Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2678

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2677 and Psest_2678 overlap by 8 nucleotidesPsest_2678 and Psest_2679 are separated by 46 nucleotides Psest_2677: Psest_2677 - ABC-type multidrug transport system, ATPase and permease components, at 2,866,366 to 2,868,144 _2677 Psest_2678: Psest_2678 - Predicted protein-disulfide isomerase, at 2,868,137 to 2,868,766 _2678 Psest_2679: Psest_2679 - Predicted sulfurtransferase, at 2,868,813 to 2,869,748 _2679 Position (kb) 2868 2869Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2867.183 kb on + strand, within Psest_2677at 2867.183 kb on + strand, within Psest_2677at 2867.183 kb on + strand, within Psest_2677at 2867.184 kb on - strand, within Psest_2677at 2867.184 kb on - strand, within Psest_2677at 2867.184 kb on - strand, within Psest_2677at 2867.184 kb on - strand, within Psest_2677at 2867.192 kb on + strand, within Psest_2677at 2867.241 kb on - strand, within Psest_2677at 2867.241 kb on - strand, within Psest_2677at 2867.241 kb on - strand, within Psest_2677at 2867.241 kb on - strand, within Psest_2677at 2867.241 kb on - strand, within Psest_2677at 2867.314 kb on + strand, within Psest_2677at 2867.314 kb on + strand, within Psest_2677at 2867.315 kb on - strand, within Psest_2677at 2867.323 kb on - strand, within Psest_2677at 2867.390 kb on + strand, within Psest_2677at 2867.390 kb on + strand, within Psest_2677at 2867.390 kb on + strand, within Psest_2677at 2867.512 kb on - strand, within Psest_2677at 2867.512 kb on - strand, within Psest_2677at 2867.542 kb on + strand, within Psest_2677at 2867.542 kb on + strand, within Psest_2677at 2867.587 kb on - strand, within Psest_2677at 2867.899 kb on + strand, within Psest_2677at 2867.899 kb on + strand, within Psest_2677at 2867.900 kb on - strand, within Psest_2677at 2867.900 kb on - strand, within Psest_2677at 2867.900 kb on - strand, within Psest_2677at 2867.900 kb on - strand, within Psest_2677at 2867.902 kb on - strand, within Psest_2677at 2867.902 kb on - strand, within Psest_2677at 2867.902 kb on - strand, within Psest_2677at 2867.902 kb on - strand, within Psest_2677at 2867.921 kb on + strand, within Psest_2677at 2867.922 kb on - strand, within Psest_2677at 2867.979 kb on + strandat 2867.979 kb on + strandat 2867.980 kb on - strandat 2867.992 kb on + strandat 2867.992 kb on + strandat 2867.992 kb on + strandat 2868.023 kb on - strandat 2868.417 kb on + strand, within Psest_2678at 2868.417 kb on + strand, within Psest_2678at 2868.417 kb on + strand, within Psest_2678at 2868.417 kb on + strand, within Psest_2678at 2868.417 kb on + strand, within Psest_2678at 2868.417 kb on + strand, within Psest_2678at 2868.418 kb on - strand, within Psest_2678at 2868.455 kb on - strand, within Psest_2678at 2868.455 kb on - strand, within Psest_2678at 2868.455 kb on - strand, within Psest_2678at 2868.586 kb on - strand, within Psest_2678at 2868.750 kb on + strandat 2868.750 kb on + strandat 2868.750 kb on + strandat 2868.750 kb on + strandat 2868.750 kb on + strandat 2868.750 kb on + strandat 2868.750 kb on + strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.751 kb on - strandat 2868.781 kb on - strandat 2868.964 kb on + strand, within Psest_2679at 2868.964 kb on + strand, within Psest_2679at 2869.124 kb on - strand, within Psest_2679at 2869.151 kb on - strand, within Psest_2679at 2869.180 kb on + strand, within Psest_2679at 2869.180 kb on + strand, within Psest_2679at 2869.180 kb on + strand, within Psest_2679at 2869.180 kb on + strand, within Psest_2679at 2869.181 kb on - strand, within Psest_2679at 2869.181 kb on - strand, within Psest_2679at 2869.181 kb on - strand, within Psest_2679at 2869.181 kb on - strand, within Psest_2679at 2869.181 kb on - strand, within Psest_2679at 2869.181 kb on - strand, within Psest_2679at 2869.267 