Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4195

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_4193 and Psest_4194 are separated by 66 nucleotidesPsest_4194 and Psest_4195 are separated by 2 nucleotidesPsest_4195 and Psest_4196 are separated by 3 nucleotidesPsest_4196 and Psest_4197 overlap by 4 nucleotides Psest_4193: Psest_4193 - Predicted signal transduction protein, at 4,371,816 to 4,373,219 _4193 Psest_4194: Psest_4194 - Type II secretory pathway, component PulM, at 4,373,286 to 4,373,798 _4194 Psest_4195: Psest_4195 - general secretion pathway protein L, at 4,373,801 to 4,374,934 _4195 Psest_4196: Psest_4196 - Type II secretory pathway, component PulK, at 4,374,938 to 4,375,927 _4196 Psest_4197: Psest_4197 - general secretion pathway protein J, at 4,375,924 to 4,376,637 _4197 Position (kb) 4373 4374 4375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4372.801 kb on - strand, within Psest_4193at 4372.801 kb on - strand, within Psest_4193at 4372.801 kb on - strand, within Psest_4193at 4373.001 kb on + strand, within Psest_4193at 4373.123 kb on + strandat 4373.124 kb on - strandat 4373.124 kb on - strandat 4373.126 kb on + strandat 4373.127 kb on - strandat 4373.182 kb on + strandat 4373.182 kb on + strandat 4373.410 kb on + strand, within Psest_4194at 4373.410 kb on + strand, within Psest_4194at 4373.410 kb on + strand, within Psest_4194at 4373.411 kb on - strand, within Psest_4194at 4373.411 kb on - strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.587 kb on + strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.588 kb on - strand, within Psest_4194at 4373.614 kb on + strand, within Psest_4194at 4373.618 kb on - strand, within Psest_4194at 4373.668 kb on + strand, within Psest_4194at 4373.668 kb on + strand, within Psest_4194at 4373.668 kb on + strand, within Psest_4194at 4373.669 kb on - strand, within Psest_4194at 4373.669 kb on - strand, within Psest_4194at 4373.930 kb on + strand, within Psest_4195at 4373.930 kb on + strand, within Psest_4195at 4373.931 kb on - strand, within Psest_4195at 4373.964 kb on + strand, within Psest_4195at 4373.964 kb on + strand, within Psest_4195at 4373.965 kb on - strand, within Psest_4195at 4373.965 kb on - strand, within Psest_4195at 4373.965 kb on - strand, within Psest_4195at 4374.178 kb on - strand, within Psest_4195at 4374.178 kb on - strand, within Psest_4195at 4374.178 kb on - strand, within Psest_4195at 4374.329 kb on + strand, within Psest_4195at 4374.330 kb on - strand, within Psest_4195at 4374.330 kb on - strand, within Psest_4195at 4374.330 kb on - strand, within Psest_4195at 4374.512 kb on + strand, within Psest_4195at 4374.512 kb on + strand, within Psest_4195at 4374.512 kb on + strand, within Psest_4195at 4374.512 kb on + strand, within Psest_4195at 4374.513 kb on - strand, within Psest_4195at 4374.873 kb on + strandat 4374.939 kb on + strandat 4374.939 kb on + strandat 4374.939 kb on + strandat 4374.939 kb on + strandat 4374.939 kb on + strandat 4375.126 kb on + strand, within Psest_4196at 4375.305 kb on + strand, within Psest_4196at 4375.306 kb on - strand, within Psest_4196at 4375.549 kb on + strand, within Psest_4196at 4375.549 kb on + strand, within Psest_4196

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
4,372,801 - Psest_4193 0.70 -2.1
4,372,801 - Psest_4193 0.70 -1.0
4,372,801 - Psest_4193 0.70 +0.8
4,373,001 + Psest_4193 0.84 -1.6
4,373,123 + +1.8
4,373,124 - +1.0
4,373,124 - +0.4
4,373,126 + +1.2
4,373,127 - -0.0
4,373,182 + -2.4
4,373,182 + -0.4
4,373,410 + Psest_4194 0.24 -1.7
4,373,410 + Psest_4194 0.24 -4.0
4,373,410 + Psest_4194 0.24 +0.7
4,373,411 - Psest_4194 0.24 -2.5
4,373,411 - Psest_4194 0.24 +0.3
4,373,587 + Psest_4194 0.59 -0.7
4,373,587 + Psest_4194 0.59 +0.6
4,373,587 + Psest_4194 0.59 +1.5
4,373,587 + Psest_4194 0.59 -2.5
4,373,587 + Psest_4194 0.59 -1.2
4,373,587 + Psest_4194 0.59 +0.9
4,373,587 + Psest_4194 0.59 +0.5
4,373,587 + Psest_4194 0.59 -0.1
4,373,587 + Psest_4194 0.59 -2.0
4,373,588 - Psest_4194 0.59 +0.7
4,373,588 - Psest_4194 0.59 -0.4
4,373,588 - Psest_4194 0.59 -2.7
4,373,588 - Psest_4194 0.59 -1.7
4,373,588 - Psest_4194 0.59 -0.8
4,373,588 - Psest_4194 0.59 -2.2
4,373,588 - Psest_4194 0.59 -1.2
4,373,588 - Psest_4194 0.59 -1.4
4,373,614 + Psest_4194 0.64 -2.8
4,373,618 - Psest_4194 0.65 +2.1
4,373,668 + Psest_4194 0.74 +1.0
4,373,668 + Psest_4194 0.74 -0.6
4,373,668 + Psest_4194 0.74 -0.9
4,373,669 - Psest_4194 0.75 +1.7
4,373,669 - Psest_4194 0.75 +0.3
4,373,930 + Psest_4195 0.11 +0.8
4,373,930 + Psest_4195 0.11 -0.0
4,373,931 - Psest_4195 0.11 +0.1
4,373,964 + Psest_4195 0.14 -2.5
4,373,964 + Psest_4195 0.14 -0.3
4,373,965 - Psest_4195 0.14 +0.1
4,373,965 - Psest_4195 0.14 -0.4
4,373,965 - Psest_4195 0.14 +0.1
4,374,178 - Psest_4195 0.33 -0.5
4,374,178 - Psest_4195 0.33 -1.9
4,374,178 - Psest_4195 0.33 -2.1
4,374,329 + Psest_4195 0.47 -0.3
4,374,330 - Psest_4195 0.47 -1.2
4,374,330 - Psest_4195 0.47 -0.8
4,374,330 - Psest_4195 0.47 -1.7
4,374,512 + Psest_4195 0.63 -1.8
4,374,512 + Psest_4195 0.63 +1.3
4,374,512 + Psest_4195 0.63 -1.4
4,374,512 + Psest_4195 0.63 +1.1
4,374,513 - Psest_4195 0.63 -1.8
4,374,873 + -0.2
4,374,939 + -0.2
4,374,939 + -0.9
4,374,939 + -1.9
4,374,939 + +0.9
4,374,939 + +0.8
4,375,126 + Psest_4196 0.19 +1.2
4,375,305 + Psest_4196 0.37 +0.9
4,375,306 - Psest_4196 0.37 +0.2
4,375,549 + Psest_4196 0.62 -0.2
4,375,549 + Psest_4196 0.62 +1.7

Or see this region's nucleotide sequence