Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_901

Experiment: TIme6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_899 and Pf1N1B4_900 are separated by 8 nucleotidesPf1N1B4_900 and Pf1N1B4_901 are separated by 129 nucleotidesPf1N1B4_901 and Pf1N1B4_902 overlap by 24 nucleotides Pf1N1B4_899 - DNA polymerase III chi subunit (EC 2.7.7.7), at 1,026,586 to 1,027,014 _899 Pf1N1B4_900 - FIG00957284: hypothetical protein, at 1,027,023 to 1,027,412 _900 Pf1N1B4_901 - hypothetical protein, at 1,027,542 to 1,027,658 _901 Pf1N1B4_902 - Valyl-tRNA synthetase (EC 6.1.1.9), at 1,027,635 to 1,030,481 _902 Position (kb) 1027 1028Strain fitness (log2 ratio) -2 -1 0 1at 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.604 kb on + strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.605 kb on - strandat 1026.607 kb on - strandat 1026.691 kb on + strand, within Pf1N1B4_899at 1026.691 kb on + strand, within Pf1N1B4_899at 1026.702 kb on + strandat 1026.879 kb on - strand, within Pf1N1B4_899at 1027.001 kb on + strandat 1027.405 kb on - strandat 1027.410 kb on + strandat 1027.410 kb on + strandat 1027.411 kb on - strandat 1027.411 kb on - strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.425 kb on + strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.426 kb on - strandat 1027.459 kb on + strandat 1027.459 kb on + strandat 1027.472 kb on + strandat 1027.586 kb on + strand, within Pf1N1B4_901at 1027.588 kb on + strand, within Pf1N1B4_901at 1027.588 kb on + strand, within Pf1N1B4_901at 1027.588 kb on + strand, within Pf1N1B4_901

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Per-strain Table

Position Strand Gene LocusTag Fraction TIme6-nophage
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1,026,604 + -0.3
1,026,604 + -0.5
1,026,604 + -0.3
1,026,604 + -0.1
1,026,604 + +0.9
1,026,604 + +1.0
1,026,605 - -0.2
1,026,605 - +0.1
1,026,605 - -0.2
1,026,605 - +0.2
1,026,605 - -0.5
1,026,605 - -0.0
1,026,605 - +1.1
1,026,605 - +0.1
1,026,605 - -0.1
1,026,605 - +0.0
1,026,605 - -0.9
1,026,605 - -0.1
1,026,607 - -0.1
1,026,691 + Pf1N1B4_899 0.24 +0.1
1,026,691 + Pf1N1B4_899 0.24 -0.4
1,026,702 + +0.1
1,026,879 - Pf1N1B4_899 0.68 +0.5
1,027,001 + +0.1
1,027,405 - +0.2
1,027,410 + -0.2
1,027,410 + -1.2
1,027,411 - -1.3
1,027,411 - +1.3
1,027,425 + +1.5
1,027,425 + +1.6
1,027,425 + -0.4
1,027,425 + -0.4
1,027,425 + -0.2
1,027,425 + +0.3
1,027,425 + +0.5
1,027,425 + +0.1
1,027,426 - +1.3
1,027,426 - +0.9
1,027,426 - +1.4
1,027,426 - -0.7
1,027,426 - -0.4
1,027,426 - -0.9
1,027,426 - -2.5
1,027,426 - +0.3
1,027,426 - +1.4
1,027,426 - +0.1
1,027,459 + -0.0
1,027,459 + +1.0
1,027,472 + -0.7
1,027,586 + Pf1N1B4_901 0.38 -0.6
1,027,588 + Pf1N1B4_901 0.39 -1.1
1,027,588 + Pf1N1B4_901 0.39 -0.8
1,027,588 + Pf1N1B4_901 0.39 -1.0

Or see this region's nucleotide sequence