Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1627

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1625 and Psest_1626 are separated by 45 nucleotidesPsest_1626 and Psest_1627 are separated by 150 nucleotidesPsest_1627 and Psest_1628 are separated by 16 nucleotidesPsest_1628 and Psest_1629 are separated by 141 nucleotidesPsest_1629 and Psest_1630 are separated by 6 nucleotides Psest_1625: Psest_1625 - hypothetical protein, at 1,728,290 to 1,728,610 _1625 Psest_1626: Psest_1626 - Predicted integral membrane protein, at 1,728,656 to 1,729,093 _1626 Psest_1627: Psest_1627 - Superfamily II DNA and RNA helicases, at 1,729,244 to 1,730,575 _1627 Psest_1628: Psest_1628 - hypothetical protein, at 1,730,592 to 1,730,888 _1628 Psest_1629: Psest_1629 - hypothetical protein, at 1,731,030 to 1,731,410 _1629 Psest_1630: Psest_1630 - Transcriptional regulator, at 1,731,417 to 1,732,271 _1630 Position (kb) 1729 1730 1731Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1728.246 kb on - strandat 1728.248 kb on - strandat 1728.272 kb on - strandat 1728.351 kb on - strand, within Psest_1625at 1728.357 kb on + strand, within Psest_1625at 1728.358 kb on - strand, within Psest_1625at 1728.447 kb on - strand, within Psest_1625at 1728.608 kb on + strandat 1728.609 kb on - strandat 1728.665 kb on + strandat 1728.666 kb on - strandat 1728.666 kb on - strandat 1728.744 kb on + strand, within Psest_1626at 1728.754 kb on - strand, within Psest_1626at 1728.933 kb on + strand, within Psest_1626at 1729.038 kb on + strand, within Psest_1626at 1729.039 kb on - strand, within Psest_1626at 1729.039 kb on - strand, within Psest_1626at 1729.055 kb on + strandat 1729.206 kb on + strandat 1729.206 kb on + strandat 1729.206 kb on + strandat 1729.206 kb on + strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.207 kb on - strandat 1729.216 kb on + strandat 1729.217 kb on - strandat 1729.236 kb on + strandat 1729.237 kb on - strandat 1729.362 kb on + strandat 1729.362 kb on + strandat 1729.362 kb on + strandat 1729.363 kb on - strandat 1729.970 kb on + strand, within Psest_1627at 1729.970 kb on + strand, within Psest_1627at 1729.970 kb on + strand, within Psest_1627at 1729.971 kb on - strand, within Psest_1627at 1729.971 kb on - strand, within Psest_1627at 1729.971 kb on - strand, within Psest_1627at 1729.971 kb on - strand, within Psest_1627at 1730.222 kb on + strand, within Psest_1627at 1730.222 kb on + strand, within Psest_1627at 1730.222 kb on + strand, within Psest_1627at 1730.222 kb on + strand, within Psest_1627at 1730.223 kb on - strand, within Psest_1627at 1730.223 kb on - strand, within Psest_1627at 1730.223 kb on - strand, within Psest_1627at 1730.223 kb on - strand, within Psest_1627at 1730.223 kb on - strand, within Psest_1627at 1730.223 kb on - strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.375 kb on + strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.376 kb on - strand, within Psest_1627at 1730.643 kb on + strand, within Psest_1628at 1730.644 kb on - strand, within Psest_1628at 1730.644 kb on - strand, within Psest_1628at 1730.644 kb on - strand, within Psest_1628at 1730.665 kb on + strand, within Psest_1628at 1730.665 kb on + strand, within Psest_1628at 1730.666 kb on - strand, within Psest_1628at 1730.733 kb on + strand, within Psest_1628at 1730.942 kb on - strandat 1730.942 kb on - strandat 1730.942 kb on - strandat 1730.980 kb on + strandat 1730.980 kb on + strandat 1730.980 kb on + strandat 1730.980 kb on + strandat 1730.981 kb on - strandat 1730.982 kb on + strandat 1730.982 kb on + strandat 1730.982 kb on + strandat 1730.982 kb on + strandat 1730.982 kb on + strandat 1730.982 kb on + strandat 1730.982 kb on + strandat 1730.982 kb on + strandat 1730.983 kb on - strandat 1730.984 kb on + strandat 1730.984 kb on + strandat 1730.984 kb on + strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1730.985 kb on - strandat 1731.036 kb on + strandat 1731.036 kb on + strandat 1731.037 kb on - strandat 1731.037 kb on - strandat 1731.419 kb on - strandat 1731.440 kb on + strandat 1731.442 kb on + strandat 1731.443 kb on - strandat 1731.443 kb on - strandat 1731.443 kb on - strandat 1731.543 kb on + strand, within Psest_1630at 1731.543 kb on + strand, within Psest_1630at 1731.543 kb on + strand, within Psest_1630at 1731.543 kb on + strand, within Psest_1630at 1731.544 kb on - strand, within Psest_1630