kb on + strand, within Psest_2679at 2869.267 kb on + strand, within Psest_2679at 2869.268 kb on - strand, within Psest_2679at 2869.332 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.411 kb on + strand, within Psest_2679at 2869.412 kb on - strand, within Psest_2679at 2869.412 kb on - strand, within Psest_2679at 2869.514 kb on - strand, within Psest_2679at 2869.693 kb on + strandat 2869.694 kb on - strandat 2869.694 kb on - strandat 2869.718 kb on - strandat 2869.718 kb on - strandat 2869.752 kb on + strandat 2869.752 kb on + strandat 2869.752 kb on + strandat 2869.752 kb on + strandat 2869.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,867,183 + Psest_2677 0.46 +0.1
2,867,183 + Psest_2677 0.46 +0.4
2,867,183 + Psest_2677 0.46 +0.4
2,867,184 - Psest_2677 0.46 -1.1
2,867,184 - Psest_2677 0.46 -0.1
2,867,184 - Psest_2677 0.46 +0.0
2,867,184 - Psest_2677 0.46 -1.3
2,867,192 + Psest_2677 0.46 -1.9
2,867,241 - Psest_2677 0.49 -0.2
2,867,241 - Psest_2677 0.49 -1.7
2,867,241 - Psest_2677 0.49 +0.3
2,867,241 - Psest_2677 0.49 -0.7
2,867,241 - Psest_2677 0.49 +0.9
2,867,314 + Psest_2677 0.53 +0.2
2,867,314 + Psest_2677 0.53 +0.4
2,867,315 - Psest_2677 0.53 +0.1
2,867,323 - Psest_2677 0.54 +1.4
2,867,390 + Psest_2677 0.58 -0.5
2,867,390 + Psest_2677 0.58 -1.5
2,867,390 + Psest_2677 0.58 -2.4
2,867,512 - Psest_2677 0.64 -0.3
2,867,512 - Psest_2677 0.64 +0.4
2,867,542 + Psest_2677 0.66 +0.9
2,867,542 + Psest_2677 0.66 +0.4
2,867,587 - Psest_2677 0.69 +2.9
2,867,899 + Psest_2677 0.86 -0.4
2,867,899 + Psest_2677 0.86 +1.1
2,867,900 - Psest_2677 0.86 -1.8
2,867,900 - Psest_2677 0.86 +0.4
2,867,900 - Psest_2677 0.86 +0.2
2,867,900 - Psest_2677 0.86 -0.5
2,867,902 - Psest_2677 0.86 -1.1
2,867,902 - Psest_2677 0.86 +0.8
2,867,902 - Psest_2677 0.86 +0.5
2,867,902 - Psest_2677 0.86 +0.9
2,867,921 + Psest_2677 0.87 -0.2
2,867,922 - Psest_2677 0.87 +2.4
2,867,979 + -1.2
2,867,979 + -0.6
2,867,980 - -2.7
2,867,992 + -1.4
2,867,992 + +3.6
2,867,992 + +0.4
2,868,023 - -0.4
2,868,417 + Psest_2678 0.44 +0.0
2,868,417 + Psest_2678 0.44 +1.4
2,868,417 + Psest_2678 0.44 +1.6
2,868,417 + Psest_2678 0.44 -1.2
2,868,417 + Psest_2678 0.44 +0.6
2,868,417 + Psest_2678 0.44 +1.5
2,868,418 - Psest_2678 0.45 -0.7
2,868,455 - Psest_2678 0.50 +1.1
2,868,455 - Psest_2678 0.50 +0.9
2,868,455 - Psest_2678 0.50 +1.0
2,868,586 - Psest_2678 0.71 +2.4
2,868,750 + +0.3
2,868,750 + +0.2
2,868,750 + +0.0
2,868,750 + -0.5
2,868,750 + +2.4
2,868,750 + +0.3
2,868,750 + +0.6
2,868,751 - +0.6
2,868,751 - -0.6
2,868,751 - -0.3
2,868,751 - +0.8
2,868,751 - +0.4
2,868,751 - -0.0
2,868,751 - +0.4
2,868,751 - +0.5
2,868,751 - +1.1
2,868,781 - +2.0
2,868,964 + Psest_2679 0.16 +0.3
2,868,964 + Psest_2679 0.16 +0.9
2,869,124 - Psest_2679 0.33 -1.0
2,869,151 - Psest_2679 0.36 -0.9
2,869,180 + Psest_2679 0.39 +0.3
2,869,180 + Psest_2679 0.39 -0.1
2,869,180 + Psest_2679 0.39 +1.2
2,869,180 + Psest_2679 0.39 -0.2
2,869,181 - Psest_2679 0.39 -1.0
2,869,181 - Psest_2679 0.39 +0.6
2,869,181 - Psest_2679 0.39 +0.7
2,869,181 - Psest_2679 0.39 +2.3
2,869,181 - Psest_2679 0.39 +0.8
2,869,181 - Psest_2679 0.39 +0.7
2,869,267 + Psest_2679 0.49 -0.1
2,869,267 + Psest_2679 0.49 +1.2
2,869,268 - Psest_2679 0.49 -1.8
2,869,332 + Psest_2679 0.55 -0.9
2,869,411 + Psest_2679 0.64 -1.2
2,869,411 + Psest_2679 0.64 -2.2
2,869,411 + Psest_2679 0.64 -1.3
2,869,411 + Psest_2679 0.64 +0.9
2,869,411 + Psest_2679 0.64 +0.4
2,869,411 + Psest_2679 0.64 +0.4
2,869,411 + Psest_2679 0.64 -2.1
2,869,411 + Psest_2679 0.64 +1.1
2,869,411 + Psest_2679 0.64 -0.1
2,869,412 - Psest_2679 0.64 -1.3
2,869,412 - Psest_2679 0.64 +0.5
2,869,514 - Psest_2679 0.75 +0.3
2,869,693 + -1.4
2,869,694 - -1.1
2,869,694 - +0.1
2,869,718 - -0.6
2,869,718 - -0.6
2,869,752 + -0.1
2,869,752 + -0.5
2,869,752 + +0.2
2,869,752 + +1.4
2,869,753 - +0.2

Or see this region's nucleotide sequence