Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_730 and Pf1N1B4_731 are separated by 130 nucleotides Pf1N1B4_731 and Pf1N1B4_732 are separated by 55 nucleotides Pf1N1B4_732 and Pf1N1B4_733 are separated by 108 nucleotides
Pf1N1B4_730 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 833,064 to 833,822
_730
Pf1N1B4_731 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 833,953 to 835,047
_731
Pf1N1B4_732 - hypothetical protein, at 835,103 to 835,306
_732
Pf1N1B4_733 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 835,415 to 837,466
_733
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.993 kb on + strand at 833.019 kb on + strand at 833.020 kb on - strand at 833.020 kb on - strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.049 kb on + strand at 833.083 kb on + strand at 833.084 kb on - strand at 833.113 kb on + strand at 833.113 kb on + strand at 833.133 kb on + strand at 833.133 kb on + strand at 833.238 kb on + strand, within Pf1N1B4_730 at 833.239 kb on - strand at 833.276 kb on + strand, within Pf1N1B4_730 at 833.276 kb on + strand at 833.276 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.505 kb on - strand at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.757 kb on + strand at 833.758 kb on - strand at 833.758 kb on - strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.779 kb on - strand at 833.779 kb on - strand at 833.820 kb on + strand at 833.820 kb on + strand at 833.821 kb on - strand at 833.883 kb on + strand at 833.883 kb on + strand at 833.883 kb on + strand at 833.884 kb on - strand at 833.884 kb on - strand at 833.897 kb on + strand at 833.898 kb on - strand at 833.898 kb on - strand at 833.899 kb on + strand at 833.899 kb on + strand at 833.899 kb on + strand at 833.900 kb on - strand at 833.954 kb on + strand at 833.955 kb on - strand at 834.903 kb on - strand, within Pf1N1B4_731 at 834.903 kb on - strand, within Pf1N1B4_731 at 834.903 kb on - strand, within Pf1N1B4_731 at 835.090 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.189 kb on + strand, within Pf1N1B4_732
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 832,993 + -0.2 833,019 + -0.3 833,020 - +0.7 833,020 - -0.4 833,024 + +0.3 833,024 + -0.3 833,024 + +0.5 833,024 + -0.3 833,025 - -0.3 833,025 - +0.2 833,025 - -1.8 833,025 - -1.3 833,025 - +0.7 833,025 - -1.0 833,049 + +0.4 833,083 + +0.1 833,084 - +1.6 833,113 + +0.9 833,113 + +2.0 833,133 + -1.0 833,133 + -2.0 833,238 + Pf1N1B4_730 0.23 -0.5 833,239 - +0.3 833,276 + Pf1N1B4_730 0.28 +0.6 833,276 + -1.0 833,276 + Pf1N1B4_730 0.28 -1.3 833,504 + Pf1N1B4_730 0.58 +1.5 833,504 + Pf1N1B4_730 0.58 +1.3 833,504 + Pf1N1B4_730 0.58 -0.2 833,504 + Pf1N1B4_730 0.58 -0.3 833,504 + Pf1N1B4_730 0.58 -1.7 833,504 + Pf1N1B4_730 0.58 -2.7 833,505 - +0.7 833,547 + Pf1N1B4_730 0.64 -0.1 833,547 + Pf1N1B4_730 0.64 +0.5 833,547 + Pf1N1B4_730 0.64 +1.0 833,547 + Pf1N1B4_730 0.64 +0.5 833,548 - Pf1N1B4_730 0.64 -0.1 833,548 - Pf1N1B4_730 0.64 +0.1 833,548 - Pf1N1B4_730 0.64 -0.8 833,757 + -1.5 833,758 - +0.4 833,758 - +0.9 833,775 + +0.4 833,775 + -0.9 833,775 + -0.1 833,775 + +0.6 833,775 + +0.3 833,776 - -0.4 833,776 - -2.0 833,776 - +0.3 833,776 - +0.0 833,778 + -1.0 833,778 + -1.8 833,778 + +0.6 833,778 + -0.5 833,778 + +0.0 833,778 + +1.0 833,778 + +0.0 833,779 - +1.9 833,779 - -0.1 833,820 + -0.1 833,820 + -0.3 833,821 - -0.2 833,883 + +1.7 833,883 + +0.1 833,883 + -0.1 833,884 - -1.8 833,884 - +0.7 833,897 + -0.7 833,898 - +0.1 833,898 - -0.4 833,899 + -1.3 833,899 + -0.1 833,899 + -2.3 833,900 - +0.3 833,954 + -1.7 833,955 - -0.9 834,903 - Pf1N1B4_731 0.87 -1.0 834,903 - Pf1N1B4_731 0.87 -2.5 834,903 - Pf1N1B4_731 0.87 -0.5 835,090 + -0.4 835,099 + +0.2 835,099 + -0.9 835,099 + -0.3 835,099 + -0.1 835,099 + +0.8 835,099 + +0.6 835,099 + +0.6 835,099 + +0.6 835,099 + -0.3 835,100 - -0.3 835,100 - +0.2 835,100 - -1.0 835,100 - -0.1 835,100 - +1.3 835,100 - -0.6 835,100 - +0.6 835,100 - +1.3 835,106 + -0.3 835,106 + -2.6 835,106 + -0.3 835,106 + +0.4 835,106 + -0.2 835,107 - -0.5 835,107 - +1.0 835,107 - -0.7 835,107 - +0.0 835,107 - +0.1 835,107 - -1.1 835,107 - -0.7 835,189 + Pf1N1B4_732 0.42 +0.1
Or see this region's nucleotide sequence