Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2609

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2608 and Psest_2609 are separated by 178 nucleotidesPsest_2609 and Psest_2610 are separated by 53 nucleotides Psest_2608: Psest_2608 - hypothetical protein, at 2,790,866 to 2,792,179 _2608 Psest_2609: Psest_2609 - Glycosyltransferase, at 2,792,358 to 2,793,461 _2609 Psest_2610: Psest_2610 - Predicted acyltransferases, at 2,793,515 to 2,794,552 _2610 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2791.514 kb on + strand, within Psest_2608at 2791.514 kb on + strand, within Psest_2608at 2791.514 kb on + strand, within Psest_2608at 2791.515 kb on - strand, within Psest_2608at 2791.515 kb on - strand, within Psest_2608at 2791.515 kb on - strand, within Psest_2608at 2791.623 kb on - strand, within Psest_2608at 2791.623 kb on - strand, within Psest_2608at 2791.692 kb on - strand, within Psest_2608at 2791.692 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.751 kb on + strand, within Psest_2608at 2792.090 kb on - strandat 2792.090 kb on - strandat 2792.090 kb on - strandat 2792.245 kb on + strandat 2792.329 kb on + strandat 2792.545 kb on + strand, within Psest_2609at 2792.545 kb on + strand, within Psest_2609at 2792.545 kb on + strand, within Psest_2609at 2792.546 kb on - strand, within Psest_2609at 2792.546 kb on - strand, within Psest_2609at 2792.546 kb on - strand, within Psest_2609at 2792.631 kb on + strand, within Psest_2609at 2792.632 kb on - strand, within Psest_2609at 2792.632 kb on - strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.688 kb on + strand, within Psest_2609at 2792.689 kb on - strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.713 kb on - strand, within Psest_2609at 2792.713 kb on - strand, within Psest_2609at 2792.713 kb on - strand, within Psest_2609at 2792.800 kb on - strand, within Psest_2609at 2792.902 kb on + strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2793.054 kb on - strand, within Psest_2609at 2793.065 kb on + strand, within Psest_2609at 2793.066 kb on - strand, within Psest_2609at 2793.066 kb on - strand, within Psest_2609at 2793.066 kb on - strand, within Psest_2609at 2793.127 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609at 2793.247 kb on - strand, within Psest_2609at 2793.247 kb on - strand, within Psest_2609at 2793.295 kb on + strand, within Psest_2609at 2793.295 kb on + strand, within Psest_2609at 2793.296 kb on - strand, within Psest_2609at 2793.296 kb on - strand, within Psest_2609at 2793.296 kb on - strand, within Psest_2609at 2793.296 kb on - strand, within Psest_2609at 2793.357 kb on + strandat 2793.561 kb on + strandat 2793.561 kb on + strandat 2793.562 kb on - strandat 2793.604 kb on + strandat 2793.759 kb on - strand, within Psest_2610at 2793.759 kb on - strand, within Psest_2610at 2793.896 kb on + strand, within Psest_2610at 2793.896 kb on + strand, within Psest_2610at 2793.897 kb on - strand, within Psest_2610at 2793.897 kb on - strand, within Psest_2610at 2794.080 kb on - strand, within Psest_2610at 2794.106 kb on + strand, within Psest_2610at 2794.107 kb on - strand, within Psest_2610at 2794.107 kb on - strand, within Psest_2610at 2794.107 kb on - strand, within Psest_2610at 2794.130 kb on + strand, within Psest_2610at 2794.131 kb on - strand, within Psest_2610at 2794.140 kb on - strand, within Psest_2610at 2794.140 kb on - strand, within Psest_2610at 2794.140 kb on - strand, within Psest_2610at 2794.155 kb on - strand, within Psest_2610at 2794.155 kb on - strand, within Psest_2610at 2794.167 kb on + strand, within Psest_2610at 2794.167 kb on + strand, within Psest_2610at 2794.168 kb on - strand, within Psest_2610at 2794.168 kb on - strand, within Psest_2610at 2794.176 kb on + strand, within Psest_2610at 2794.176 kb on + strand, within Psest_2610at 2794.176 kb on + strand, within Psest_2610at 2794.177 kb on - strand, within Psest_2610at 2794.177 kb on - strand, within Psest_2610at 2794.177 kb on - strand, within Psest_2610at 2794.232 kb on + strand, within Psest_2610at 2794.232 kb on + strand, within Psest_2610at 2794.233 kb on - strand, within Psest_2610at 2794.233 kb on - strand, within Psest_2610at 2794.320 kb on - strand, within Psest_2610at 2794.328 kb on + strand, within Psest_2610at 2794.328 kb on + strand, within Psest_2610at 2794.329 kb on - strand, within Psest_2610at 2794.329 kb on - strand, within Psest_2610at 2794.332 kb on + strand, within Psest_2610at 2794.332 kb on + strand, within Psest_2610at 2794.332 kb on + strand, within Psest_2610at 2794.332 kb on + strand, within Psest_2610at 2794.332 kb on + strand, within Psest_2610at 2794.332 kb on + strand, within Psest_2610at 2794.332 kb on + strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610at 2794.333 kb on - strand, within Psest_2610

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,791,514 + Psest_2608 0.49 -2.4
2,791,514 + Psest_2608 0.49 +1.1
2,791,514 + Psest_2608 0.49 +0.8
2,791,515 - Psest_2608 0.49 +1.2
2,791,515 - Psest_2608 0.49 +1.5
2,791,515 - Psest_2608 0.49 +1.6
2,791,623 - Psest_2608 0.58 +1.1
2,791,623 - Psest_2608 0.58 +2.4
2,791,692 - Psest_2608 0.63 +1.8
2,791,692 - Psest_2608 0.63 +1.0
2,791,707 - Psest_2608 0.64 +0.1
2,791,707 - Psest_2608 0.64 +0.0
2,791,707 - Psest_2608 0.64 +0.2
2,791,707 - Psest_2608 0.64 +0.7
2,791,751 + Psest_2608 0.67 +2.1
2,792,090 - +0.8
2,792,090 - +2.1
2,792,090 - -1.5
2,792,245 + +1.6
2,792,329 + +0.9
2,792,545 + Psest_2609 0.17 +2.1
2,792,545 + Psest_2609 0.17 +1.5
2,792,545 + Psest_2609 0.17 +1.4
2,792,546 - Psest_2609 0.17 +0.6
2,792,546 - Psest_2609 0.17 +1.1
2,792,546 - Psest_2609 0.17 +0.8
2,792,631 + Psest_2609 0.25 +0.4
2,792,632 - Psest_2609 0.25 -0.9
2,792,632 - Psest_2609 0.25 +0.7
2,792,667 + Psest_2609 0.28 -1.0
2,792,667 + Psest_2609 0.28 +0.9
2,792,667 + Psest_2609 0.28 +1.1
2,792,667 + Psest_2609 0.28 +0.9
2,792,667 + Psest_2609 0.28 +1.5
2,792,667 + Psest_2609 0.28 +3.5
2,792,668 - Psest_2609 0.28 +1.5
2,792,668 - Psest_2609 0.28 +2.0
2,792,668 - Psest_2609 0.28 +0.4
2,792,668 - Psest_2609 0.28 +3.4
2,792,668 - Psest_2609 0.28 +0.8
2,792,668 - Psest_2609 0.28 +1.3
2,792,668 - Psest_2609 0.28 -1.2
2,792,668 - Psest_2609 0.28 +1.1
2,792,668 - Psest_2609 0.28 +0.8
2,792,668 - Psest_2609 0.28 -0.1
2,792,688 + Psest_2609 0.30 +3.0
2,792,689 - Psest_2609 0.30 +0.5
