Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4148

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_4146 and Psest_4147 are separated by 12 nucleotidesPsest_4147 and Psest_4148 overlap by 1 nucleotidesPsest_4148 and Psest_4149 are separated by 14 nucleotidesPsest_4149 and Psest_4150 are separated by 9 nucleotides Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949 _4146 Psest_4147: Psest_4147 - Flagellar basal body L-ring protein, at 4,330,962 to 4,331,630 _4147 Psest_4148: Psest_4148 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 4,331,630 to 4,332,415 _4148 Psest_4149: Psest_4149 - fagellar hook-basal body proteins, at 4,332,430 to 4,333,158 _4149 Psest_4150: Psest_4150 - fagellar hook-basal body proteins, at 4,333,168 to 4,334,358 _4150 Position (kb) 4331 4332 4333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4330.645 kb on + strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4330.646 kb on - strand, within Psest_4146at 4331.089 kb on + strand, within Psest_4147at 4331.134 kb on + strand, within Psest_4147at 4331.134 kb on + strand, within Psest_4147at 4331.134 kb on + strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.135 kb on - strand, within Psest_4147at 4331.513 kb on - strand, within Psest_4147at 4331.513 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.534 kb on - strand, within Psest_4147at 4331.697 kb on + strandat 4332.075 kb on + strand, within Psest_4148at 4332.075 kb on + strand, within Psest_4148at 4332.075 kb on + strand, within Psest_4148at 4332.075 kb on + strand, within Psest_4148at 4332.076 kb on - strand, within Psest_4148at 4332.076 kb on - strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.279 kb on + strand, within Psest_4148at 4332.280 kb on - strand, within Psest_4148at 4332.280 kb on - strand, within Psest_4148at 4332.280 kb on - strand, within Psest_4148at 4332.420 kb on + strandat 4332.420 kb on + strandat 4332.494 kb on - strandat 4332.589 kb on + strand, within Psest_4149at 4332.589 kb on + strand, within Psest_4149at 4332.589 kb on + strand, within Psest_4149at 4332.767 kb on + strand, within Psest_4149at 4332.866 kb on + strand, within Psest_4149at 4332.866 kb on + strand, within Psest_4149at 4333.014 kb on - strand, within Psest_4149at 4333.142 kb on + strandat 4333.143 kb on - strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.235 kb on + strandat 4333.236 kb on - strandat 4333.236 kb on - strandat 4333.236 kb on - strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.239 kb on + strandat 4333.261 kb on + strandat 4333.261 kb on + strandat 4333.261 kb on + strandat 4333.262 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
4,330,645 + Psest_4146 0.73 +1.9
4,330,646 - Psest_4146 0.73 -1.4
4,330,646 - Psest_4146 0.73 +1.1
4,330,646 - Psest_4146 0.73 +0.4
4,331,089 + Psest_4147 0.19 +1.4
4,331,134 + Psest_4147 0.26 +1.3
4,331,134 + Psest_4147 0.26 -2.6
4,331,134 + Psest_4147 0.26 +0.3
4,331,135 - Psest_4147 0.26 +1.5
4,331,135 - Psest_4147 0.26 -1.7
4,331,135 - Psest_4147 0.26 -0.8
4,331,135 - Psest_4147 0.26 -2.8
4,331,135 - Psest_4147 0.26 +0.5
4,331,513 - Psest_4147 0.82 +1.4
4,331,513 - Psest_4147 0.82 +0.6
4,331,534 - Psest_4147 0.86 +1.0
4,331,534 - Psest_4147 0.86 -0.2
4,331,534 - Psest_4147 0.86 +0.0
4,331,697 + +1.9
4,332,075 + Psest_4148 0.57 +0.4
4,332,075 + Psest_4148 0.57 -0.5
4,332,075 + Psest_4148 0.57 +1.4
4,332,075 + Psest_4148 0.57 -1.0
4,332,076 - Psest_4148 0.57 +0.5
4,332,076 - Psest_4148 0.57 +0.3
4,332,279 + Psest_4148 0.83 +0.4
4,332,279 + Psest_4148 0.83 +0.1
4,332,279 + Psest_4148 0.83 -1.2
4,332,279 + Psest_4148 0.83 +3.3
4,332,280 - Psest_4148 0.83 +1.5
4,332,280 - Psest_4148 0.83 -1.3
4,332,280 - Psest_4148 0.83 +2.0
4,332,420 + -0.8
4,332,420 + +2.2
4,332,494 - -0.5
4,332,589 + Psest_4149 0.22 +0.1
4,332,589 + Psest_4149 0.22 -1.7
4,332,589 + Psest_4149 0.22 -2.0
4,332,767 + Psest_4149 0.46 -1.1
4,332,866 + Psest_4149 0.60 +0.9
4,332,866 + Psest_4149 0.60 +1.2
4,333,014 - Psest_4149 0.80 -1.9
4,333,142 + -1.5
4,333,143 - +1.0
4,333,235 + -1.3
4,333,235 + +0.9
4,333,235 + +1.6
4,333,235 + -0.8
4,333,235 + +1.6
4,333,236 - +0.2
4,333,236 - -1.3
4,333,236 - +0.5
4,333,239 + -0.9
4,333,239 + -0.5
4,333,239 + +1.1
4,333,239 + +0.5
4,333,239 + -0.3
4,333,261 + +0.5
4,333,261 + +1.1
4,333,261 + -0.9
4,333,262 - -2.1

Or see this region's nucleotide sequence