Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_642 and Pf1N1B4_643 are separated by 100 nucleotides Pf1N1B4_643 and Pf1N1B4_644 are separated by 464 nucleotides Pf1N1B4_644 and Pf1N1B4_645 are separated by 76 nucleotides Pf1N1B4_645 and Pf1N1B4_646 are separated by 3 nucleotides
Pf1N1B4_642 - Glycerate kinase (EC 2.7.1.31), at 738,163 to 738,420
_642
Pf1N1B4_643 - FIG00955846: hypothetical protein, at 738,521 to 738,859
_643
Pf1N1B4_644 - Cold shock protein CspC, at 739,324 to 739,926
_644
Pf1N1B4_645 - Protein SlyX, at 740,003 to 740,209
_645
Pf1N1B4_646 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 740,213 to 740,638
_646
Position (kb) 739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.375 kb on - strand, within Pf1N1B4_642 at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.449 kb on - strand at 738.451 kb on - strand at 738.458 kb on - strand at 738.458 kb on - strand at 738.458 kb on - strand at 738.458 kb on - strand at 738.479 kb on - strand at 738.485 kb on - strand at 738.485 kb on - strand at 738.485 kb on - strand at 738.679 kb on + strand, within Pf1N1B4_643 at 738.680 kb on - strand, within Pf1N1B4_643 at 738.691 kb on + strand, within Pf1N1B4_643 at 738.699 kb on + strand, within Pf1N1B4_643 at 738.699 kb on + strand at 738.700 kb on - strand, within Pf1N1B4_643 at 738.700 kb on - strand, within Pf1N1B4_643 at 738.700 kb on - strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.806 kb on + strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.807 kb on - strand, within Pf1N1B4_643 at 738.853 kb on - strand at 738.853 kb on - strand at 738.853 kb on - strand at 738.859 kb on + strand at 738.860 kb on - strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.892 kb on + strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.893 kb on - strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.894 kb on + strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.895 kb on - strand at 738.897 kb on - strand at 738.897 kb on - strand at 738.941 kb on - strand at 738.941 kb on - strand at 738.954 kb on + strand at 738.954 kb on + strand at 738.954 kb on + strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.968 kb on + strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.969 kb on - strand at 738.974 kb on - strand at 739.011 kb on - strand at 739.033 kb on + strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.181 kb on - strand at 739.223 kb on - strand at 739.347 kb on - strand at 739.409 kb on - strand, within Pf1N1B4_644 at 739.699 kb on + strand, within Pf1N1B4_644 at 739.700 kb on - strand, within Pf1N1B4_644 at 739.764 kb on + strand, within Pf1N1B4_644 at 739.765 kb on - strand, within Pf1N1B4_644 at 739.937 kb on - strand at 739.978 kb on - strand at 740.007 kb on + strand at 740.007 kb on + strand at 740.007 kb on + strand at 740.007 kb on + strand at 740.008 kb on - strand at 740.008 kb on - strand at 740.008 kb on - strand at 740.008 kb on - strand at 740.293 kb on - strand, within Pf1N1B4_646 at 740.293 kb on - strand, within Pf1N1B4_646 at 740.293 kb on - strand, within Pf1N1B4_646 at 740.293 kb on - strand, within Pf1N1B4_646 at 740.293 kb on - strand, within Pf1N1B4_646 at 740.293 kb on - strand, within Pf1N1B4_646 at 740.390 kb on - strand, within Pf1N1B4_646 at 740.484 kb on - strand, within Pf1N1B4_646 at 740.484 kb on - strand, within Pf1N1B4_646 at 740.484 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.493 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.502 kb on - strand, within Pf1N1B4_646 at 740.548 kb on - strand, within Pf1N1B4_646 at 740.548 kb on - strand, within Pf1N1B4_646 at 740.548 kb on - strand, within Pf1N1B4_646 at 740.548 kb on - strand, within Pf1N1B4_646 at 740.628 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.723 kb on - strand at 740.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 738,375 - Pf1N1B4_642 0.82 -1.0 738,375 - Pf1N1B4_642 0.82 -0.5 738,375 - Pf1N1B4_642 0.82 -1.7 738,375 - Pf1N1B4_642 0.82 +0.3 738,375 - Pf1N1B4_642 0.82 +1.1 738,375 - Pf1N1B4_642 0.82 +0.1 738,375 - Pf1N1B4_642 0.82 -0.5 738,375 - Pf1N1B4_642 0.82 -0.0 738,375 - Pf1N1B4_642 0.82 -0.0 738,375 - Pf1N1B4_642 0.82 -0.2 738,375 - +0.6 738,375 - Pf1N1B4_642 0.82 +0.7 738,375 - Pf1N1B4_642 0.82 -0.8 738,375 - Pf1N1B4_642 0.82 +0.3 738,375 - Pf1N1B4_642 0.82 -1.0 738,449 - +1.0 738,449 - +0.3 738,449 - +0.1 738,449 - +0.2 738,449 - +0.2 738,449 - -1.0 738,449 - +0.1 738,449 - -0.9 738,449 - +0.3 738,449 - -0.4 738,449 - +0.2 738,449 - -1.8 738,449 - -1.5 738,451 - -0.1 738,458 - -0.7 738,458 - -0.0 738,458 - +0.8 738,458 - +0.2 738,479 - -0.8 738,485 - +0.7 738,485 - -0.8 738,485 - +0.5 738,679 + Pf1N1B4_643 0.47 -0.0 738,680 - Pf1N1B4_643 0.47 +0.3 738,691 + Pf1N1B4_643 0.50 +0.5 738,699 + Pf1N1B4_643 0.53 +0.2 738,699 + +1.3 738,700 - Pf1N1B4_643 0.53 -0.3 738,700 - Pf1N1B4_643 0.53 -0.8 738,700 - Pf1N1B4_643 0.53 -0.5 738,806 + Pf1N1B4_643 0.84 -0.7 738,806 + Pf1N1B4_643 0.84 +0.8 738,806 + Pf1N1B4_643 0.84 -1.5 738,806 + Pf1N1B4_643 0.84 -1.8 738,806 + Pf1N1B4_643 0.84 -0.3 738,806 + Pf1N1B4_643 0.84 +0.7 738,807 - Pf1N1B4_643 0.84 +2.1 738,807 - Pf1N1B4_643 0.84 -0.4 738,807 - Pf1N1B4_643 0.84 -0.2 738,807 - Pf1N1B4_643 0.84 +0.7 738,807 - Pf1N1B4_643 0.84 +0.0 738,807 - Pf1N1B4_643 0.84 +0.0 738,807 - Pf1N1B4_643 0.84 +0.7 738,807 - Pf1N1B4_643 0.84 +0.0 738,807 - Pf1N1B4_643 0.84 -1.1 738,807 - Pf1N1B4_643 0.84 -0.5 738,807 - Pf1N1B4_643 0.84 -1.7 738,807 - Pf1N1B4_643 0.84 -0.3 738,807 - Pf1N1B4_643 0.84 -0.9 738,807 - Pf1N1B4_643 0.84 -0.1 738,807 - Pf1N1B4_643 0.84 +0.8 738,807 - Pf1N1B4_643 0.84 -0.5 738,853 - -0.8 738,853 - -0.9 738,853 - -0.5 738,859 + +1.1 738,860 - -0.3 738,892 + +0.5 738,892 + -1.4 738,892 + -0.7 738,892 + -0.4 738,892 + -0.8 738,892 + -0.5 738,892 + +0.7 738,892 + -0.3 738,892 + -0.1 738,892 + -0.7 738,892 + +0.9 738,892 + +0.3 738,893 - -0.4 738,893 - +0.0 738,893 - +0.1 738,893 - +0.1 738,893 - +0.0 738,893 - -0.2 738,893 - +0.1 738,893 - +0.3 738,893 - -0.7 738,893 - -0.6 738,893 - -0.9 738,894 + -0.0 738,894 + -0.5 738,894 + +0.5 738,894 + -0.9 738,894 + -0.5 738,894 + -2.0 738,894 + -1.3 738,895 - +1.0 738,895 - +0.6 738,895 - +1.1 738,895 - +0.1 738,895 - -0.5 738,895 - +0.0 738,895 - +0.5 738,895 - -1.4 738,895 - -0.4 738,895 - -0.6 738,895 - +0.7 738,895 - -0.7 738,895 - -0.9 738,895 - +1.1 738,895 - +0.9 738,895 - -1.0 738,895 - -0.7 738,895 - +0.0 738,895 - -1.7 738,895 - +0.1 738,895 - -0.3 738,895 - +0.1 738,895 - +0.1 738,895 - -0.6 738,895 - +0.7 738,895 - -1.5 738,895 - -1.3 738,895 - -1.1 738,895 - -0.8 738,895 - -0.0 738,895 - +0.2 738,895 - -1.5 738,897 - +0.1 738,897 - -0.5 738,941 - +0.2 738,941 - +0.3 738,954 + -0.7 738,954 + -0.5 738,954 + +1.1 738,955 - -1.1 738,955 - +0.1 738,955 - -0.1 738,955 - +1.1 738,955 - +1.3 738,955 - -1.3 738,955 - +0.7 738,955 - +0.7 738,955 - -1.7 738,955 - -0.2 738,955 - +0.3 738,955 - +0.6 738,968 + -0.3 738,968 + -0.9 738,968 + +1.7 738,968 + -0.5 738,968 + -0.7 738,969 - +0.1 738,969 - -0.2 738,969 - +0.3 738,969 - -0.3 738,969 - -0.3 738,969 - +1.3 738,969 - +0.4 738,969 - -0.2 738,969 - -1.1 738,974 - +0.1 739,011 - -0.2 739,033 + +0.6 739,034 - +0.4 739,034 - +0.7 739,034 - +0.8 739,034 - +1.2 739,034 - -0.7 739,034 - -0.3 739,034 - -0.5 739,034 - +0.2 739,034 - -0.3 739,034 - -1.0 739,034 - +0.7 739,034 - -1.2 739,181 - -0.7 739,223 - -0.3 739,347 - -0.3 739,409 - Pf1N1B4_644 0.14 +0.3 739,699 + Pf1N1B4_644 0.62 -0.3 739,700 - Pf1N1B4_644 0.62 -1.7 739,764 + Pf1N1B4_644 0.73 -2.6 739,765 - Pf1N1B4_644 0.73 +0.3 739,937 - +0.2 739,978 - +0.3 740,007 + +0.2 740,007 + -0.3 740,007 + -1.3 740,007 + +0.5 740,008 - -0.3 740,008 - +0.2 740,008 - +0.5 740,008 - -1.0 740,293 - Pf1N1B4_646 0.19 +0.0 740,293 - Pf1N1B4_646 0.19 +0.5 740,293 - Pf1N1B4_646 0.19 +0.6 740,293 - Pf1N1B4_646 0.19 -0.1 740,293 - Pf1N1B4_646 0.19 +0.2 740,293 - Pf1N1B4_646 0.19 -0.3 740,390 - Pf1N1B4_646 0.42 +0.3 740,484 - Pf1N1B4_646 0.64 +0.1 740,484 - Pf1N1B4_646 0.64 +0.0 740,484 - Pf1N1B4_646 0.64 +0.2 740,493 - Pf1N1B4_646 0.66 -0.6 740,493 - Pf1N1B4_646 0.66 +0.6 740,493 - Pf1N1B4_646 0.66 -0.8 740,493 - Pf1N1B4_646 0.66 +0.6 740,493 - Pf1N1B4_646 0.66 -0.5 740,493 - Pf1N1B4_646 0.66 +0.3 740,493 - Pf1N1B4_646 0.66 +0.3 740,493 - Pf1N1B4_646 0.66 -0.5 740,493 - Pf1N1B4_646 0.66 -1.1 740,493 - Pf1N1B4_646 0.66 -0.6 740,493 - Pf1N1B4_646 0.66 -0.7 740,493 - Pf1N1B4_646 0.66 -1.0 740,493 - Pf1N1B4_646 0.66 +0.4 740,493 - Pf1N1B4_646 0.66 +0.1 740,493 - Pf1N1B4_646 0.66 +0.5 740,493 - Pf1N1B4_646 0.66 +0.6 740,502 - Pf1N1B4_646 0.68 +0.1 740,502 - Pf1N1B4_646 0.68 +0.0 740,502 - Pf1N1B4_646 0.68 -1.1 740,502 - Pf1N1B4_646 0.68 +0.5 740,502 - Pf1N1B4_646 0.68 -0.3 740,502 - Pf1N1B4_646 0.68 -1.0 740,502 - Pf1N1B4_646 0.68 -1.2 740,502 - Pf1N1B4_646 0.68 +0.7 740,502 - Pf1N1B4_646 0.68 +0.2 740,502 - Pf1N1B4_646 0.68 -0.2 740,502 - Pf1N1B4_646 0.68 -0.0 740,548 - Pf1N1B4_646 0.79 +0.2 740,548 - Pf1N1B4_646 0.79 -0.2 740,548 - Pf1N1B4_646 0.79 -0.3 740,548 - Pf1N1B4_646 0.79 +0.1 740,628 - +0.4 740,723 - +1.0 740,723 - -0.2 740,723 - +0.5 740,723 - +0.7 740,723 - +0.1 740,723 - -0.4 740,723 - -0.3 740,723 - -1.1 740,723 - +0.3 740,723 - -1.1 740,723 - +0.4 740,723 - -0.3 740,723 - -1.4 740,723 - +1.0 740,723 - -1.1 740,723 - +0.4 740,723 - +0.7 740,723 - -0.4 740,723 - +0.1 740,723 - -1.8 740,806 - -0.0
Or see this region's nucleotide sequence