Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1936

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1935 and Psest_1936 are separated by 303 nucleotidesPsest_1936 and Psest_1937 are separated by 14 nucleotides Psest_1935: Psest_1935 - hypothetical protein, at 2,047,311 to 2,048,030 _1935 Psest_1936: Psest_1936 - Response regulator with putative antiterminator output domain, at 2,048,334 to 2,048,912 _1936 Psest_1937: Psest_1937 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 2,048,927 to 2,050,147 _1937 Position (kb) 2048 2049Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2047.588 kb on - strand, within Psest_1935at 2047.679 kb on + strand, within Psest_1935at 2047.679 kb on + strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.766 kb on - strand, within Psest_1935at 2048.169 kb on + strandat 2048.169 kb on + strandat 2048.169 kb on + strandat 2048.170 kb on - strandat 2048.426 kb on + strand, within Psest_1936at 2048.427 kb on - strand, within Psest_1936at 2048.427 kb on - strand, within Psest_1936at 2048.428 kb on + strand, within Psest_1936at 2048.428 kb on + strand, within Psest_1936at 2048.429 kb on - strand, within Psest_1936at 2048.603 kb on + strand, within Psest_1936at 2048.617 kb on + strand, within Psest_1936at 2048.617 kb on + strand, within Psest_1936at 2048.617 kb on + strand, within Psest_1936at 2048.617 kb on + strand, within Psest_1936at 2048.618 kb on - strand, within Psest_1936at 2048.618 kb on - strand, within Psest_1936at 2048.618 kb on - strand, within Psest_1936at 2048.618 kb on - strand, within Psest_1936at 2048.618 kb on - strand, within Psest_1936at 2048.709 kb on + strand, within Psest_1936at 2048.710 kb on - strand, within Psest_1936at 2048.710 kb on - strand, within Psest_1936at 2048.715 kb on + strand, within Psest_1936at 2048.715 kb on + strand, within Psest_1936at 2048.731 kb on - strand, within Psest_1936at 2048.731 kb on - strand, within Psest_1936at 2048.805 kb on + strand, within Psest_1936at 2048.805 kb on + strand, within Psest_1936at 2048.805 kb on + strand, within Psest_1936at 2048.805 kb on + strand, within Psest_1936at 2048.806 kb on - strand, within Psest_1936at 2048.806 kb on - strand, within Psest_1936at 2048.913 kb on - strandat 2048.986 kb on - strandat 2049.129 kb on + strand, within Psest_1937at 2049.129 kb on + strand, within Psest_1937at 2049.129 kb on + strand, within Psest_1937at 2049.130 kb on - strand, within Psest_1937at 2049.198 kb on + strand, within Psest_1937at 2049.199 kb on - strand, within Psest_1937at 2049.199 kb on - strand, within Psest_1937at 2049.199 kb on - strand, within Psest_1937at 2049.199 kb on - strand, within Psest_1937at 2049.199 kb on - strand, within Psest_1937at 2049.325 kb on - strand, within Psest_1937at 2049.672 kb on + strand, within Psest_1937at 2049.672 kb on + strand, within Psest_1937at 2049.673 kb on - strand, within Psest_1937at 2049.673 kb on - strand, within Psest_1937at 2049.673 kb on - strand, within Psest_1937at 2049.675 kb on + strand, within Psest_1937at 2049.676 kb on - strand, within Psest_1937at 2049.676 kb on - strand, within Psest_1937at 2049.676 kb on - strand, within Psest_1937at 2049.709 kb on + strand, within Psest_1937at 2049.710 kb on - strand, within Psest_1937

