 0.79 -0.9
610,574 - Psest_0556 0.79 +1.6
610,579 + Psest_0556 0.80 +0.8
610,579 + Psest_0556 0.80 +1.1
610,579 + Psest_0556 0.80 +2.0
610,579 + Psest_0556 0.80 -1.2
610,579 + Psest_0556 0.80 -1.1
610,579 + Psest_0556 0.80 -1.8
610,579 + Psest_0556 0.80 -0.1
610,579 + Psest_0556 0.80 +0.4
610,579 + Psest_0556 0.80 -0.2
610,579 + Psest_0556 0.80 +2.2
610,579 + Psest_0556 0.80 -0.5
610,580 - Psest_0556 0.80 -0.6
610,580 - Psest_0556 0.80 -0.3
610,580 - Psest_0556 0.80 +1.5
610,580 - Psest_0556 0.80 -0.6
610,580 - Psest_0556 0.80 -2.0
610,580 - Psest_0556 0.80 +0.6
610,580 - Psest_0556 0.80 -0.1
610,606 + Psest_0556 0.84 +0.4
610,869 - -0.1
610,902 + +0.9
610,902 + -2.1
610,902 + -0.5
610,902 + -0.6
610,902 + -0.1
610,903 - -0.5
610,903 - +0.4
610,903 - -0.1
610,903 - -0.7
610,903 - +0.8
610,906 + +0.3
610,906 + +2.3
610,906 + -0.5
610,906 + +0.3
610,906 + +1.7
610,906 + +3.3
610,906 + -0.2
610,906 + -2.2
610,906 + -0.2
610,907 - -0.8
610,907 - -1.0
610,907 - +0.4
610,907 - -0.5
610,907 - +1.0
610,907 - +0.6
611,106 + +1.3
611,106 + -1.3
611,107 - +0.1
611,175 + +0.1
611,175 + -1.5
611,175 + -0.5
611,176 - +0.2
611,176 - -0.1
611,176 - +0.9
611,176 - +2.3
611,176 - +1.7
611,176 - -1.3
611,209 - +0.5
611,255 + -0.2
611,329 + Psest_0557 0.14 -0.2
611,329 + Psest_0557 0.14 +0.4
611,330 - Psest_0557 0.14 +1.3
611,330 - Psest_0557 0.14 +0.3
611,577 + Psest_0557 0.28 -1.2
611,577 + Psest_0557 0.28 +2.6
611,577 + Psest_0557 0.28 -2.1
611,577 + Psest_0557 0.28 +0.4
611,577 + Psest_0557 0.28 +0.5
611,577 + Psest_0557 0.28 -0.4
611,577 + Psest_0557 0.28 -0.3
611,578 - Psest_0557 0.29 +0.2
611,578 - Psest_0557 0.29 +0.4
611,578 - Psest_0557 0.29 +0.9
611,578 - Psest_0557 0.29 +0.9
611,578 - Psest_0557 0.29 +3.2
611,578 - Psest_0557 0.29 -0.7
611,578 - Psest_0557 0.29 +2.0
611,578 - Psest_0557 0.29 +0.2
611,578 - Psest_0557 0.29 +2.0
611,589 + Psest_0557 0.29 -0.5
611,590 - Psest_0557 0.29 -2.5
611,590 - Psest_0557 0.29 -1.4
611,590 - Psest_0557 0.29 -1.5
611,985 + Psest_0557 0.52 -0.8
611,986 - Psest_0557 0.52 -0.3
611,986 - Psest_0557 0.52 +0.4
611,986 - Psest_0557 0.52 +0.1
611,986 - Psest_0557 0.52 -1.6
612,681 + +0.5
612,681 + +1.3
612,681 + -0.5
612,681 + +1.5
612,681 + -1.4
612,681 + -0.8
612,682 - -1.3
612,682 - +1.8
612,682 - -2.8
612,682 - +2.1
612,682 - -2.4
612,682 - -1.8
612,682 - -1.2
612,682 - -1.0
612,682 - +0.1
612,682 - +0.6
612,771 + +0.0
612,772 - -0.7
613,097 + Psest_0558 0.61 +0.1
613,331 + Psest_0559 0.21 +0.2
613,331 + Psest_0559 0.21 -0.9
613,332 - Psest_0559 0.21 -1.3
613,332 - Psest_0559 0.21 -0.5
613,462 + Psest_0559 0.44 +0.9
613,462 + Psest_0559 0.44 +1.0
613,463 - Psest_0559 0.45 +2.1
613,526 - Psest_0559 0.56 +0.3
613,669 + Psest_0559 0.81 +2.3
613,669 + Psest_0559 0.81 -0.9
613,669 + Psest_0559 0.81 -0.7
613,669 + Psest_0559 0.81 -0.4
613,669 + Psest_0559 0.81 +0.8
613,669 + Psest_0559 0.81 +1.3
613,670 - Psest_0559 0.81 -0.9
613,670 - Psest_0559 0.81 +1.6
613,670 - Psest_0559 0.81 -0.1
613,670 - Psest_0559 0.81 +0.8
613,670 - Psest_0559 0.81 -1.2
613,670 - Psest_0559 0.81 +0.5
613,670 - Psest_0559 0.81 +2.0
613,670 - Psest_0559 0.81 +0.2
613,673 + Psest_0559 0.82 -0.5
613,673 + Psest_0559 0.82 -0.8
613,673 + Psest_0559 0.82 -1.0
613,674 - Psest_0559 0.82 -0.6
613,674 - Psest_0559 0.82 +2.3
613,674 - Psest_0559 0.82 +0.7
613,674 - Psest_0559 0.82 +0.2
613,674 - Psest_0559 0.82 -1.6
613,713 + Psest_0559 0.89 -0.2
613,713 + Psest_0559 0.89 +1.3
613,713 + Psest_0559 0.89 +1.0
613,713 + Psest_0559 0.89 +0.5
613,713 + Psest_0559 0.89 +0.6
613,713 + Psest_0559 0.89 +1.4
613,714 - Psest_0559 0.89 +2.2
613,714 - Psest_0559 0.89 -2.1
613,714 - Psest_0559 0.89 -1.0
613,714 - Psest_0559 0.89 +1.5
613,714 - Psest_0559 0.89 -0.7
613,714 - Psest_0559 0.89 -0.9
613,714 - Psest_0559 0.89 +0.9
613,714 - Psest_0559 0.89 +0.0
613,759 + -0.3

Or see this region's nucleotide sequence