Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_436 and Pf1N1B4_437 are separated by 264 nucleotides
Pf1N1B4_436 - Cell division protein FtsH (EC 3.4.24.-), at 515,255 to 516,193
_436
Pf1N1B4_437 - hypothetical protein, at 516,458 to 516,589
_437
Position (kb) 516
517 Strain fitness (log2 ratio) -2
-1
0
1
2 at 515.464 kb on - strand, within Pf1N1B4_436 at 515.464 kb on - strand, within Pf1N1B4_436 at 515.466 kb on + strand, within Pf1N1B4_436 at 515.467 kb on - strand at 515.635 kb on + strand, within Pf1N1B4_436 at 515.654 kb on + strand, within Pf1N1B4_436 at 515.655 kb on - strand, within Pf1N1B4_436 at 515.892 kb on + strand, within Pf1N1B4_436 at 515.892 kb on + strand, within Pf1N1B4_436 at 515.893 kb on - strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.951 kb on + strand, within Pf1N1B4_436 at 515.975 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.090 kb on + strand, within Pf1N1B4_436 at 516.090 kb on + strand, within Pf1N1B4_436 at 516.129 kb on + strand at 516.242 kb on - strand at 516.315 kb on + strand at 516.316 kb on - strand at 516.410 kb on + strand at 516.411 kb on - strand at 516.415 kb on - strand at 516.514 kb on + strand, within Pf1N1B4_437 at 516.514 kb on + strand, within Pf1N1B4_437 at 516.542 kb on + strand, within Pf1N1B4_437 at 516.542 kb on + strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.563 kb on + strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.602 kb on + strand at 516.602 kb on + strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.604 kb on + strand at 516.794 kb on - strand at 516.897 kb on + strand at 516.959 kb on + strand at 517.077 kb on + strand at 517.079 kb on + strand at 517.079 kb on + strand at 517.183 kb on - strand at 517.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 515,464 - Pf1N1B4_436 0.22 -0.3 515,464 - Pf1N1B4_436 0.22 +0.1 515,466 + Pf1N1B4_436 0.22 +0.4 515,467 - +2.0 515,635 + Pf1N1B4_436 0.40 -0.0 515,654 + Pf1N1B4_436 0.42 -0.4 515,655 - Pf1N1B4_436 0.43 +0.7 515,892 + Pf1N1B4_436 0.68 -0.1 515,892 + Pf1N1B4_436 0.68 +0.2 515,893 - Pf1N1B4_436 0.68 -0.3 515,917 + Pf1N1B4_436 0.71 -0.0 515,917 + Pf1N1B4_436 0.71 +1.1 515,917 + Pf1N1B4_436 0.71 -0.4 515,917 + Pf1N1B4_436 0.71 -0.2 515,918 - Pf1N1B4_436 0.71 +0.1 515,918 - Pf1N1B4_436 0.71 -1.2 515,918 - Pf1N1B4_436 0.71 -0.8 515,918 - Pf1N1B4_436 0.71 -0.3 515,951 + Pf1N1B4_436 0.74 +0.7 515,975 - Pf1N1B4_436 0.77 +1.4 516,029 - Pf1N1B4_436 0.82 +1.4 516,029 - Pf1N1B4_436 0.82 +0.1 516,029 - Pf1N1B4_436 0.82 -1.0 516,090 + Pf1N1B4_436 0.89 -0.8 516,090 + Pf1N1B4_436 0.89 -0.1 516,129 + -0.6 516,242 - -1.2 516,315 + -1.0 516,316 - +0.3 516,410 + -0.8 516,411 - -1.8 516,415 - -0.5 516,514 + Pf1N1B4_437 0.42 -1.6 516,514 + Pf1N1B4_437 0.42 -1.0 516,542 + Pf1N1B4_437 0.64 -2.1 516,542 + Pf1N1B4_437 0.64 -0.7 516,543 - Pf1N1B4_437 0.64 +1.1 516,543 - Pf1N1B4_437 0.64 -0.6 516,543 - Pf1N1B4_437 0.64 -0.9 516,563 + Pf1N1B4_437 0.80 -0.8 516,564 - Pf1N1B4_437 0.80 -0.2 516,564 - Pf1N1B4_437 0.80 -0.4 516,564 - Pf1N1B4_437 0.80 -1.0 516,564 - Pf1N1B4_437 0.80 -0.4 516,602 + +0.8 516,602 + -0.1 516,603 - +1.7 516,603 - -0.8 516,603 - -1.1 516,603 - -0.2 516,604 + +0.6 516,794 - +0.7 516,897 + +0.6 516,959 + +0.9 517,077 + -0.6 517,079 + +0.8 517,079 + -0.6 517,183 - -1.2 517,585 + +0.4
Or see this region's nucleotide sequence