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,047,588 - Psest_1935 0.38 +0.2
2,047,679 + Psest_1935 0.51 +1.0
2,047,679 + Psest_1935 0.51 -0.9
2,047,680 - Psest_1935 0.51 +0.8
2,047,680 - Psest_1935 0.51 -0.2
2,047,680 - Psest_1935 0.51 +1.6
2,047,680 - Psest_1935 0.51 -0.1
2,047,683 + Psest_1935 0.52 +0.8
2,047,683 + Psest_1935 0.52 -0.8
2,047,683 + Psest_1935 0.52 +0.1
2,047,683 + Psest_1935 0.52 -0.1
2,047,683 + Psest_1935 0.52 -0.1
2,047,683 + Psest_1935 0.52 +0.4
2,047,683 + Psest_1935 0.52 -2.1
2,047,684 - Psest_1935 0.52 +0.0
2,047,684 - Psest_1935 0.52 +4.1
2,047,684 - Psest_1935 0.52 -1.5
2,047,684 - Psest_1935 0.52 +0.8
2,047,684 - Psest_1935 0.52 +2.1
2,047,684 - Psest_1935 0.52 -2.7
2,047,684 - Psest_1935 0.52 -2.3
2,047,684 - Psest_1935 0.52 +0.3
2,047,684 - Psest_1935 0.52 -0.9
2,047,684 - Psest_1935 0.52 +0.4
2,047,684 - Psest_1935 0.52 -1.1
2,047,684 - Psest_1935 0.52 +2.4
2,047,684 - Psest_1935 0.52 -0.8
2,047,684 - Psest_1935 0.52 -1.2
2,047,766 - Psest_1935 0.63 -0.9
2,048,169 + +1.0
2,048,169 + +0.2
2,048,169 + +0.7
2,048,170 - -0.2
2,048,426 + Psest_1936 0.16 +3.9
2,048,427 - Psest_1936 0.16 +0.4
2,048,427 - Psest_1936 0.16 +2.0
2,048,428 + Psest_1936 0.16 +1.8
2,048,428 + Psest_1936 0.16 +1.4
2,048,429 - Psest_1936 0.16 +0.8
2,048,603 + Psest_1936 0.46 -1.1
2,048,617 + Psest_1936 0.49 -1.1
2,048,617 + Psest_1936 0.49 -2.1
2,048,617 + Psest_1936 0.49 +2.8
2,048,617 + Psest_1936 0.49 -1.3
2,048,618 - Psest_1936 0.49 -0.3
2,048,618 - Psest_1936 0.49 +0.2
2,048,618 - Psest_1936 0.49 -0.9
2,048,618 - Psest_1936 0.49 -1.0
2,048,618 - Psest_1936 0.49 -0.1
2,048,709 + Psest_1936 0.65 -0.1
2,048,710 - Psest_1936 0.65 +1.2
2,048,710 - Psest_1936 0.65 +1.3
2,048,715 + Psest_1936 0.66 +0.8
2,048,715 + Psest_1936 0.66 +1.1
2,048,731 - Psest_1936 0.69 +0.1
2,048,731 - Psest_1936 0.69 -0.5
2,048,805 + Psest_1936 0.81 +0.5
2,048,805 + Psest_1936 0.81 +0.5
2,048,805 + Psest_1936 0.81 +1.3
2,048,805 + Psest_1936 0.81 +2.8
2,048,806 - Psest_1936 0.82 -1.0
2,048,806 - Psest_1936 0.82 +2.6
2,048,913 - -0.3
2,048,986 - +1.5
2,049,129 + Psest_1937 0.17 +1.7
2,049,129 + Psest_1937 0.17 +2.0
2,049,129 + Psest_1937 0.17 -0.4
2,049,130 - Psest_1937 0.17 +0.3
2,049,198 + Psest_1937 0.22 +0.5
2,049,199 - Psest_1937 0.22 +0.2
2,049,199 - Psest_1937 0.22 +1.8
2,049,199 - Psest_1937 0.22 -0.4
2,049,199 - Psest_1937 0.22 +1.6
2,049,199 - Psest_1937 0.22 -0.1
2,049,325 - Psest_1937 0.33 -0.4
2,049,672 + Psest_1937 0.61 +1.4
2,049,672 + Psest_1937 0.61 +2.2
2,049,673 - Psest_1937 0.61 +2.0
2,049,673 - Psest_1937 0.61 +2.1
2,049,673 - Psest_1937 0.61 -1.2
2,049,675 + Psest_1937 0.61 -0.8
2,049,676 - Psest_1937 0.61 +0.9
2,049,676 - Psest_1937 0.61 -1.1
2,049,676 - Psest_1937 0.61 -1.0
2,049,709 + Psest_1937 0.64 +1.1
2,049,710 - Psest_1937 0.64 -0.5

Or see this region's nucleotide sequence