Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3504

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3503 and Psest_3504 are separated by 98 nucleotidesPsest_3504 and Psest_3505 are separated by 184 nucleotides Psest_3503: Psest_3503 - hypothetical protein, at 3,675,154 to 3,677,052 _3503 Psest_3504: Psest_3504 - Predicted acyltransferases, at 3,677,151 to 3,678,218 _3504 Psest_3505: Psest_3505 - Superfamily II DNA and RNA helicases, at 3,678,403 to 3,679,728 _3505 Position (kb) 3677 3678 3679Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3676.390 kb on + strand, within Psest_3503at 3676.390 kb on + strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.529 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.622 kb on - strand, within Psest_3503at 3676.622 kb on - strand, within Psest_3503at 3676.622 kb on - strand, within Psest_3503at 3676.762 kb on + strand, within Psest_3503at 3676.792 kb on + strand, within Psest_3503at 3676.792 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3677.212 kb on + strandat 3677.305 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.436 kb on + strand, within Psest_3504at 3677.436 kb on + strand, within Psest_3504at 3677.437 kb on - strand, within Psest_3504at 3677.440 kb on + strand, within Psest_3504at 3677.440 kb on + strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.442 kb on + strand, within Psest_3504at 3677.442 kb on + strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.570 kb on - strand, within Psest_3504at 3677.570 kb on - strand, within Psest_3504at 3677.570 kb on - strand, within Psest_3504at 3677.587 kb on + strand, within Psest_3504at 3677.593 kb on + strand, within Psest_3504at 3677.758 kb on - strand, within Psest_3504at 3677.863 kb on + strand, within Psest_3504at 3677.864 kb on - strand, within Psest_3504at 3677.887 kb on + strand, within Psest_3504at 3677.888 kb on - strand, within Psest_3504at 3677.888 kb on - strand, within Psest_3504at 3677.888 kb on - strand, within Psest_3504at 3677.891 kb on - strand, within Psest_3504at 3677.928 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.064 kb on + strand, within Psest_3504at 3678.065 kb on - strand, within Psest_3504at 3678.065 kb on - strand, within Psest_3504at 3678.065 kb on - strand, within Psest_3504at 3678.065 kb on - strand, within Psest_3504at 3678.065 kb on - strand, within Psest_3504at 3678.065 kb on - strand, within Psest_3504at 3678.127 kb on + strandat 3678.127 kb on + strandat 3678.128 kb on - strandat 3678.128 kb on - strandat 3678.128 kb on - strandat 3678.316 kb on - strandat 3678.339 kb on + strandat 3678.340 kb on - strandat 3678.742 kb on + strand, within Psest_3505at 3678.742 kb on + strand, within Psest_3505at 3678.742 kb on + strand, within Psest_3505at 3678.742 kb on + strand, within Psest_3505at 3678.742 kb on + strand, within Psest_3505at 3678.742 kb on + strand, within Psest_3505at 3678.742 kb on + strand, within Psest_3505at 3678.743 kb on - strand, within Psest_3505at 3678.743 kb on - strand, within Psest_3505at 3678.743 kb on - strand, within Psest_3505at 3678.743 kb on - strand, within Psest_3505at 3678.743 kb on - strand, within Psest_3505at 3678.743 kb on - strand, within Psest_3505at 3678.743 kb on - strand, within Psest_3505at 3678.746 kb on + strand, within Psest_3505at 3678.746 kb on + strand, within Psest_3505at 3678.747 kb on - strand, within Psest_3505at 3678.747 kb on - strand, within Psest_3505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,676,390 + Psest_3503 0.65 +1.0
3,676,390 + Psest_3503 0.65 -0.7
3,676,391 - Psest_3503 0.65 -1.3
3,676,391 - Psest_3503 0.65 -0.2
3,676,391 - Psest_3503 0.65 +0.2
3,676,391 - Psest_3503 0.65 -0.9
3,676,391 - Psest_3503 0.65 -0.4
3,676,529 + Psest_3503 0.72 -2.1
