Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_100 and Pf1N1B4_101 are separated by 64 nucleotides Pf1N1B4_101 and Pf1N1B4_102 are separated by 374 nucleotides Pf1N1B4_102 and Pf1N1B4_103 are separated by 108 nucleotides
Pf1N1B4_100 - FIG00953437: hypothetical protein, at 105,855 to 106,082
_100
Pf1N1B4_101 - hypothetical protein, at 106,147 to 106,311
_101
Pf1N1B4_102 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 106,686 to 108,446
_102
Pf1N1B4_103 - Histidine permease YuiF, at 108,555 to 109,871
_103
Position (kb) 106
107
108
109 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 105.791 kb on - strand at 105.828 kb on - strand at 105.828 kb on - strand at 105.829 kb on + strand at 105.830 kb on - strand at 105.830 kb on - strand at 105.833 kb on + strand at 105.833 kb on + strand at 105.833 kb on + strand at 105.834 kb on - strand at 105.834 kb on - strand at 105.834 kb on - strand at 105.834 kb on - strand at 105.834 kb on - strand at 105.834 kb on - strand at 105.834 kb on - strand at 105.834 kb on - strand at 105.845 kb on + strand at 105.846 kb on - strand at 105.854 kb on + strand at 105.885 kb on + strand, within Pf1N1B4_100 at 105.885 kb on + strand, within Pf1N1B4_100 at 105.885 kb on + strand, within Pf1N1B4_100 at 105.886 kb on - strand, within Pf1N1B4_100 at 106.226 kb on + strand, within Pf1N1B4_101 at 106.226 kb on + strand, within Pf1N1B4_101 at 106.227 kb on - strand, within Pf1N1B4_101 at 106.293 kb on + strand, within Pf1N1B4_101 at 106.424 kb on + strand at 106.424 kb on + strand at 106.424 kb on + strand at 106.424 kb on + strand at 106.428 kb on - strand at 106.428 kb on - strand at 106.501 kb on + strand at 106.502 kb on - strand at 106.549 kb on + strand at 106.550 kb on - strand at 106.677 kb on + strand at 107.716 kb on - strand, within Pf1N1B4_102 at 107.921 kb on - strand, within Pf1N1B4_102 at 107.974 kb on + strand, within Pf1N1B4_102 at 108.091 kb on + strand, within Pf1N1B4_102 at 108.196 kb on + strand, within Pf1N1B4_102 at 108.408 kb on + strand at 108.409 kb on - strand at 108.409 kb on - strand at 108.409 kb on - strand at 108.495 kb on + strand at 108.495 kb on + strand at 108.556 kb on + strand at 108.557 kb on - strand at 108.557 kb on - strand at 108.605 kb on - strand at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand, within Pf1N1B4_103 at 109.175 kb on - strand at 109.219 kb on + strand, within Pf1N1B4_103 at 109.324 kb on - strand, within Pf1N1B4_103 at 109.399 kb on + strand, within Pf1N1B4_103 at 109.399 kb on + strand, within Pf1N1B4_103 at 109.399 kb on + strand, within Pf1N1B4_103 at 109.400 kb on - strand, within Pf1N1B4_103
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 105,791 - +0.3 105,828 - -1.9 105,828 - -0.3 105,829 + -0.3 105,830 - -0.7 105,830 - +1.3 105,833 + +0.8 105,833 + -0.8 105,833 + -1.1 105,834 - +0.7 105,834 - +0.4 105,834 - +0.4 105,834 - +0.8 105,834 - +0.7 105,834 - +0.4 105,834 - +0.0 105,834 - -0.1 105,845 + -0.2 105,846 - -0.5 105,854 + -0.5 105,885 + Pf1N1B4_100 0.13 -0.8 105,885 + Pf1N1B4_100 0.13 +0.7 105,885 + Pf1N1B4_100 0.13 +0.0 105,886 - Pf1N1B4_100 0.14 +0.6 106,226 + Pf1N1B4_101 0.48 -1.1 106,226 + Pf1N1B4_101 0.48 -0.3 106,227 - Pf1N1B4_101 0.48 +0.7 106,293 + Pf1N1B4_101 0.88 +0.4 106,424 + +1.5 106,424 + -0.3 106,424 + -2.3 106,424 + -0.8 106,428 - -0.6 106,428 - +0.0 106,501 + +2.5 106,502 - +1.5 106,549 + -2.1 106,550 - +1.5 106,677 + +0.2 107,716 - Pf1N1B4_102 0.58 -0.2 107,921 - Pf1N1B4_102 0.70 -0.3 107,974 + Pf1N1B4_102 0.73 -0.5 108,091 + Pf1N1B4_102 0.80 -0.9 108,196 + Pf1N1B4_102 0.86 -1.3 108,408 + -0.4 108,409 - -0.5 108,409 - +0.5 108,409 - -0.2 108,495 + +1.2 108,495 + -0.3 108,556 + -0.2 108,557 - -0.1 108,557 - +0.3 108,605 - +1.2 109,175 - Pf1N1B4_103 0.47 +0.7 109,175 - Pf1N1B4_103 0.47 +0.5 109,175 - Pf1N1B4_103 0.47 -0.8 109,175 - Pf1N1B4_103 0.47 +0.4 109,175 - Pf1N1B4_103 0.47 +1.5 109,175 - Pf1N1B4_103 0.47 +0.8 109,175 - Pf1N1B4_103 0.47 +0.4 109,175 - Pf1N1B4_103 0.47 -1.1 109,175 - Pf1N1B4_103 0.47 +0.1 109,175 - Pf1N1B4_103 0.47 +0.5 109,175 - -0.1 109,219 + Pf1N1B4_103 0.50 +0.6 109,324 - Pf1N1B4_103 0.58 +0.0 109,399 + Pf1N1B4_103 0.64 -0.5 109,399 + Pf1N1B4_103 0.64 -0.9 109,399 + Pf1N1B4_103 0.64 -0.6 109,400 - Pf1N1B4_103 0.64 +3.1
Or see this region's nucleotide sequence