2,792,712 + Psest_2609 0.32 +1.3
2,792,712 + Psest_2609 0.32 +1.0
2,792,712 + Psest_2609 0.32 +1.8
2,792,712 + Psest_2609 0.32 +1.4
2,792,712 + Psest_2609 0.32 +0.7
2,792,713 - Psest_2609 0.32 +0.7
2,792,713 - Psest_2609 0.32 +1.1
2,792,713 - Psest_2609 0.32 -0.2
2,792,800 - Psest_2609 0.40 +1.9
2,792,902 + Psest_2609 0.49 +2.1
2,792,903 - Psest_2609 0.49 +0.3
2,792,903 - Psest_2609 0.49 -0.1
2,792,903 - Psest_2609 0.49 +0.4
2,792,903 - Psest_2609 0.49 +0.3
2,793,054 - Psest_2609 0.63 +1.4
2,793,065 + Psest_2609 0.64 +1.1
2,793,066 - Psest_2609 0.64 +1.4
2,793,066 - Psest_2609 0.64 +0.6
2,793,066 - Psest_2609 0.64 +0.6
2,793,127 + Psest_2609 0.70 +1.4
2,793,141 + Psest_2609 0.71 +1.2
2,793,141 + Psest_2609 0.71 +1.7
2,793,141 + Psest_2609 0.71 +1.5
2,793,141 + Psest_2609 0.71 +1.7
2,793,141 + Psest_2609 0.71 +1.4
2,793,142 - Psest_2609 0.71 +2.6
2,793,142 - Psest_2609 0.71 +0.9
2,793,142 - Psest_2609 0.71 +1.7
2,793,142 - Psest_2609 0.71 +0.8
2,793,247 - Psest_2609 0.81 +0.4
2,793,247 - Psest_2609 0.81 +1.7
2,793,295 + Psest_2609 0.85 +1.4
2,793,295 + Psest_2609 0.85 +1.7
2,793,296 - Psest_2609 0.85 +0.7
2,793,296 - Psest_2609 0.85 -0.7
2,793,296 - Psest_2609 0.85 +1.2
2,793,296 - Psest_2609 0.85 +0.8
2,793,357 + +1.8
2,793,561 + -1.0
2,793,561 + +0.6
2,793,562 - +0.5
2,793,604 + -1.3
2,793,759 - Psest_2610 0.24 +1.3
2,793,759 - Psest_2610 0.24 -0.2
2,793,896 + Psest_2610 0.37 -0.9
2,793,896 + Psest_2610 0.37 -1.4
2,793,897 - Psest_2610 0.37 +0.5
2,793,897 - Psest_2610 0.37 -0.7
2,794,080 - Psest_2610 0.54 +3.1
2,794,106 + Psest_2610 0.57 -0.5
2,794,107 - Psest_2610 0.57 +2.4
2,794,107 - Psest_2610 0.57 +2.6
2,794,107 - Psest_2610 0.57 -0.1
2,794,130 + Psest_2610 0.59 +0.2
2,794,131 - Psest_2610 0.59 -0.9
2,794,140 - Psest_2610 0.60 +0.4
2,794,140 - Psest_2610 0.60 +0.1
2,794,140 - Psest_2610 0.60 +0.9
2,794,155 - Psest_2610 0.62 -1.1
2,794,155 - Psest_2610 0.62 +1.8
2,794,167 + Psest_2610 0.63 -1.2
2,794,167 + Psest_2610 0.63 +0.3
2,794,168 - Psest_2610 0.63 +0.2
2,794,168 - Psest_2610 0.63 +0.9
2,794,176 + Psest_2610 0.64 -0.4
2,794,176 + Psest_2610 0.64 -0.5
2,794,176 + Psest_2610 0.64 +0.9
2,794,177 - Psest_2610 0.64 -2.2
2,794,177 - Psest_2610 0.64 +0.6
2,794,177 - Psest_2610 0.64 +1.3
2,794,232 + Psest_2610 0.69 -1.2
2,794,232 + Psest_2610 0.69 +1.7
2,794,233 - Psest_2610 0.69 -0.9
2,794,233 - Psest_2610 0.69 +0.9
2,794,320 - Psest_2610 0.78 +2.8
2,794,328 + Psest_2610 0.78 +0.1
2,794,328 + Psest_2610 0.78 -0.2
2,794,329 - Psest_2610 0.78 -0.7
2,794,329 - Psest_2610 0.78 +0.1
2,794,332 + Psest_2610 0.79 -1.1
2,794,332 + Psest_2610 0.79 -0.3
2,794,332 + Psest_2610 0.79 -0.8
2,794,332 + Psest_2610 0.79 +0.2
2,794,332 + Psest_2610 0.79 -1.1
2,794,332 + Psest_2610 0.79 -1.0
2,794,332 + Psest_2610 0.79 +0.2
2,794,333 - Psest_2610 0.79 +1.2
2,794,333 - Psest_2610 0.79 +0.6
2,794,333 - Psest_2610 0.79 +0.6
2,794,333 - Psest_2610 0.79 +0.8
2,794,333 - Psest_2610 0.79 +1.5
2,794,333 - Psest_2610 0.79 +0.5
2,794,333 - Psest_2610 0.79 -1.5
2,794,333 - Psest_2610 0.79 +0.9
2,794,333 - Psest_2610 0.79 +0.2
2,794,333 - Psest_2610 0.79 +0.6
2,794,333 - Psest_2610 0.79 -0.7

Or see this region's nucleotide sequence