Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2608

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2607 and Psest_2608 are separated by 28 nucleotidesPsest_2608 and Psest_2609 are separated by 178 nucleotides Psest_2607: Psest_2607 - hypothetical protein, at 2,789,539 to 2,790,837 _2607 Psest_2608: Psest_2608 - hypothetical protein, at 2,790,866 to 2,792,179 _2608 Psest_2609: Psest_2609 - Glycosyltransferase, at 2,792,358 to 2,793,461 _2609 Position (kb) 2790 2791 2792 2793Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.866 kb on + strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2789.867 kb on - strand, within Psest_2607at 2790.010 kb on + strand, within Psest_2607at 2790.016 kb on + strand, within Psest_2607at 2790.016 kb on + strand, within Psest_2607at 2790.016 kb on + strand, within Psest_2607at 2790.016 kb on + strand, within Psest_2607at 2790.016 kb on + strand, within Psest_2607at 2790.016 kb on + strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.017 kb on - strand, within Psest_2607at 2790.130 kb on + strand, within Psest_2607at 2790.130 kb on + strand, within Psest_2607at 2790.131 kb on - strand, within Psest_2607at 2790.131 kb on - strand, within Psest_2607at 2790.131 kb on - strand, within Psest_2607at 2790.184 kb on + strand, within Psest_2607at 2790.184 kb on + strand, within Psest_2607at 2790.185 kb on - strand, within Psest_2607at 2790.185 kb on - strand, within Psest_2607at 2790.241 kb on + strand, within Psest_2607at 2790.241 kb on + strand, within Psest_2607at 2790.241 kb on + strand, within Psest_2607at 2790.241 kb on + strand, within Psest_2607at 2790.242 kb on - strand, within Psest_2607at 2790.242 kb on - strand, within Psest_2607at 2790.242 kb on - strand, within Psest_2607at 2790.242 kb on - strand, within Psest_2607at 2790.242 kb on - strand, within Psest_2607at 2790.242 kb on - strand, within Psest_2607at 2790.242 kb on - strand, within Psest_2607at 2790.315 kb on - strand, within Psest_2607at 2790.315 kb on - strand, within Psest_2607at 2790.351 kb on - strand, within Psest_2607at 2790.562 kb on + strand, within Psest_2607at 2790.562 kb on + strand, within Psest_2607at 2790.563 kb on - strand, within Psest_2607at 2790.593 kb on + strand, within Psest_2607at 2790.593 kb on + strand, within Psest_2607at 2790.594 kb on - strand, within Psest_2607at 2790.594 kb on - strand, within Psest_2607at 2790.601 kb on + strand, within Psest_2607at 2790.601 kb on + strand, within Psest_2607at 2790.601 kb on + strand, within Psest_2607at 2790.602 kb on - strand, within Psest_2607at 2790.863 kb on + strandat 2790.863 kb on + strandat 2790.863 kb on + strandat 2790.863 kb on + strandat 2790.863 kb on + strandat 2790.864 kb on - strandat 2790.864 kb on - strandat 2790.864 kb on - strandat 2790.864 kb on - strandat 2790.864 kb on - strandat 2791.073 kb on + strand, within Psest_2608at 2791.074 kb on - strand, within Psest_2608at 2791.074 kb on - strand, within Psest_2608at 2791.245 kb on - strand, within Psest_2608at 2791.290 kb on - strand, within Psest_2608at 2791.290 kb on - strand, within Psest_2608at 2791.290 kb on - strand, within Psest_2608at 2791.290 kb on - strand, within Psest_2608at 2791.514 kb on + strand, within Psest_2608at 2791.514 kb on + strand, within Psest_2608at 2791.514 kb on + strand, within Psest_2608at 2791.515 kb on - strand, within Psest_2608at 2791.515 kb on - strand, within Psest_2608at 2791.515 kb on - strand, within Psest_2608at 2791.623 kb on - strand, within Psest_2608at 2791.623 kb on - strand, within Psest_2608at 2791.692 kb on - strand, within Psest_2608at 