Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1230

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1229 and Psest_1230 are separated by 6 nucleotidesPsest_1230 and Psest_1231 are separated by 64 nucleotides Psest_1229: Psest_1229 - Di- and tricarboxylate transporters, at 1,335,686 to 1,337,512 _1229 Psest_1230: Psest_1230 - Uncharacterized protein conserved in bacteria, at 1,337,519 to 1,337,815 _1230 Psest_1231: Psest_1231 - Na+/H+ antiporter NhaD and related arsenite permeases, at 1,337,880 to 1,339,262 _1231 Position (kb) 1337 1338Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1336.570 kb on - strand, within Psest_1229at 1336.573 kb on - strand, within Psest_1229at 1336.756 kb on - strand, within Psest_1229at 1336.767 kb on - strand, within Psest_1229at 1336.873 kb on + strand, within Psest_1229at 1336.938 kb on + strand, within Psest_1229at 1336.938 kb on + strand, within Psest_1229at 1336.938 kb on + strand, within Psest_1229at 1336.939 kb on - strand, within Psest_1229at 1336.939 kb on - strand, within Psest_1229at 1337.120 kb on + strand, within Psest_1229at 1337.151 kb on - strand, within Psest_1229at 1337.151 kb on - strand, within Psest_1229at 1337.604 kb on + strand, within Psest_1230at 1337.772 kb on + strand, within Psest_1230at 1337.772 kb on + strand, within Psest_1230at 1337.772 kb on + strand, within Psest_1230at 1337.785 kb on - strand, within Psest_1230at 1337.905 kb on + strandat 1337.905 kb on + strandat 1337.905 kb on + strandat 1337.905 kb on + strandat 1337.906 kb on - strandat 1337.906 kb on - strandat 1337.906 kb on - strandat 1337.906 kb on - strandat 1337.926 kb on + strandat 1337.962 kb on + strandat 1337.963 kb on - strandat 1338.052 kb on - strand, within Psest_1231at 1338.154 kb on + strand, within Psest_1231at 1338.154 kb on + strand, within Psest_1231at 1338.155 kb on - strand, within Psest_1231at 1338.221 kb on - strand, within Psest_1231at 1338.221 kb on - strand, within Psest_1231at 1338.221 kb on - strand, within Psest_1231at 1338.221 kb on - strand, within Psest_1231at 1338.233 kb on - strand, within Psest_1231at 1338.366 kb on + strand, within Psest_1231at 1338.463 kb on + strand, within Psest_1231at 1338.463 kb on + strand, within Psest_1231at 1338.464 kb on - strand, within Psest_1231at 1338.464 kb on - strand, within Psest_1231at 1338.464 kb on - strand, within Psest_1231at 1338.649 kb on - strand, within Psest_1231at 1338.649 kb on - strand, within Psest_1231

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,336,570 - Psest_1229 0.48 -2.0
1,336,573 - Psest_1229 0.49 -1.3
1,336,756 - Psest_1229 0.59 +1.1
1,336,767 - Psest_1229 0.59 +0.0
1,336,873 + Psest_1229 0.65 -1.6
1,336,938 + Psest_1229 0.69 -0.0
1,336,938 + Psest_1229 0.69 +1.0
1,336,938 + Psest_1229 0.69 -0.1
1,336,939 - Psest_1229 0.69 -2.0
1,336,939 - Psest_1229 0.69 +0.2
1,337,120 + Psest_1229 0.78 +0.6
1,337,151 - Psest_1229 0.80 +0.6
1,337,151 - Psest_1229 0.80 -1.3
1,337,604 + Psest_1230 0.29 -0.7
1,337,772 + Psest_1230 0.85 +1.2
1,337,772 + Psest_1230 0.85 -0.8
1,337,772 + Psest_1230 0.85 +2.8
1,337,785 - Psest_1230 0.90 +1.1
1,337,905 + -0.2
1,337,905 + +0.0
1,337,905 + +0.4
1,337,905 + +1.3
1,337,906 - +0.0
1,337,906 - -1.2
1,337,906 - +0.2
1,337,906 - -1.2
1,337,926 + +0.5
1,337,962 + -1.1
1,337,963 - +0.6
1,338,052 - Psest_1231 0.12 -0.1
1,338,154 + Psest_1231 0.20 -1.0
1,338,154 + Psest_1231 0.20 -1.8
1,338,155 - Psest_1231 0.20 +0.3
1,338,221 - Psest_1231 0.25 -0.9
1,338,221 - Psest_1231 0.25 -0.5
1,338,221 - Psest_1231 0.25 -1.0
1,338,221 - Psest_1231 0.25 +2.2
1,338,233 - Psest_1231 0.26 -0.5
1,338,366 + Psest_1231 0.35 +0.4
1,338,463 + Psest_1231 0.42 +0.9
1,338,463 + Psest_1231 0.42 -1.3
1,338,464 - Psest_1231 0.42 -0.6
1,338,464 - Psest_1231 0.42 +0.1
1,338,464 - Psest_1231 0.42 +0.1
1,338,649 - Psest_1231 0.56 +0.4
1,338,649 - Psest_1231 0.56 +0.1

Or see this region's nucleotide sequence