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,728,246 - +0.7
1,728,248 - -0.3
1,728,272 - -0.6
1,728,351 - Psest_1625 0.19 +1.7
1,728,357 + Psest_1625 0.21 -1.5
1,728,358 - Psest_1625 0.21 +0.8
1,728,447 - Psest_1625 0.49 +0.5
1,728,608 + -1.7
1,728,609 - -0.5
1,728,665 + -0.8
1,728,666 - +0.7
1,728,666 - -1.0
1,728,744 + Psest_1626 0.20 -1.4
1,728,754 - Psest_1626 0.22 +1.2
1,728,933 + Psest_1626 0.63 +1.2
1,729,038 + Psest_1626 0.87 +0.4
1,729,039 - Psest_1626 0.87 -0.4
1,729,039 - Psest_1626 0.87 +1.9
1,729,055 + +1.0
1,729,206 + +0.2
1,729,206 + -0.5
1,729,206 + +3.4
1,729,206 + +2.7
1,729,207 - +2.8
1,729,207 - -3.1
1,729,207 - +0.4
1,729,207 - +0.8
1,729,207 - +1.8
1,729,216 + -0.7
1,729,217 - +1.7
1,729,236 + +1.2
1,729,237 - +0.5
1,729,362 + -0.5
1,729,362 + -0.9
1,729,362 + -1.8
1,729,363 - -0.7
1,729,970 + Psest_1627 0.55 -1.3
1,729,970 + Psest_1627 0.55 -2.3
1,729,970 + Psest_1627 0.55 -0.1
1,729,971 - Psest_1627 0.55 +1.7
1,729,971 - Psest_1627 0.55 -0.7
1,729,971 - Psest_1627 0.55 -1.9
1,729,971 - Psest_1627 0.55 -0.9
1,730,222 + Psest_1627 0.73 -1.1
1,730,222 + Psest_1627 0.73 +0.3
1,730,222 + Psest_1627 0.73 -2.1
1,730,222 + Psest_1627 0.73 -3.3
1,730,223 - Psest_1627 0.73 -2.1
1,730,223 - Psest_1627 0.73 -3.3
1,730,223 - Psest_1627 0.73 +0.2
1,730,223 - Psest_1627 0.73 -0.9
1,730,223 - Psest_1627 0.73 -1.6
1,730,223 - Psest_1627 0.73 -1.3
1,730,375 + Psest_1627 0.85 -1.3
1,730,375 + Psest_1627 0.85 -1.5
1,730,375 + Psest_1627 0.85 -0.8
1,730,375 + Psest_1627 0.85 +0.8
1,730,375 + Psest_1627 0.85 -1.3
1,730,375 + Psest_1627 0.85 +0.8
1,730,375 + Psest_1627 0.85 -1.6
1,730,375 + Psest_1627 0.85 -1.1
1,730,375 + Psest_1627 0.85 +1.0
1,730,375 + Psest_1627 0.85 -0.9
1,730,375 + Psest_1627 0.85 +0.2
1,730,375 + Psest_1627 0.85 -1.5
1,730,375 + Psest_1627 0.85 -0.4
1,730,375 + Psest_1627 0.85 -0.1
1,730,376 - Psest_1627 0.85 -0.2
1,730,376 - Psest_1627 0.85 +0.9
1,730,376 - Psest_1627 0.85 +0.3
1,730,376 - Psest_1627 0.85 -2.1
1,730,376 - Psest_1627 0.85 -0.2
1,730,376 - Psest_1627 0.85 -1.8
1,730,376 - Psest_1627 0.85 -2.1
1,730,376 - Psest_1627 0.85 +0.1
1,730,376 - Psest_1627 0.85 -0.2
1,730,376 - Psest_1627 0.85 -0.2
1,730,376 - Psest_1627 0.85 +0.4
1,730,376 - Psest_1627 0.85 +1.4
1,730,376 - Psest_1627 0.85 +1.5
1,730,643 + Psest_1628 0.17 -1.7
1,730,644 - Psest_1628 0.18 +0.6
1,730,644 - Psest_1628 0.18 -1.0
1,730,644 - Psest_1628 0.18 -1.1
1,730,665 + Psest_1628 0.25 +0.1
1,730,665 + Psest_1628 0.25 +0.1
1,730,666 - Psest_1628 0.25 -1.5
1,730,733 + Psest_1628 0.47 -1.1
1,730,942 - -2.9
1,730,942 - -2.1
1,730,942 - -0.5
1,730,980 + +1.5
1,730,980 + -2.7
1,730,980 + -0.9
1,730,980 + -1.7
1,730,981 - +0.8
1,730,982 + +0.4
1,730,982 + -2.1
1,730,982 + +1.5
1,730,982 + +1.7
1,730,982 + +0.3
1,730,982 + -1.9
1,730,982 + -0.4
1,730,982 + +1.0
1,730,983 - -1.2
1,730,984 + -2.5
1,730,984 + +2.0
1,730,984 + +0.1
1,730,985 - +0.7
1,730,985 - +0.7
1,730,985 - +0.4
1,730,985 - +0.4
1,730,985 - -1.9
1,730,985 - -2.4
1,730,985 - -0.2
1,730,985 - +4.0
1,730,985 - -1.8
1,730,985 - -0.5
1,730,985 - +0.5
1,730,985 - +0.5
1,730,985 - -0.6
1,730,985 - +0.8
1,730,985 - +2.0
1,731,036 + +1.1
1,731,036 + -0.8
1,731,037 - -0.2
1,731,037 - -3.1
1,731,419 - +0.3
1,731,440 + -1.0
1,731,442 + -1.4
1,731,443 - +1.0
1,731,443 - -1.5
1,731,443 - -1.0
1,731,543 + Psest_1630 0.15 -2.8
1,731,543 + Psest_1630 0.15 +1.3
1,731,543 + Psest_1630 0.15 +0.9
1,731,543 + Psest_1630 0.15 +0.1
1,731,544 - Psest_1630 0.15 +1.1

Or see this region's nucleotide sequence