2791.692 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.707 kb on - strand, within Psest_2608at 2791.751 kb on + strand, within Psest_2608at 2792.090 kb on - strandat 2792.090 kb on - strandat 2792.090 kb on - strandat 2792.245 kb on + strandat 2792.329 kb on + strandat 2792.545 kb on + strand, within Psest_2609at 2792.545 kb on + strand, within Psest_2609at 2792.545 kb on + strand, within Psest_2609at 2792.546 kb on - strand, within Psest_2609at 2792.546 kb on - strand, within Psest_2609at 2792.546 kb on - strand, within Psest_2609at 2792.631 kb on + strand, within Psest_2609at 2792.632 kb on - strand, within Psest_2609at 2792.632 kb on - strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.667 kb on + strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.668 kb on - strand, within Psest_2609at 2792.688 kb on + strand, within Psest_2609at 2792.689 kb on - strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.712 kb on + strand, within Psest_2609at 2792.713 kb on - strand, within Psest_2609at 2792.713 kb on - strand, within Psest_2609at 2792.713 kb on - strand, within Psest_2609at 2792.800 kb on - strand, within Psest_2609at 2792.902 kb on + strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2792.903 kb on - strand, within Psest_2609at 2793.054 kb on - strand, within Psest_2609at 2793.065 kb on + strand, within Psest_2609at 2793.066 kb on - strand, within Psest_2609at 2793.066 kb on - strand, within Psest_2609at 2793.066 kb on - strand, within Psest_2609at 2793.127 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.141 kb on + strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609at 2793.142 kb on - strand, within Psest_2609

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,789,866 + Psest_2607 0.25 -0.5
2,789,866 + Psest_2607 0.25 -0.5
2,789,866 + Psest_2607 0.25 -2.0
2,789,866 + Psest_2607 0.25 +0.5
2,789,866 + Psest_2607 0.25 +0.3
2,789,866 + Psest_2607 0.25 +3.6
2,789,866 + Psest_2607 0.25 -2.0
2,789,866 + Psest_2607 0.25 +1.6
2,789,866 + Psest_2607 0.25 +1.5
2,789,867 - Psest_2607 0.25 +0.7
2,789,867 - Psest_2607 0.25 +0.3
2,789,867 - Psest_2607 0.25 +0.7
2,789,867 - Psest_2607 0.25 +1.9
2,789,867 - Psest_2607 0.25 +1.1
2,789,867 - Psest_2607 0.25 +1.1
2,789,867 - Psest_2607 0.25 +1.6
2,789,867 - Psest_2607 0.25 -1.4
2,789,867 - Psest_2607 0.25 +1.4
2,789,867 - Psest_2607 0.25 +0.9
2,789,867 - Psest_2607 0.25 +0.2
2,789,867 - Psest_2607 0.25 +1.3
2,789,867 - Psest_2607 0.25 -0.2
2,789,867 - Psest_2607 0.25 +0.9
2,789,867 - Psest_2607 0.25 +1.6
2,789,867 - Psest_2607 0.25 +1.5
2,789,867 - Psest_2607 0.25 +1.0
2,789,867 - Psest_2607 0.25 +0.7
2,789,867 - Psest_2607 0.25 +1.3
2,790,010 + Psest_2607 0.36 +1.6
2,790,016 + Psest_2607 0.37 +1.9
2,790,016 + Psest_2607 0.37 +0.0
2,790,016 + Psest_2607 0.37 +0.8
2,790,016 + Psest_2607 0.37 -0.1
2,790,016 + Psest_2607 0.37 -1.0
2,790,016 + Psest_2607 0.37 +0.7
2,790,017 - Psest_2607 0.37 -0.5
2,790,017 - Psest_2607 0.37 -0.4
2,790,017 - Psest_2607 0.37 +1.7
2,790,017 - Psest_2607 0.37 +1.1
2,790,017 - Psest_2607 0.37 +1.5
2,790,017 - Psest_2607 0.37 +1.2
2,790,017 - Psest_2607 0.37 +2.2
2,790,017 - Psest_2607 0.37 +0.9
2,790,130 + Psest_2607 0.45 -2.3
2,790,130 + Psest_2607 0.45 +3.4
2,790,131 - Psest_2607 0.46 +0.5
2,790,131 - Psest_2607 0.46 +0.9
2,790,131 - Psest_2607 0.46 +1.8
2,790,184 + Psest_2607 0.50 -0.4
2,790,184 + Psest_2607 0.50 -0.4
2,790,185 - Psest_2607 0.50 -1.8
2,790,185 - Psest_2607 0.50 +2.7
2,790,241 + Psest_2607 0.54 +1.8
2,790,241 + Psest_2607 0.54 -0.8
2,790,241 + Psest_2607 0.54 +1.4
2,790,241 + Psest_2607 0.54 +0.3
