Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1753 and Psest_1754 are separated by 135 nucleotides Psest_1754 and Psest_1755 overlap by 4 nucleotides Psest_1755 and Psest_1756 are separated by 92 nucleotides Psest_1756 and Psest_1757 overlap by 4 nucleotides
Psest_1753: Psest_1753 - Flagellar hook-length control protein FliK., at 1,855,889 to 1,857,418
_1753
Psest_1754: Psest_1754 - heme ABC exporter, ATP-binding protein CcmA, at 1,857,554 to 1,858,189
_1754
Psest_1755: Psest_1755 - heme exporter protein CcmB, at 1,858,186 to 1,858,857
_1755
Psest_1756: Psest_1756 - heme exporter protein CcmC, at 1,858,950 to 1,859,705
_1756
Psest_1757: Psest_1757 - heme exporter protein CcmD, at 1,859,702 to 1,859,878
_1757
Position (kb)
1858
1859 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1857.436 kb on + strand at 1857.437 kb on - strand at 1857.437 kb on - strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.481 kb on + strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.482 kb on - strand at 1857.483 kb on + strand at 1857.514 kb on + strand at 1858.896 kb on + strand at 1858.896 kb on + strand at 1858.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 1,857,436 + -0.2 1,857,437 - +1.0 1,857,437 - +1.0 1,857,481 + +0.4 1,857,481 + +2.1 1,857,481 + +1.2 1,857,481 + +0.4 1,857,481 + +0.2 1,857,482 - -0.3 1,857,482 - -0.6 1,857,482 - -0.1 1,857,482 - +0.1 1,857,482 - -2.1 1,857,483 + +1.2 1,857,514 + +1.6 1,858,896 + -1.7 1,858,896 + -0.8 1,858,896 + -0.3
Or see this region's nucleotide sequence