Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2561

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2560 and Psest_2561 are separated by 9 nucleotidesPsest_2561 and Psest_2562 are separated by 1 nucleotides Psest_2560: Psest_2560 - Zinc metalloprotease (elastase), at 2,741,818 to 2,742,861 _2560 Psest_2561: Psest_2561 - hypothetical protein, at 2,742,871 to 2,743,203 _2561 Psest_2562: Psest_2562 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,743,205 to 2,745,541 _2562 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2741.981 kb on + strand, within Psest_2560at 2741.982 kb on - strand, within Psest_2560at 2742.093 kb on - strand, within Psest_2560at 2742.103 kb on + strand, within Psest_2560at 2742.103 kb on + strand, within Psest_2560at 2742.103 kb on + strand, within Psest_2560at 2742.104 kb on - strand, within Psest_2560at 2742.104 kb on - strand, within Psest_2560at 2742.104 kb on - strand, within Psest_2560at 2742.104 kb on - strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.124 kb on + strand, within Psest_2560at 2742.125 kb on - strand, within Psest_2560at 2742.125 kb on - strand, within Psest_2560at 2742.125 kb on - strand, within Psest_2560at 2742.125 kb on - strand, within Psest_2560at 2742.125 kb on - strand, within Psest_2560at 2742.125 kb on - strand, within Psest_2560at 2742.125 kb on - strand, within Psest_2560at 2742.199 kb on + strand, within Psest_2560at 2742.353 kb on - strand, within Psest_2560at 2742.353 kb on - strand, within Psest_2560at 2742.353 kb on - strand, within Psest_2560at 2742.529 kb on + strand, within Psest_2560at 2742.529 kb on + strand, within Psest_2560at 2742.529 kb on + strand, within Psest_2560at 2742.618 kb on + strand, within Psest_2560at 2742.618 kb on + strand, within Psest_2560at 2742.619 kb on - strand, within Psest_2560at 2742.646 kb on + strand, within Psest_2560at 2742.647 kb on - strand, within Psest_2560at 2742.647 kb on - strand, within Psest_2560at 2742.674 kb on - strand, within Psest_2560at 2742.848 kb on + strandat 2742.859 kb on + strandat 2742.912 kb on - strand, within Psest_2561at 2743.201 kb on + strandat 2743.337 kb on + strandat 2743.338 kb on - strandat 2743.482 kb on + strand, within Psest_2562at 2743.482 kb on + strand, within Psest_2562at 2743.482 kb on + strand, within Psest_2562at 2743.590 kb on - strand, within Psest_2562at 2743.590 kb on - strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.652 kb on - strand, within Psest_2562at 2743.652 kb on - strand, within Psest_2562at 2743.652 kb on - strand, within Psest_2562at 2743.921 kb on - strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.053 kb on - strand, within Psest_2562at 2744.053 kb on - strand, within Psest_2562at 2744.118 kb on - strand, within Psest_2562

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,741,981 + Psest_2560 0.16 -1.2
2,741,982 - Psest_2560 0.16 -0.3
2,742,093 - Psest_2560 0.26 -0.1
2,742,103 + Psest_2560 0.27 -0.6
2,742,103 + Psest_2560 0.27 -0.4
2,742,103 + Psest_2560 0.27 +0.4
2,742,104 - Psest_2560 0.27 -1.1
2,742,104 - Psest_2560 0.27 +0.8
2,742,104 - Psest_2560 0.27 -0.2
2,742,104 - Psest_2560 0.27 -0.9
2,742,124 + Psest_2560 0.29 -1.2
2,742,124 + Psest_2560 0.29 +0.3
2,742,124 + Psest_2560 0.29 -1.1
2,742,124 + Psest_2560 0.29 +0.3
2,742,124 + Psest_2560 0.29 +3.2
2,742,124 + Psest_2560 0.29 -0.5
2,742,124 + Psest_2560 0.29 -0.1
2,742,124 + Psest_2560 0.29 -1.3
2,742,124 + Psest_2560 0.29 +0.4
2,742,124 + Psest_2560 0.29 -0.1
2,742,125 - Psest_2560 0.29 -1.2
2,742,125 - Psest_2560 0.29 +0.2
2,742,125 - Psest_2560 0.29 -1.4
2,742,125 - Psest_2560 0.29 -0.8
2,742,125 - Psest_2560 0.29 +0.8
2,742,125 - Psest_2560 0.29 -0.5
2,742,125 - Psest_2560 0.29 +2.3
2,742,199 + Psest_2560 0.36 -0.2
2,742,353 - Psest_2560 0.51 +0.2
2,742,353 - Psest_2560 0.51 -1.0
2,742,353 - Psest_2560 0.51 -1.0
2,742,529 + Psest_2560 0.68 +0.6
2,742,529 + Psest_2560 0.68 -0.2
2,742,529 + Psest_2560 0.68 +0.7
2,742,618 + Psest_2560 0.77 +1.0
2,742,618 + Psest_2560 0.77 +1.9
2,742,619 - Psest_2560 0.77 -1.0
2,742,646 + Psest_2560 0.79 -2.4
2,742,647 - Psest_2560 0.79 +1.1
2,742,647 - Psest_2560 0.79 +0.6
2,742,674 - Psest_2560 0.82 -0.0
2,742,848 + -0.4
2,742,859 + -1.2
2,742,912 - Psest_2561 0.12 +1.5
2,743,201 + -0.1
2,743,337 + +0.0
2,743,338 - -0.1
2,743,482 + Psest_2562 0.12 +1.1
2,743,482 + Psest_2562 0.12 +0.3
2,743,482 + Psest_2562 0.12 +1.6
2,743,590 - Psest_2562 0.16 +0.3
2,743,590 - Psest_2562 0.16 -1.9
2,743,651 + Psest_2562 0.19 -0.6
2,743,651 + Psest_2562 0.19 +2.6
2,743,651 + Psest_2562 0.19 -0.4
2,743,651 + Psest_2562 0.19 -0.2
2,743,651 + Psest_2562 0.19 +0.1
2,743,651 + Psest_2562 0.19 -0.0
2,743,651 + Psest_2562 0.19 +0.2
2,743,651 + Psest_2562 0.19 +0.1
2,743,652 - Psest_2562 0.19 +0.7
2,743,652 - Psest_2562 0.19 +0.4
2,743,652 - Psest_2562 0.19 -1.9
2,743,921 - Psest_2562 0.31 -1.7
2,744,052 + Psest_2562 0.36 +1.9
2,744,052 + Psest_2562 0.36 +0.5
2,744,052 + Psest_2562 0.36 +0.1
2,744,052 + Psest_2562 0.36 -0.9
2,744,053 - Psest_2562 0.36 -1.4
2,744,053 - Psest_2562 0.36 -1.4
2,744,118 - Psest_2562 0.39 +0.3

Or see this region's nucleotide sequence