2,790,242 - Psest_2607 0.54 +2.7
2,790,242 - Psest_2607 0.54 +2.3
2,790,242 - Psest_2607 0.54 +0.7
2,790,242 - Psest_2607 0.54 +0.9
2,790,242 - Psest_2607 0.54 +0.6
2,790,242 - Psest_2607 0.54 +0.6
2,790,242 - Psest_2607 0.54 +0.7
2,790,315 - Psest_2607 0.60 +1.1
2,790,315 - Psest_2607 0.60 +2.2
2,790,351 - Psest_2607 0.63 +1.6
2,790,562 + Psest_2607 0.79 +0.2
2,790,562 + Psest_2607 0.79 +0.6
2,790,563 - Psest_2607 0.79 -1.0
2,790,593 + Psest_2607 0.81 -0.9
2,790,593 + Psest_2607 0.81 +0.4
2,790,594 - Psest_2607 0.81 +1.0
2,790,594 - Psest_2607 0.81 +1.4
2,790,601 + Psest_2607 0.82 +1.7
2,790,601 + Psest_2607 0.82 -0.4
2,790,601 + Psest_2607 0.82 -1.5
2,790,602 - Psest_2607 0.82 +0.5
2,790,863 + -0.0
2,790,863 + +0.0
2,790,863 + -1.4
2,790,863 + +0.4
2,790,863 + -0.2
2,790,864 - +0.5
2,790,864 - +1.7
2,790,864 - +0.9
2,790,864 - +1.2
2,790,864 - +1.5
2,791,073 + Psest_2608 0.16 +0.6
2,791,074 - Psest_2608 0.16 +1.3
2,791,074 - Psest_2608 0.16 +1.3
2,791,245 - Psest_2608 0.29 +1.0
2,791,290 - Psest_2608 0.32 +1.9
2,791,290 - Psest_2608 0.32 +0.2
2,791,290 - Psest_2608 0.32 -1.4
2,791,290 - Psest_2608 0.32 +1.3
2,791,514 + Psest_2608 0.49 -2.4
2,791,514 + Psest_2608 0.49 +1.1
2,791,514 + Psest_2608 0.49 +0.8
2,791,515 - Psest_2608 0.49 +1.2
2,791,515 - Psest_2608 0.49 +1.5
2,791,515 - Psest_2608 0.49 +1.6
2,791,623 - Psest_2608 0.58 +1.1
2,791,623 - Psest_2608 0.58 +2.4
2,791,692 - Psest_2608 0.63 +1.8
2,791,692 - Psest_2608 0.63 +1.0
2,791,707 - Psest_2608 0.64 +0.1
2,791,707 - Psest_2608 0.64 +0.0
2,791,707 - Psest_2608 0.64 +0.2
2,791,707 - Psest_2608 0.64 +0.7
2,791,751 + Psest_2608 0.67 +2.1
2,792,090 - +0.8
2,792,090 - +2.1
2,792,090 - -1.5
2,792,245 + +1.6
2,792,329 + +0.9
2,792,545 + Psest_2609 0.17 +2.1
2,792,545 + Psest_2609 0.17 +1.5
2,792,545 + Psest_2609 0.17 +1.4
2,792,546 - Psest_2609 0.17 +0.6
2,792,546 - Psest_2609 0.17 +1.1
2,792,546 - Psest_2609 0.17 +0.8
2,792,631 + Psest_2609 0.25 +0.4
2,792,632 - Psest_2609 0.25 -0.9
2,792,632 - Psest_2609 0.25 +0.7
2,792,667 + Psest_2609 0.28 -1.0
2,792,667 + Psest_2609 0.28 +0.9
2,792,667 + Psest_2609 0.28 +1.1
2,792,667 + Psest_2609 0.28 +0.9
2,792,667 + Psest_2609 0.28 +1.5
2,792,667 + Psest_2609 0.28 +3.5
2,792,668 - Psest_2609 0.28 +1.5
2,792,668 - Psest_2609 0.28 +2.0
2,792,668 - Psest_2609 0.28 +0.4
2,792,668 - Psest_2609 0.28 +3.4
2,792,668 - Psest_2609 0.28 +0.8
2,792,668 - Psest_2609 0.28 +1.3
2,792,668 - Psest_2609 0.28 -1.2
2,792,668 - Psest_2609 0.28 +1.1
2,792,668 - Psest_2609 0.28 +0.8
2,792,668 - Psest_2609 0.28 -0.1
2,792,688 + Psest_2609 0.30 +3.0
2,792,689 - Psest_2609 0.30 +0.5
2,792,712 + Psest_2609 0.32 +1.3
2,792,712 + Psest_2609 0.32 +1.0
2,792,712 + Psest_2609 0.32 +1.8
2,792,712 + Psest_2609 0.32 +1.4
2,792,712 + Psest_2609 0.32 +0.7
2,792,713 - Psest_2609 0.32 +0.7
2,792,713 - Psest_2609 0.32 +1.1
2,792,713 - Psest_2609 0.32 -0.2
2,792,800 - Psest_2609 0.40 +1.9
2,792,902 + Psest_2609 0.49 +2.1
2,792,903 - Psest_2609 0.49 +0.3
2,792,903 - Psest_2609 0.49 -0.1
2,792,903 - Psest_2609 0.49 +0.4
2,792,903 - Psest_2609 0.49 +0.3
2,793,054 - Psest_2609 0.63 +1.4
2,793,065 + Psest_2609 0.64 +1.1
2,793,066 - Psest_2609 0.64 +1.4
2,793,066 - Psest_2609 0.64 +0.6
2,793,066 - Psest_2609 0.64 +0.6
2,793,127 + Psest_2609 0.70 +1.4
2,793,141 + Psest_2609 0.71 +1.2
2,793,141 + Psest_2609 0.71 +1.7
2,793,141 + Psest_2609 0.71 +1.5
2,793,141 + Psest_2609 0.71 +1.7
2,793,141 + Psest_2609 0.71 +1.4
2,793,142 - Psest_2609 0.71 +2.6
2,793,142 - Psest_2609 0.71 +0.9
2,793,142 - Psest_2609 0.71 +1.7
2,793,142 - Psest_2609 0.71 +0.8

Or see this region's nucleotide sequence