Experiment: Time16-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_749 and Pf1N1B4_750 overlap by 4 nucleotides Pf1N1B4_750 and Pf1N1B4_751 are separated by 178 nucleotides
Pf1N1B4_749 - hypothetical protein, at 852,642 to 852,824
_749
Pf1N1B4_750 - hypothetical protein, at 852,821 to 853,477
_750
Pf1N1B4_751 - hypothetical protein, at 853,656 to 854,096
_751
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1 at 851.951 kb on + strand at 852.050 kb on + strand at 852.102 kb on + strand at 852.138 kb on + strand at 852.220 kb on + strand at 852.220 kb on + strand at 852.267 kb on + strand at 852.267 kb on + strand at 852.271 kb on + strand at 852.393 kb on + strand at 852.393 kb on + strand at 852.393 kb on + strand at 852.394 kb on - strand at 852.405 kb on + strand at 852.405 kb on + strand at 852.405 kb on + strand at 852.497 kb on - strand at 852.515 kb on + strand at 852.516 kb on - strand at 852.562 kb on + strand at 852.794 kb on + strand, within Pf1N1B4_749 at 852.795 kb on - strand, within Pf1N1B4_749 at 852.795 kb on - strand, within Pf1N1B4_749 at 852.850 kb on + strand at 852.850 kb on + strand at 852.850 kb on + strand at 852.850 kb on + strand at 852.851 kb on - strand at 852.936 kb on + strand, within Pf1N1B4_750 at 852.936 kb on + strand, within Pf1N1B4_750 at 852.937 kb on - strand, within Pf1N1B4_750 at 853.188 kb on + strand, within Pf1N1B4_750 at 853.248 kb on + strand at 853.248 kb on + strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.294 kb on + strand, within Pf1N1B4_750 at 853.294 kb on + strand, within Pf1N1B4_750 at 853.311 kb on - strand, within Pf1N1B4_750 at 853.494 kb on + strand at 853.494 kb on + strand at 853.495 kb on - strand at 853.495 kb on - strand at 853.529 kb on + strand at 853.530 kb on - strand at 853.530 kb on - strand at 853.598 kb on - strand at 853.818 kb on + strand, within Pf1N1B4_751 at 853.818 kb on + strand, within Pf1N1B4_751 at 853.819 kb on - strand, within Pf1N1B4_751 at 853.819 kb on - strand, within Pf1N1B4_751 at 854.083 kb on - strand at 854.213 kb on + strand at 854.300 kb on + strand at 854.300 kb on + strand at 854.361 kb on - strand at 854.421 kb on + strand at 854.422 kb on - strand at 854.422 kb on - strand at 854.434 kb on + strand at 854.435 kb on - strand at 854.435 kb on - strand at 854.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time16-nophage remove 851,951 + -1.3 852,050 + -2.2 852,102 + -0.2 852,138 + +0.9 852,220 + +0.3 852,220 + -0.9 852,267 + -0.5 852,267 + -0.3 852,271 + -0.6 852,393 + -0.8 852,393 + +0.8 852,393 + -0.3 852,394 - -0.5 852,405 + -0.5 852,405 + -1.8 852,405 + -0.1 852,497 - -1.8 852,515 + -0.1 852,516 - +0.5 852,562 + +0.6 852,794 + Pf1N1B4_749 0.83 -0.3 852,795 - Pf1N1B4_749 0.84 -0.1 852,795 - Pf1N1B4_749 0.84 -0.7 852,850 + -0.6 852,850 + +1.2 852,850 + -0.7 852,850 + -0.3 852,851 - +1.0 852,936 + Pf1N1B4_750 0.18 -0.1 852,936 + Pf1N1B4_750 0.18 +0.9 852,937 - Pf1N1B4_750 0.18 -1.1 853,188 + Pf1N1B4_750 0.56 -1.0 853,248 + +0.5 853,248 + Pf1N1B4_750 0.65 -0.3 853,249 - Pf1N1B4_750 0.65 +0.2 853,249 - Pf1N1B4_750 0.65 -1.7 853,249 - Pf1N1B4_750 0.65 -0.1 853,249 - Pf1N1B4_750 0.65 -1.1 853,249 - Pf1N1B4_750 0.65 +0.6 853,249 - Pf1N1B4_750 0.65 +0.1 853,249 - Pf1N1B4_750 0.65 -0.3 853,249 - Pf1N1B4_750 0.65 -0.5 853,294 + Pf1N1B4_750 0.72 -0.1 853,294 + Pf1N1B4_750 0.72 -0.5 853,311 - Pf1N1B4_750 0.75 +0.7 853,494 + -1.5 853,494 + -0.8 853,495 - -0.2 853,495 - -0.3 853,529 + -0.6 853,530 - +0.9 853,530 - -0.4 853,598 - -0.3 853,818 + Pf1N1B4_751 0.37 -0.4 853,818 + Pf1N1B4_751 0.37 -0.4 853,819 - Pf1N1B4_751 0.37 -0.8 853,819 - Pf1N1B4_751 0.37 +1.1 854,083 - -0.4 854,213 + -0.3 854,300 + -0.8 854,300 + -0.1 854,361 - -0.0 854,421 + -2.0 854,422 - -0.7 854,422 - -0.7 854,434 + -0.1 854,435 - -0.6 854,435 - +0.6 854,438 + -2.1
Or see this region's nucleotide sequence