Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1315

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1314 and Psest_1315 overlap by 14 nucleotidesPsest_1315 and Psest_1316 overlap by 4 nucleotides Psest_1314: Psest_1314 - Putative Zn-dependent protease, at 1,414,756 to 1,416,339 _1314 Psest_1315: Psest_1315 - hypothetical protein, at 1,416,326 to 1,416,628 _1315 Psest_1316: Psest_1316 - Predicted transmembrane sensor domain, at 1,416,625 to 1,417,983 _1316 Position (kb) 1416 1417Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1415.466 kb on + strand, within Psest_1314at 1415.563 kb on + strand, within Psest_1314at 1415.563 kb on + strand, within Psest_1314at 1415.564 kb on - strand, within Psest_1314at 1415.564 kb on - strand, within Psest_1314at 1415.623 kb on + strand, within Psest_1314at 1415.623 kb on + strand, within Psest_1314at 1415.623 kb on + strand, within Psest_1314at 1415.623 kb on + strand, within Psest_1314at 1415.623 kb on + strand, within Psest_1314at 1415.623 kb on + strand, within Psest_1314at 1415.624 kb on - strand, within Psest_1314at 1415.624 kb on - strand, within Psest_1314at 1415.624 kb on - strand, within Psest_1314at 1415.658 kb on - strand, within Psest_1314at 1415.658 kb on - strand, within Psest_1314at 1415.658 kb on - strand, within Psest_1314at 1415.658 kb on - strand, within Psest_1314at 1415.896 kb on + strand, within Psest_1314at 1415.896 kb on + strand, within Psest_1314at 1415.925 kb on - strand, within Psest_1314at 1415.937 kb on - strand, within Psest_1314at 1415.963 kb on + strand, within Psest_1314at 1416.044 kb on + strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.061 kb on + strand, within Psest_1314at 1416.062 kb on - strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.161 kb on + strand, within Psest_1314at 1416.162 kb on - strand, within Psest_1314at 1416.162 kb on - strand, within Psest_1314at 1416.189 kb on - strandat 1416.189 kb on - strandat 1416.189 kb on - strandat 1416.289 kb on + strandat 1416.322 kb on + strandat 1416.322 kb on + strandat 1416.322 kb on + strandat 1416.323 kb on - strandat 1416.323 kb on - strandat 1416.323 kb on - strandat 1416.379 kb on + strand, within Psest_1315at 1416.612 kb on + strandat 1416.613 kb on - strandat 1416.613 kb on - strandat 1416.620 kb on + strandat 1416.639 kb on + strandat 1416.646 kb on + strandat 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1417.002 kb on - strand, within Psest_1316at 1417.037 kb on + strand, within Psest_1316at 1417.038 kb on - strand, within Psest_1316at 1417.038 kb on - strand, within Psest_1316at 1417.138 kb on + strand, within Psest_1316at 1417.219 kb on - strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.425 kb on - strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.436 kb on - strand, within Psest_1316at 1417.436 kb on - strand, within Psest_1316at 1417.466 kb on + strand, within Psest_1316at 1417.466 kb on + strand, within Psest_1316at 1417.589 kb on + strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
