Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2368

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2367 and Psest_2368 are separated by 15 nucleotidesPsest_2368 and Psest_2369 are separated by 64 nucleotidesPsest_2369 and Psest_2370 overlap by 12 nucleotides Psest_2367: Psest_2367 - glutamine synthetase, type III, at 2,520,812 to 2,522,176 _2367 Psest_2368: Psest_2368 - ABC transporter periplasmic binding protein, urea carboxylase region, at 2,522,192 to 2,523,256 _2368 Psest_2369: Psest_2369 - Transcriptional regulator, at 2,523,321 to 2,523,941 _2369 Psest_2370: Psest_2370 - Protein of unknown function (DUF1652)., at 2,523,930 to 2,524,202 _2370 Position (kb) 2522 2523 2524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2521.418 kb on + strand, within Psest_2367at 2521.419 kb on - strand, within Psest_2367at 2521.419 kb on - strand, within Psest_2367at 2521.419 kb on - strand, within Psest_2367at 2521.553 kb on + strand, within Psest_2367at 2521.553 kb on + strand, within Psest_2367at 2521.554 kb on - strand, within Psest_2367at 2521.554 kb on - strand, within Psest_2367at 2521.554 kb on - strand, within Psest_2367at 2521.620 kb on - strand, within Psest_2367at 2521.718 kb on + strand, within Psest_2367at 2521.719 kb on - strand, within Psest_2367at 2521.719 kb on - strand, within Psest_2367at 2521.719 kb on - strand, within Psest_2367at 2521.719 kb on - strand, within Psest_2367at 2521.719 kb on - strand, within Psest_2367at 2521.782 kb on - strand, within Psest_2367at 2521.871 kb on + strand, within Psest_2367at 2521.872 kb on - strand, within Psest_2367at 2521.958 kb on + strand, within Psest_2367at 2521.958 kb on + strand, within Psest_2367at 2521.959 kb on - strand, within Psest_2367at 2521.959 kb on - strand, within Psest_2367at 2521.959 kb on - strand, within Psest_2367at 2521.964 kb on + strand, within Psest_2367at 2521.964 kb on + strand, within Psest_2367at 2521.964 kb on + strand, within Psest_2367at 2522.081 kb on + strandat 2522.081 kb on + strandat 2522.082 kb on - strandat 2522.159 kb on + strandat 2522.160 kb on - strandat 2522.303 kb on + strand, within Psest_2368at 2522.303 kb on + strand, within Psest_2368at 2522.303 kb on + strand, within Psest_2368at 2522.303 kb on + strand, within Psest_2368at 2522.304 kb on - strand, within Psest_2368at 2522.304 kb on - strand, within Psest_2368at 2522.304 kb on - strand, within Psest_2368at 2522.304 kb on - strand, within Psest_2368at 2522.304 kb on - strand, within Psest_2368at 2522.304 kb on - strand, within Psest_2368at 2522.304 kb on - strand, within Psest_2368at 2522.327 kb on + strand, within Psest_2368at 2522.327 kb on + strand, within Psest_2368at 2522.327 kb on + strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.328 kb on - strand, within Psest_2368at 2522.369 kb on + strand, within Psest_2368at 2522.370 kb on - strand, within Psest_2368at 2522.370 kb on - strand, within Psest_2368at 2522.405 kb on + strand, within Psest_2368at 2522.406 kb on - strand, within Psest_2368at 2522.406 kb on - strand, within Psest_2368at 2522.406 kb on - strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.627 kb on + strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.628 kb on - strand, within Psest_2368at 2522.764 kb on - strand, within Psest_2368at 2522.764 kb on - strand, within Psest_2368at 2522.764 kb on - strand, within Psest_2368at 2522.907 kb on - strand, within Psest_2368at 2523.000 kb on - strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.025 kb on + strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.026 kb on - strand, within Psest_2368at 2523.032 kb on + strand, within Psest_2368at 2523.032 kb on + strand, within Psest_2368at 2523.033 kb on - strand, within Psest_2368at 2523.097 kb on - strand, within Psest_2368at 2523.224 kb on + strandat 2523.224 kb on + strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.225 kb on - strandat 2523.403 kb on - strand, within Psest_2369at 2523.462 kb on + strand, within Psest_2369at 2523.462 kb on + strand, within Psest_2369at 2523.492 kb on + strand, within Psest_2369at 2523.493 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2524.042 kb on - strand, within Psest_2370at 2524.153 kb on + strand, within Psest_2370at 2524.154 kb on - strand, within Psest_2370at 2524.154 kb on - strand, within Psest_2370at 2524.156 kb on + strand, within Psest_2370at 2524.157 kb on - strand, within Psest_2370at 2524.237 kb on - strandat 2524.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,521,418 + Psest_2367 0.44 -0.9
2,521,419 - Psest_2367 0.44 -0.0
2,521,419 - Psest_2367 0.44 -0.5
2,521,419 - Psest_2367 0.44 +0.1
2,521,553 + Psest_2367 0.54 -1.3
2,521,553 + Psest_2367 0.54 -0.4
2,521,554 - Psest_2367 0.54 +0.2
2,521,554 - Psest_2367 0.54 +1.1
2,521,554 - Psest_2367 0.54 -0.8
2,521,620 - Psest_2367 0.59 -0.1
2,521,718 + Psest_2367 0.66 +0.1
2,521,719 - Psest_2367 0.66 +0.1
2,521,719 - Psest_2367 0.66 +1.2
2,521,719 - Psest_2367 0.66 -0.1
2,521,719 - Psest_2367 0.66 +2.3
2,521,719 - Psest_2367 0.66 +0.5
2,521,782 - Psest_2367 0.71 +3.2
2,521,871 + Psest_2367 0.78 -1.8
2,521,872 - Psest_2367 0.78 -0.5
2,521,958 + Psest_2367 0.84 -3.6
2,521,958 + Psest_2367 0.84 -1.8
2,521,959 - Psest_2367 0.84 +1.8
2,521,959 - Psest_2367 0.84 +0.3
2,521,959 - Psest_2367 0.84 -1.8
2,521,964 + Psest_2367 0.84 -1.6
2,521,964 + Psest_2367 0.84 -1.9
2,521,964 + Psest_2367 0.84 +1.1
2,522,081 + -1.3
2,522,081 + -0.1
2,522,082 - +0.4
2,522,159 + +1.7
2,522,160 - -2.2
2,522,303 + Psest_2368 0.10 -0.3
2,522,303 + Psest_2368 0.10 +0.5
2,522,303 + Psest_2368 0.10 +2.1
2,522,303 + Psest_2368 0.10 -0.6
2,522,304 - Psest_2368 0.11 +0.6
2,522,304 - Psest_2368 0.11 -0.2
2,522,304 - Psest_2368 0.11 +0.1
2,522,304 - Psest_2368 0.11 +0.8
2,522,304 - Psest_2368 0.11 +0.2
2,522,304 - Psest_2368 0.11 -0.6
2,522,304 - Psest_2368 0.11 -1.5
2,522,327 + Psest_2368 0.13 -0.1