3,676,621 + Psest_3503 0.77 +1.0
3,676,621 + Psest_3503 0.77 -2.1
3,676,621 + Psest_3503 0.77 +0.6
3,676,621 + Psest_3503 0.77 -1.1
3,676,621 + Psest_3503 0.77 -0.4
3,676,621 + Psest_3503 0.77 +0.6
3,676,621 + Psest_3503 0.77 +0.3
3,676,622 - Psest_3503 0.77 +0.6
3,676,622 - Psest_3503 0.77 -1.9
3,676,622 - Psest_3503 0.77 +1.1
3,676,762 + Psest_3503 0.85 -0.4
3,676,792 + Psest_3503 0.86 -0.6
3,676,792 + Psest_3503 0.86 +1.4
3,676,849 + Psest_3503 0.89 +0.1
3,676,849 + Psest_3503 0.89 +0.5
3,676,849 + Psest_3503 0.89 +1.7
3,676,849 + Psest_3503 0.89 +0.0
3,676,849 + Psest_3503 0.89 -0.6
3,676,849 + Psest_3503 0.89 +0.9
3,677,212 + +1.9
3,677,305 + Psest_3504 0.14 -0.2
3,677,371 + Psest_3504 0.21 -0.0
3,677,371 + Psest_3504 0.21 -2.1
3,677,371 + Psest_3504 0.21 -0.2
3,677,371 + Psest_3504 0.21 -0.2
3,677,371 + Psest_3504 0.21 +0.6
3,677,372 - Psest_3504 0.21 -0.4
3,677,372 - Psest_3504 0.21 -2.6
3,677,372 - Psest_3504 0.21 -0.6
3,677,372 - Psest_3504 0.21 -0.5
3,677,372 - Psest_3504 0.21 -0.5
3,677,372 - Psest_3504 0.21 -0.9
3,677,372 - Psest_3504 0.21 +0.4
3,677,436 + Psest_3504 0.27 -2.2
3,677,436 + Psest_3504 0.27 -0.6
3,677,437 - Psest_3504 0.27 -1.1
3,677,440 + Psest_3504 0.27 -0.2
3,677,440 + Psest_3504 0.27 +2.7
3,677,441 - Psest_3504 0.27 -0.7
3,677,441 - Psest_3504 0.27 -1.0
3,677,441 - Psest_3504 0.27 -0.8
3,677,441 - Psest_3504 0.27 -0.7
3,677,441 - Psest_3504 0.27 -2.7
3,677,441 - Psest_3504 0.27 -0.5
3,677,441 - Psest_3504 0.27 +3.6
3,677,441 - Psest_3504 0.27 -0.5
3,677,442 + Psest_3504 0.27 +0.7
3,677,442 + Psest_3504 0.27 +0.5
3,677,443 - Psest_3504 0.27 +1.3
3,677,443 - Psest_3504 0.27 -0.1
3,677,443 - Psest_3504 0.27 +0.6
3,677,443 - Psest_3504 0.27 +1.2
3,677,443 - Psest_3504 0.27 -1.2
3,677,443 - Psest_3504 0.27 +1.5
3,677,443 - Psest_3504 0.27 -0.5
3,677,443 - Psest_3504 0.27 -1.1
3,677,569 + Psest_3504 0.39 -0.1
3,677,569 + Psest_3504 0.39 -0.1
3,677,569 + Psest_3504 0.39 -0.6
3,677,569 + Psest_3504 0.39 +0.9
3,677,569 + Psest_3504 0.39 +1.3
3,677,569 + Psest_3504 0.39 -1.4
3,677,570 - Psest_3504 0.39 +0.1
3,677,570 - Psest_3504 0.39 -0.5
3,677,570 - Psest_3504 0.39 -1.6
3,677,587 + Psest_3504 0.41 +0.1
3,677,593 + Psest_3504 0.41 -1.3
3,677,758 - Psest_3504 0.57 -0.2
3,677,863 + Psest_3504 0.67 +1.3
3,677,864 - Psest_3504 0.67 -1.5
3,677,887 + Psest_3504 0.69 +0.7
3,677,888 - Psest_3504 0.69 -0.6
3,677,888 - Psest_3504 0.69 +0.8
3,677,888 - Psest_3504 0.69 -0.1
3,677,891 - Psest_3504 0.69 +0.5
3,677,928 + Psest_3504 0.73 -0.7
3,678,064 + Psest_3504 0.85 +2.0
3,678,064 + Psest_3504 0.85 +2.1
3,678,064 + Psest_3504 0.85 -1.5
3,678,064 + Psest_3504 0.85 -2.8
3,678,064 + Psest_3504 0.85 -0.6
3,678,064 + Psest_3504 0.85 -1.3
3,678,064 + Psest_3504 0.85 -0.6
3,678,064 + Psest_3504 0.85 -0.7
3,678,065 - Psest_3504 0.86 +0.1
3,678,065 - Psest_3504 0.86 +0.8
3,678,065 - Psest_3504 0.86 -0.6
3,678,065 - Psest_3504 0.86 -1.5
3,678,065 - Psest_3504 0.86 +0.3
3,678,065 - Psest_3504 0.86 -1.3
3,678,127 + -0.3
3,678,127 + -1.4
3,678,128 - +0.4
3,678,128 - -1.5
3,678,128 - -2.7
3,678,316 - +0.7
3,678,339 + +0.1
3,678,340 - -0.6
3,678,742 + Psest_3505 0.26 -1.3
3,678,742 + Psest_3505 0.26 +0.8
3,678,742 + Psest_3505 0.26 -1.5
3,678,742 + Psest_3505 0.26 -1.2
3,678,742 + Psest_3505 0.26 -0.4
3,678,742 + Psest_3505 0.26 -0.4
3,678,742 + Psest_3505 0.26 +0.4
3,678,743 - Psest_3505 0.26 +1.3
3,678,743 - Psest_3505 0.26 -0.2
3,678,743 - Psest_3505 0.26 -0.6
3,678,743 - Psest_3505 0.26 +0.8
3,678,743 - Psest_3505 0.26 -0.4
3,678,743 - Psest_3505 0.26 -0.5
3,678,743 - Psest_3505 0.26 +1.1
3,678,746 + Psest_3505 0.26 -0.6
3,678,746 + Psest_3505 0.26 +2.0
3,678,747 - Psest_3505 0.26 +0.1
3,678,747 - Psest_3505 0.26 -0.6

Or see this region's nucleotide sequence