Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_132 and Pf1N1B4_133 are separated by 144 nucleotides Pf1N1B4_133 and Pf1N1B4_134 are separated by 301 nucleotides
Pf1N1B4_132 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 145,701 to 147,038
_132
Pf1N1B4_133 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis, at 147,183 to 147,665
_133
Pf1N1B4_134 - pyoverdine-specific efflux macA-like protein, at 147,967 to 149,127
_134
Position (kb) 147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 146.185 kb on + strand, within Pf1N1B4_132 at 146.186 kb on - strand, within Pf1N1B4_132 at 146.186 kb on - strand, within Pf1N1B4_132 at 146.713 kb on + strand, within Pf1N1B4_132 at 146.713 kb on + strand, within Pf1N1B4_132 at 146.714 kb on - strand, within Pf1N1B4_132 at 146.731 kb on + strand, within Pf1N1B4_132 at 146.732 kb on - strand, within Pf1N1B4_132 at 146.782 kb on + strand, within Pf1N1B4_132 at 147.421 kb on + strand, within Pf1N1B4_133 at 147.422 kb on - strand at 147.442 kb on - strand at 147.442 kb on - strand, within Pf1N1B4_133 at 147.442 kb on - strand, within Pf1N1B4_133 at 147.442 kb on - strand, within Pf1N1B4_133 at 147.586 kb on - strand, within Pf1N1B4_133 at 147.616 kb on - strand, within Pf1N1B4_133 at 147.635 kb on - strand at 147.835 kb on + strand at 148.147 kb on + strand, within Pf1N1B4_134 at 148.147 kb on + strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.242 kb on - strand, within Pf1N1B4_134 at 148.352 kb on - strand, within Pf1N1B4_134 at 148.526 kb on - strand, within Pf1N1B4_134 at 148.526 kb on - strand, within Pf1N1B4_134 at 148.526 kb on - strand, within Pf1N1B4_134
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 146,185 + Pf1N1B4_132 0.36 -0.8 146,186 - Pf1N1B4_132 0.36 -1.1 146,186 - Pf1N1B4_132 0.36 +0.2 146,713 + Pf1N1B4_132 0.76 -0.1 146,713 + Pf1N1B4_132 0.76 -0.2 146,714 - Pf1N1B4_132 0.76 -1.5 146,731 + Pf1N1B4_132 0.77 +0.3 146,732 - Pf1N1B4_132 0.77 -0.2 146,782 + Pf1N1B4_132 0.81 +0.7 147,421 + Pf1N1B4_133 0.49 -3.0 147,422 - -0.1 147,442 - -1.6 147,442 - Pf1N1B4_133 0.54 -1.4 147,442 - Pf1N1B4_133 0.54 -0.6 147,442 - Pf1N1B4_133 0.54 -0.9 147,586 - Pf1N1B4_133 0.83 +1.9 147,616 - Pf1N1B4_133 0.90 -0.9 147,635 - -0.3 147,835 + -1.3 148,147 + Pf1N1B4_134 0.16 -1.3 148,147 + Pf1N1B4_134 0.16 +0.1 148,148 - Pf1N1B4_134 0.16 -0.3 148,148 - Pf1N1B4_134 0.16 -0.8 148,148 - Pf1N1B4_134 0.16 +1.5 148,148 - Pf1N1B4_134 0.16 -0.6 148,241 + Pf1N1B4_134 0.24 -0.5 148,241 + Pf1N1B4_134 0.24 -0.5 148,241 + Pf1N1B4_134 0.24 -0.3 148,241 + Pf1N1B4_134 0.24 +1.0 148,242 - Pf1N1B4_134 0.24 +0.1 148,352 - Pf1N1B4_134 0.33 +0.4 148,526 - Pf1N1B4_134 0.48 -0.3 148,526 - Pf1N1B4_134 0.48 -1.3 148,526 - Pf1N1B4_134 0.48 -0.1
Or see this region's nucleotide sequence