Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_899 and Pf1N1B4_900 are separated by 8 nucleotides Pf1N1B4_900 and Pf1N1B4_901 are separated by 129 nucleotides Pf1N1B4_901 and Pf1N1B4_902 overlap by 24 nucleotides
Pf1N1B4_899 - DNA polymerase III chi subunit (EC 2.7.7.7), at 1,026,586 to 1,027,014
_899
Pf1N1B4_900 - FIG00957284: hypothetical protein, at 1,027,023 to 1,027,412
_900
Pf1N1B4_901 - hypothetical protein, at 1,027,542 to 1,027,658
_901
Pf1N1B4_902 - Valyl-tRNA synthetase (EC 6.1.1.9), at 1,027,635 to 1,030,481
_902
Position (kb)
1027
1028 Strain fitness (log2 ratio)
-2
-1
0
1 at 1026.604 kb on + strand at 1026.604 kb on + strand at 1026.604 kb on + strand at 1026.604 kb on + strand at 1026.604 kb on + strand at 1026.604 kb on + strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.605 kb on - strand at 1026.607 kb on - strand at 1026.691 kb on + strand, within Pf1N1B4_899 at 1026.691 kb on + strand, within Pf1N1B4_899 at 1026.702 kb on + strand at 1026.879 kb on - strand, within Pf1N1B4_899 at 1027.001 kb on + strand at 1027.405 kb on - strand at 1027.410 kb on + strand at 1027.410 kb on + strand at 1027.411 kb on - strand at 1027.411 kb on - strand at 1027.425 kb on + strand at 1027.425 kb on + strand at 1027.425 kb on + strand at 1027.425 kb on + strand at 1027.425 kb on + strand at 1027.425 kb on + strand at 1027.425 kb on + strand at 1027.425 kb on + strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.426 kb on - strand at 1027.459 kb on + strand at 1027.459 kb on + strand at 1027.472 kb on + strand at 1027.586 kb on + strand, within Pf1N1B4_901 at 1027.588 kb on + strand, within Pf1N1B4_901 at 1027.588 kb on + strand, within Pf1N1B4_901 at 1027.588 kb on + strand, within Pf1N1B4_901
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 1,026,604 + -0.3 1,026,604 + -0.5 1,026,604 + -0.3 1,026,604 + -0.1 1,026,604 + +0.9 1,026,604 + +1.0 1,026,605 - -0.2 1,026,605 - +0.1 1,026,605 - -0.2 1,026,605 - +0.2 1,026,605 - -0.5 1,026,605 - -0.0 1,026,605 - +1.1 1,026,605 - +0.1 1,026,605 - -0.1 1,026,605 - +0.0 1,026,605 - -0.9 1,026,605 - -0.1 1,026,607 - -0.1 1,026,691 + Pf1N1B4_899 0.24 +0.1 1,026,691 + Pf1N1B4_899 0.24 -0.4 1,026,702 + +0.1 1,026,879 - Pf1N1B4_899 0.68 +0.5 1,027,001 + +0.1 1,027,405 - +0.2 1,027,410 + -0.2 1,027,410 + -1.2 1,027,411 - -1.3 1,027,411 - +1.3 1,027,425 + +1.5 1,027,425 + +1.6 1,027,425 + -0.4 1,027,425 + -0.4 1,027,425 + -0.2 1,027,425 + +0.3 1,027,425 + +0.5 1,027,425 + +0.1 1,027,426 - +1.3 1,027,426 - +0.9 1,027,426 - +1.4 1,027,426 - -0.7 1,027,426 - -0.4 1,027,426 - -0.9 1,027,426 - -2.5 1,027,426 - +0.3 1,027,426 - +1.4 1,027,426 - +0.1 1,027,459 + -0.0 1,027,459 + +1.0 1,027,472 + -0.7 1,027,586 + Pf1N1B4_901 0.38 -0.6 1,027,588 + Pf1N1B4_901 0.39 -1.1 1,027,588 + Pf1N1B4_901 0.39 -0.8 1,027,588 + Pf1N1B4_901 0.39 -1.0
Or see this region's nucleotide sequence