2,522,327 + Psest_2368 0.13 -1.9
2,522,327 + Psest_2368 0.13 +0.7
2,522,328 - Psest_2368 0.13 -1.0
2,522,328 - Psest_2368 0.13 +1.1
2,522,328 - Psest_2368 0.13 -0.0
2,522,328 - Psest_2368 0.13 +0.1
2,522,369 + Psest_2368 0.17 -0.2
2,522,370 - Psest_2368 0.17 -2.1
2,522,370 - Psest_2368 0.17 -3.6
2,522,405 + Psest_2368 0.20 +0.0
2,522,406 - Psest_2368 0.20 +0.3
2,522,406 - Psest_2368 0.20 +0.2
2,522,406 - Psest_2368 0.20 +1.5
2,522,627 + Psest_2368 0.41 +0.2
2,522,627 + Psest_2368 0.41 -0.3
2,522,627 + Psest_2368 0.41 +1.3
2,522,627 + Psest_2368 0.41 +3.0
2,522,628 - Psest_2368 0.41 -0.6
2,522,628 - Psest_2368 0.41 +1.5
2,522,628 - Psest_2368 0.41 +0.9
2,522,628 - Psest_2368 0.41 -0.1
2,522,628 - Psest_2368 0.41 -1.4
2,522,764 - Psest_2368 0.54 +0.1
2,522,764 - Psest_2368 0.54 +1.5
2,522,764 - Psest_2368 0.54 -0.8
2,522,907 - Psest_2368 0.67 +2.1
2,523,000 - Psest_2368 0.76 -0.4
2,523,025 + Psest_2368 0.78 -0.2
2,523,025 + Psest_2368 0.78 +0.3
2,523,025 + Psest_2368 0.78 +0.4
2,523,025 + Psest_2368 0.78 -2.2
2,523,025 + Psest_2368 0.78 +0.9
2,523,025 + Psest_2368 0.78 -2.2
2,523,025 + Psest_2368 0.78 -0.8
2,523,025 + Psest_2368 0.78 +0.9
2,523,025 + Psest_2368 0.78 -1.5
2,523,025 + Psest_2368 0.78 +0.6
2,523,025 + Psest_2368 0.78 +0.9
2,523,025 + Psest_2368 0.78 +0.7
2,523,025 + Psest_2368 0.78 +0.3
2,523,025 + Psest_2368 0.78 +2.6
2,523,025 + Psest_2368 0.78 -1.0
2,523,026 - Psest_2368 0.78 +2.0
2,523,026 - Psest_2368 0.78 -0.7
2,523,026 - Psest_2368 0.78 -1.6
2,523,026 - Psest_2368 0.78 +1.1
2,523,026 - Psest_2368 0.78 +0.5
2,523,026 - Psest_2368 0.78 -1.3
2,523,026 - Psest_2368 0.78 +0.2
2,523,026 - Psest_2368 0.78 +0.7
2,523,026 - Psest_2368 0.78 -1.9
2,523,026 - Psest_2368 0.78 -1.4
2,523,026 - Psest_2368 0.78 +1.2
2,523,026 - Psest_2368 0.78 -0.5
2,523,026 - Psest_2368 0.78 +0.7
2,523,026 - Psest_2368 0.78 +1.8
2,523,026 - Psest_2368 0.78 -1.6
2,523,026 - Psest_2368 0.78 +0.5
2,523,026 - Psest_2368 0.78 -1.2
2,523,026 - Psest_2368 0.78 -0.1
2,523,026 - Psest_2368 0.78 -1.4
2,523,026 - Psest_2368 0.78 +0.2
2,523,026 - Psest_2368 0.78 -0.6
2,523,032 + Psest_2368 0.79 -1.4
2,523,032 + Psest_2368 0.79 +0.3
2,523,033 - Psest_2368 0.79 +0.7
2,523,097 - Psest_2368 0.85 -2.8
2,523,224 + +0.5
2,523,224 + +2.2
2,523,225 - -1.6
2,523,225 - -0.9
2,523,225 - -0.4
2,523,225 - -0.9
2,523,225 - -0.5
2,523,225 - -1.7
2,523,225 - +0.2
2,523,225 - +0.5
2,523,403 - Psest_2369 0.13 -0.2
2,523,462 + Psest_2369 0.23 +1.8
2,523,462 + Psest_2369 0.23 -0.8
2,523,492 + Psest_2369 0.28 -0.2
2,523,493 - Psest_2369 0.28 +0.1
2,523,802 - Psest_2369 0.77 +1.4
2,523,802 - Psest_2369 0.77 -0.3
2,523,802 - Psest_2369 0.77 +0.1
2,523,802 - Psest_2369 0.77 +1.1
2,524,042 - Psest_2370 0.41 -2.0
2,524,153 + Psest_2370 0.82 +1.2
2,524,154 - Psest_2370 0.82 -1.5
2,524,154 - Psest_2370 0.82 -2.0
2,524,156 + Psest_2370 0.83 +0.3
2,524,157 - Psest_2370 0.83 -1.4
2,524,237 - -0.4
2,524,237 - +0.9

Or see this region's nucleotide sequence