Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4462

Experiment: Time16-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4461 and Pf1N1B4_4462 are separated by 119 nucleotidesPf1N1B4_4462 and Pf1N1B4_4463 are separated by 168 nucleotides Pf1N1B4_4461 - Glutathione-regulated potassium-efflux system protein KefB, at 4,921,100 to 4,922,908 _4461 Pf1N1B4_4462 - LysR family transcriptional regulator YbhD, at 4,923,028 to 4,923,918 _4462 Pf1N1B4_4463 - FIG00958979: hypothetical protein, at 4,924,087 to 4,925,169 _4463 Position (kb) 4923 4924Strain fitness (log2 ratio) -1 0 1 2at 4922.865 kb on - strandat 4923.258 kb on - strand, within Pf1N1B4_4462at 4923.575 kb on + strand, within Pf1N1B4_4462at 4923.575 kb on + strand, within Pf1N1B4_4462at 4923.778 kb on - strandat 4923.784 kb on + strand, within Pf1N1B4_4462at 4923.785 kb on - strand, within Pf1N1B4_4462at 4924.021 kb on + strandat 4924.021 kb on + strandat 4924.021 kb on + strandat 4924.122 kb on + strandat 4924.140 kb on - strandat 4924.287 kb on - strand, within Pf1N1B4_4463at 4924.309 kb on + strandat 4924.309 kb on + strand, within Pf1N1B4_4463at 4924.310 kb on - strandat 4924.513 kb on + strand, within Pf1N1B4_4463at 4924.513 kb on + strand, within Pf1N1B4_4463at 4924.513 kb on + strand, within Pf1N1B4_4463at 4924.514 kb on - strand, within Pf1N1B4_4463at 4924.514 kb on - strand, within Pf1N1B4_4463at 4924.756 kb on - strand, within Pf1N1B4_4463

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Per-strain Table

Position Strand Gene LocusTag Fraction Time16-nophage
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4,922,865 - -0.9
4,923,258 - Pf1N1B4_4462 0.26 -0.4
4,923,575 + Pf1N1B4_4462 0.61 -1.3
4,923,575 + Pf1N1B4_4462 0.61 +0.2
4,923,778 - -0.4
4,923,784 + Pf1N1B4_4462 0.85 +0.2
4,923,785 - Pf1N1B4_4462 0.85 -0.6
4,924,021 + -0.5
4,924,021 + +0.6
4,924,021 + +0.2
4,924,122 + -0.2
4,924,140 - -0.6
4,924,287 - Pf1N1B4_4463 0.18 -0.8
4,924,309 + -0.4
4,924,309 + Pf1N1B4_4463 0.20 +1.2
4,924,310 - +1.2
4,924,513 + Pf1N1B4_4463 0.39 -0.4
4,924,513 + Pf1N1B4_4463 0.39 -0.2
4,924,513 + Pf1N1B4_4463 0.39 +0.2
4,924,514 - Pf1N1B4_4463 0.39 +1.8
4,924,514 - Pf1N1B4_4463 0.39 +1.8
4,924,756 - Pf1N1B4_4463 0.62 -0.6

Or see this region's nucleotide sequence