Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_196 and Pf1N1B4_197 overlap by 4 nucleotides Pf1N1B4_197 and Pf1N1B4_198 overlap by 4 nucleotides Pf1N1B4_198 and Pf1N1B4_199 overlap by 4 nucleotides Pf1N1B4_199 and Pf1N1B4_200 are separated by 35 nucleotides
Pf1N1B4_196 - FIG137594: Putative iron-regulated membrane protein, at 244,571 to 245,776
_196
Pf1N1B4_197 - FIG139991: Putative thiamine pyrophosphate-requiring enzyme, at 245,773 to 246,315
_197
Pf1N1B4_198 - FIG137877: Hypothetical protein in pyoverdin gene cluster, at 246,312 to 246,632
_198
Pf1N1B4_199 - FIG049111: Hypothetical protein in pyoverdin gene cluster, at 246,629 to 247,204
_199
Pf1N1B4_200 - FIG014801: Cation ABC transporter, periplasmic cation-binding protein, at 247,240 to 248,169
_200
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 244.889 kb on + strand, within Pf1N1B4_196 at 244.889 kb on + strand, within Pf1N1B4_196 at 244.889 kb on + strand, within Pf1N1B4_196 at 244.890 kb on - strand at 244.890 kb on - strand, within Pf1N1B4_196 at 244.890 kb on - strand, within Pf1N1B4_196 at 245.255 kb on - strand, within Pf1N1B4_196 at 245.414 kb on + strand, within Pf1N1B4_196 at 245.414 kb on + strand, within Pf1N1B4_196 at 245.414 kb on + strand, within Pf1N1B4_196 at 245.483 kb on + strand, within Pf1N1B4_196 at 245.483 kb on + strand, within Pf1N1B4_196 at 245.484 kb on - strand, within Pf1N1B4_196 at 245.887 kb on + strand, within Pf1N1B4_197 at 245.888 kb on - strand, within Pf1N1B4_197 at 245.888 kb on - strand, within Pf1N1B4_197 at 246.025 kb on + strand, within Pf1N1B4_197 at 246.025 kb on + strand at 246.337 kb on + strand at 246.338 kb on - strand at 246.338 kb on - strand at 246.338 kb on - strand at 246.341 kb on - strand at 246.564 kb on + strand, within Pf1N1B4_198 at 246.564 kb on + strand, within Pf1N1B4_198 at 246.564 kb on + strand at 246.564 kb on + strand, within Pf1N1B4_198 at 246.565 kb on - strand, within Pf1N1B4_198 at 246.565 kb on - strand, within Pf1N1B4_198 at 246.565 kb on - strand, within Pf1N1B4_198 at 246.565 kb on - strand, within Pf1N1B4_198 at 246.634 kb on + strand at 246.634 kb on + strand at 246.635 kb on - strand at 246.635 kb on - strand at 246.635 kb on - strand at 246.686 kb on + strand at 246.686 kb on + strand at 246.686 kb on + strand at 246.686 kb on + strand at 246.686 kb on + strand at 246.686 kb on + strand at 246.686 kb on + strand at 246.687 kb on - strand, within Pf1N1B4_199 at 246.687 kb on - strand, within Pf1N1B4_199 at 246.687 kb on - strand, within Pf1N1B4_199 at 246.687 kb on - strand, within Pf1N1B4_199 at 246.687 kb on - strand, within Pf1N1B4_199 at 246.687 kb on - strand, within Pf1N1B4_199 at 246.687 kb on - strand, within Pf1N1B4_199 at 246.824 kb on - strand, within Pf1N1B4_199 at 246.824 kb on - strand, within Pf1N1B4_199 at 246.824 kb on - strand, within Pf1N1B4_199 at 246.824 kb on - strand at 246.824 kb on - strand, within Pf1N1B4_199 at 246.824 kb on - strand, within Pf1N1B4_199 at 246.828 kb on - strand, within Pf1N1B4_199 at 246.828 kb on - strand, within Pf1N1B4_199 at 246.996 kb on - strand, within Pf1N1B4_199 at 246.996 kb on - strand, within Pf1N1B4_199 at 247.245 kb on + strand at 247.246 kb on - strand at 247.246 kb on - strand at 247.246 kb on - strand at 247.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 244,889 + Pf1N1B4_196 0.26 -0.3 244,889 + Pf1N1B4_196 0.26 +0.2 244,889 + Pf1N1B4_196 0.26 -0.7 244,890 - -0.5 244,890 - Pf1N1B4_196 0.26 -0.4 244,890 - Pf1N1B4_196 0.26 -1.6 245,255 - Pf1N1B4_196 0.57 -1.1 245,414 + Pf1N1B4_196 0.70 -1.5 245,414 + Pf1N1B4_196 0.70 +0.5 245,414 + Pf1N1B4_196 0.70 +0.1 245,483 + Pf1N1B4_196 0.76 +0.7 245,483 + Pf1N1B4_196 0.76 -0.1 245,484 - Pf1N1B4_196 0.76 -0.9 245,887 + Pf1N1B4_197 0.21 -0.8 245,888 - Pf1N1B4_197 0.21 -1.1 245,888 - Pf1N1B4_197 0.21 -0.8 246,025 + Pf1N1B4_197 0.46 -1.4 246,025 + -0.1 246,337 + -1.2 246,338 - -0.5 246,338 - -0.1 246,338 - +0.9 246,341 - -0.6 246,564 + Pf1N1B4_198 0.79 -1.6 246,564 + Pf1N1B4_198 0.79 +0.5 246,564 + -1.5 246,564 + Pf1N1B4_198 0.79 -1.3 246,565 - Pf1N1B4_198 0.79 +0.2 246,565 - Pf1N1B4_198 0.79 -1.5 246,565 - Pf1N1B4_198 0.79 +2.1 246,565 - Pf1N1B4_198 0.79 -1.3 246,634 + -1.5 246,634 + +0.6 246,635 - -0.1 246,635 - +0.9 246,635 - +3.8 246,686 + -0.7 246,686 + -0.9 246,686 + +0.4 246,686 + -0.6 246,686 + +0.3 246,686 + -1.5 246,686 + -0.5 246,687 - Pf1N1B4_199 0.10 +1.9 246,687 - Pf1N1B4_199 0.10 +0.4 246,687 - Pf1N1B4_199 0.10 -1.1 246,687 - Pf1N1B4_199 0.10 +1.5 246,687 - Pf1N1B4_199 0.10 +0.0 246,687 - Pf1N1B4_199 0.10 +0.6 246,687 - Pf1N1B4_199 0.10 +0.9 246,824 - Pf1N1B4_199 0.34 +1.3 246,824 - Pf1N1B4_199 0.34 +1.5 246,824 - Pf1N1B4_199 0.34 +1.0 246,824 - +0.8 246,824 - Pf1N1B4_199 0.34 -0.7 246,824 - Pf1N1B4_199 0.34 +0.1 246,828 - Pf1N1B4_199 0.35 -1.1 246,828 - Pf1N1B4_199 0.35 +0.5 246,996 - Pf1N1B4_199 0.64 -1.9 246,996 - Pf1N1B4_199 0.64 -1.1 247,245 + -0.5 247,246 - +0.5 247,246 - -0.6 247,246 - +0.5 247,246 - +1.5
Or see this region's nucleotide sequence