Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2980 and Psest_2981 are separated by 22 nucleotides Psest_2981 and Psest_2982 are separated by 140 nucleotides Psest_2982 and Psest_2983 are separated by 335 nucleotides Psest_2983 and Psest_2984 are separated by 51 nucleotides
Psest_2980: Psest_2980 - oxaloacetate decarboxylase alpha subunit, at 3,171,704 to 3,173,482
_2980
Psest_2981: Psest_2981 - sodium pump decarboxylases, gamma subunit, at 3,173,505 to 3,173,747
_2981
Psest_2982: Psest_2982 - Mg2+ transporter (mgtE), at 3,173,888 to 3,175,324
_2982
Psest_2983: Psest_2983 - hypothetical protein, at 3,175,660 to 3,176,142
_2983
Psest_2984: Psest_2984 - tRNA_Arg_ACG, at 3,176,194 to 3,176,270
_2984
Position (kb)
3173
3174
3175
3176 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3172.921 kb on + strand, within Psest_2980 at 3172.922 kb on - strand, within Psest_2980 at 3172.922 kb on - strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3173.037 kb on + strand, within Psest_2980 at 3173.255 kb on - strand, within Psest_2980 at 3173.309 kb on - strand at 3173.309 kb on - strand at 3173.470 kb on + strand at 3173.638 kb on + strand, within Psest_2981 at 3173.638 kb on + strand, within Psest_2981 at 3173.638 kb on + strand, within Psest_2981 at 3173.796 kb on - strand at 3173.889 kb on + strand at 3173.890 kb on - strand at 3175.378 kb on - strand at 3175.378 kb on - strand at 3175.378 kb on - strand at 3175.417 kb on - strand at 3175.472 kb on - strand at 3175.472 kb on - strand at 3175.472 kb on - strand at 3175.472 kb on - strand at 3175.472 kb on - strand at 3175.614 kb on + strand at 3175.614 kb on + strand at 3175.615 kb on - strand at 3175.615 kb on - strand at 3175.668 kb on - strand at 3175.673 kb on + strand at 3175.673 kb on + strand at 3175.673 kb on + strand at 3175.674 kb on - strand at 3175.674 kb on - strand at 3175.694 kb on + strand at 3175.695 kb on - strand at 3176.039 kb on + strand, within Psest_2983 at 3176.039 kb on + strand, within Psest_2983 at 3176.039 kb on + strand, within Psest_2983 at 3176.245 kb on - strand, within Psest_2984 at 3176.263 kb on - strand at 3176.263 kb on - strand at 3176.263 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.273 kb on - strand at 3176.284 kb on - strand at 3176.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,172,921 + Psest_2980 0.68 +0.1 3,172,922 - Psest_2980 0.68 +0.7 3,172,922 - Psest_2980 0.68 -0.5 3,172,923 + Psest_2980 0.69 -1.8 3,172,923 + Psest_2980 0.69 -0.1 3,172,923 + Psest_2980 0.69 -2.5 3,172,923 + Psest_2980 0.69 -1.2 3,172,924 - Psest_2980 0.69 -0.2 3,172,924 - Psest_2980 0.69 -0.5 3,172,924 - Psest_2980 0.69 +0.9 3,172,924 - Psest_2980 0.69 -0.2 3,173,037 + Psest_2980 0.75 +0.1 3,173,255 - Psest_2980 0.87 +0.0 3,173,309 - -0.8 3,173,309 - +1.8 3,173,470 + +0.3 3,173,638 + Psest_2981 0.55 +0.5 3,173,638 + Psest_2981 0.55 -1.7 3,173,638 + Psest_2981 0.55 -1.0 3,173,796 - +1.0 3,173,889 + +2.2 3,173,890 - +1.9 3,175,378 - +0.6 3,175,378 - +0.4 3,175,378 - -0.5 3,175,417 - -1.3 3,175,472 - -1.5 3,175,472 - +0.3 3,175,472 - -0.3 3,175,472 - +1.9 3,175,472 - +0.4 3,175,614 + -1.2 3,175,614 + -2.5 3,175,615 - +0.9 3,175,615 - -1.1 3,175,668 - +1.6 3,175,673 + +3.0 3,175,673 + -2.5 3,175,673 + +1.2 3,175,674 - -0.3 3,175,674 - -1.6 3,175,694 + -0.1 3,175,695 - -2.4 3,176,039 + Psest_2983 0.78 -0.0 3,176,039 + Psest_2983 0.78 -1.0 3,176,039 + Psest_2983 0.78 -0.2 3,176,245 - Psest_2984 0.66 -0.5 3,176,263 - -0.5 3,176,263 - -2.0 3,176,263 - -1.0 3,176,273 - -0.5 3,176,273 - -0.3 3,176,273 - +0.6 3,176,273 - -1.1 3,176,273 - +0.4 3,176,273 - +1.5 3,176,273 - -1.0 3,176,284 - +0.6 3,176,284 - -0.1
Or see this region's nucleotide sequence