Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1783

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1779 and Psest_1780 are separated by 27 nucleotidesPsest_1780 and Psest_1781 are separated by 2 nucleotidesPsest_1781 and Psest_1782 are separated by 182 nucleotidesPsest_1782 and Psest_1783 overlap by 4 nucleotidesPsest_1783 and Psest_1784 are separated by 2 nucleotidesPsest_1784 and Psest_1785 are separated by 13 nucleotidesPsest_1785 and Psest_1786 are separated by 82 nucleotides Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164 _1779 Psest_1780: Psest_1780 - hypothetical protein, at 1,878,192 to 1,878,371 _1780 Psest_1781: Psest_1781 - Uncharacterized protein conserved in bacteria, at 1,878,374 to 1,878,664 _1781 Psest_1782: Psest_1782 - Predicted transcriptional regulators, at 1,878,847 to 1,879,164 _1782 Psest_1783: Psest_1783 - Predicted transporter component, at 1,879,161 to 1,879,595 _1783 Psest_1784: Psest_1784 - Predicted transporter component, at 1,879,598 to 1,880,017 _1784 Psest_1785: Psest_1785 - Protein of unknown function (DUF2892)., at 1,880,031 to 1,880,228 _1785 Psest_1786: Psest_1786 - Rhodanese-related sulfurtransferase, at 1,880,311 to 1,880,691 _1786 Position (kb) 1879 1880Strain fitness (log2 ratio) -2 -1 0 1 2at 1878.183 kb on + strandat 1878.381 kb on + strandat 1878.382 kb on - strandat 1878.382 kb on - strandat 1878.676 kb on + strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.729 kb on - strandat 1879.084 kb on + strand, within Psest_1782at 1879.084 kb on + strand, within Psest_1782at 1879.132 kb on + strand, within Psest_1782at 1879.132 kb on + strand, within Psest_1782at 1879.133 kb on - strandat 1879.213 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.489 kb on + strand, within Psest_1783at 1879.490 kb on - strand, within Psest_1783at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.065 kb on + strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.066 kb on - strand, within Psest_1785at 1880.069 kb on + strand, within Psest_1785at 1880.069 kb on + strand, within Psest_1785at 1880.070 kb on - strand, within Psest_1785at 1880.181 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.183 kb on + strand, within Psest_1785at 1880.184 kb on - strand, within Psest_1785at 1880.184 kb on - strand, within Psest_1785at 1880.238 kb on + strandat 1880.238 kb on + strandat 1880.239 kb on - strandat 1880.239 kb on - strandat 1880.239 kb on - strandat 1880.391 kb on + strand, within Psest_1786at 1880.403 kb on - strand, within Psest_1786at 1880.416 kb on + strand, within Psest_1786at 1880.459 kb on + strand, within Psest_1786at 1880.460 kb on - strand, within Psest_1786at 1880.460 kb on - strand, within Psest_1786at 1880.554 kb on - strand, within Psest_1786at 1880.593 kb on - strand, within Psest_1786at 1880.593 kb on - strand, within Psest_1786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
1,878,183 + +0.1
1,878,381 + -0.0
1,878,382 - -0.9
1,878,382 - -1.4
1,878,676 + +2.2
1,878,677 - -0.2
1,878,677 - +0.4
1,878,677 - +0.2
1,878,677 - +0.2
1,878,677 - -2.0
1,878,677 - -0.1
1,878,729 - -0.8
1,879,084 + Psest_1782 0.75 +0.8
1,879,084 + Psest_1782 0.75 +0.2
1,879,132 + Psest_1782 0.90 -1.5
1,879,132 + Psest_1782 0.90 +0.3
1,879,133 - +0.2
1,879,213 + Psest_1783 0.12 +2.3
1,879,489 + Psest_1783 0.75 -0.4
1,879,489 + Psest_1783 0.75 -0.3
1,879,489 + Psest_1783 0.75 -0.6
1,879,489 + Psest_1783 0.75 +2.3
1,879,490 - Psest_1783 0.76 +2.6
1,880,065 + Psest_1785 0.17 -2.5
1,880,065 + Psest_1785 0.17 +2.5
1,880,065 + Psest_1785 0.17 +0.4
1,880,065 + Psest_1785 0.17 -0.5
1,880,065 + Psest_1785 0.17 -0.1
1,880,065 + Psest_1785 0.17 +0.9
1,880,065 + Psest_1785 0.17 +0.6
1,880,066 - Psest_1785 0.18 +0.8
1,880,066 - Psest_1785 0.18 +0.4
1,880,066 - Psest_1785 0.18 -1.2
1,880,066 - Psest_1785 0.18 +0.2
1,880,066 - Psest_1785 0.18 +0.2
1,880,066 - Psest_1785 0.18 +1.0
1,880,066 - Psest_1785 0.18 +0.6
1,880,069 + Psest_1785 0.19 -0.9
1,880,069 + Psest_1785 0.19 +0.5
1,880,070 - Psest_1785 0.20 +1.1
1,880,181 + Psest_1785 0.76 +0.0
1,880,183 + Psest_1785 0.77 +0.1
1,880,183 + Psest_1785 0.77 +0.4
1,880,183 + Psest_1785 0.77 +0.6
1,880,183 + Psest_1785 0.77 -0.7
1,880,183 + Psest_1785 0.77 +1.7
1,880,184 - Psest_1785 0.77 -1.9
1,880,184 - Psest_1785 0.77 -1.1
1,880,238 + +0.1
1,880,238 + -2.1
1,880,239 - -1.5
1,880,239 - -0.7
1,880,239 - -2.1
1,880,391 + Psest_1786 0.21 +0.5
1,880,403 - Psest_1786 0.24 +0.2
1,880,416 + Psest_1786 0.28 +2.1
1,880,459 + Psest_1786 0.39 +0.7
1,880,460 - Psest_1786 0.39 -0.4
1,880,460 - Psest_1786 0.39 +0.7
1,880,554 - Psest_1786 0.64 +1.3
1,880,593 - Psest_1786 0.74 +1.1
1,880,593 - Psest_1786 0.74 -0.3

Or see this region's nucleotide sequence