1,415,466 + Psest_1314 0.45 -1.9
1,415,563 + Psest_1314 0.51 -2.2
1,415,563 + Psest_1314 0.51 +0.3
1,415,564 - Psest_1314 0.51 -0.2
1,415,564 - Psest_1314 0.51 -0.9
1,415,623 + Psest_1314 0.55 -1.1
1,415,623 + Psest_1314 0.55 +0.1
1,415,623 + Psest_1314 0.55 +0.2
1,415,623 + Psest_1314 0.55 +0.5
1,415,623 + Psest_1314 0.55 +0.4
1,415,623 + Psest_1314 0.55 +0.5
1,415,624 - Psest_1314 0.55 +0.7
1,415,624 - Psest_1314 0.55 -0.5
1,415,624 - Psest_1314 0.55 -2.4
1,415,658 - Psest_1314 0.57 +1.7
1,415,658 - Psest_1314 0.57 -1.0
1,415,658 - Psest_1314 0.57 -0.3
1,415,658 - Psest_1314 0.57 +0.1
1,415,896 + Psest_1314 0.72 +0.1
1,415,896 + Psest_1314 0.72 +0.4
1,415,925 - Psest_1314 0.74 +0.1
1,415,937 - Psest_1314 0.75 -0.5
1,415,963 + Psest_1314 0.76 +0.1
1,416,044 + Psest_1314 0.81 -2.2
1,416,045 - Psest_1314 0.81 -2.0
1,416,045 - Psest_1314 0.81 -1.1
1,416,045 - Psest_1314 0.81 -0.9
1,416,045 - Psest_1314 0.81 +0.5
1,416,045 - Psest_1314 0.81 -0.4
1,416,045 - Psest_1314 0.81 +1.1
1,416,045 - Psest_1314 0.81 -0.3
1,416,061 + Psest_1314 0.82 +1.1
1,416,062 - Psest_1314 0.82 -1.7
1,416,116 + Psest_1314 0.86 -2.4
1,416,116 + Psest_1314 0.86 +0.6
1,416,116 + Psest_1314 0.86 +1.7
1,416,116 + Psest_1314 0.86 -2.9
1,416,161 + Psest_1314 0.89 -1.2
1,416,162 - Psest_1314 0.89 -0.4
1,416,162 - Psest_1314 0.89 +0.5
1,416,189 - +0.5
1,416,189 - +1.4
1,416,189 - -1.3
1,416,289 + -1.7
1,416,322 + +0.6
1,416,322 + +0.1
1,416,322 + +1.0
1,416,323 - -1.4
1,416,323 - +1.0
1,416,323 - +1.6
1,416,379 + Psest_1315 0.17 +0.8
1,416,612 + +0.1
1,416,613 - -0.9
1,416,613 - -0.1
1,416,620 + +2.1
1,416,639 + -1.8
1,416,646 + +0.1
1,416,989 + Psest_1316 0.27 +0.1
1,416,989 + Psest_1316 0.27 +0.5
1,416,989 + Psest_1316 0.27 -0.2
1,416,989 + Psest_1316 0.27 +0.9
1,416,989 + Psest_1316 0.27 +0.1
1,416,990 - Psest_1316 0.27 -2.6
1,416,990 - Psest_1316 0.27 -2.8
1,416,990 - Psest_1316 0.27 -0.2
1,416,990 - Psest_1316 0.27 -0.1
1,416,990 - Psest_1316 0.27 +1.0
1,417,002 - Psest_1316 0.28 +0.5
1,417,037 + Psest_1316 0.30 -1.1
1,417,038 - Psest_1316 0.30 +1.7
1,417,038 - Psest_1316 0.30 +0.7
1,417,138 + Psest_1316 0.38 +1.2
1,417,219 - Psest_1316 0.44 -1.8
1,417,424 + Psest_1316 0.59 +2.9
1,417,424 + Psest_1316 0.59 -0.9
1,417,424 + Psest_1316 0.59 +1.1
1,417,425 - Psest_1316 0.59 -1.1
1,417,433 + Psest_1316 0.59 -1.4
1,417,433 + Psest_1316 0.59 +1.4
1,417,433 + Psest_1316 0.59 -0.3
1,417,433 + Psest_1316 0.59 +0.4
1,417,434 - Psest_1316 0.60 -1.9
1,417,434 - Psest_1316 0.60 -2.4
1,417,434 - Psest_1316 0.60 +0.7
1,417,434 - Psest_1316 0.60 +1.6
1,417,434 - Psest_1316 0.60 +2.1
1,417,434 - Psest_1316 0.60 -0.9
1,417,436 - Psest_1316 0.60 +0.1
1,417,436 - Psest_1316 0.60 +0.7
1,417,466 + Psest_1316 0.62 +0.7
1,417,466 + Psest_1316 0.62 +1.0
1,417,589 + Psest_1316 0.71 -0.2
1,417,590 - Psest_1316 0.71 +2.0
1,417,590 - Psest_1316 0.71 -1.3
1,417,590 - Psest_1316 0.71 -0.2

Or see this region's nucleotide sequence