Experiment: Time16-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3715 and Pf1N1B4_3716 are separated by 170 nucleotides Pf1N1B4_3716 and Pf1N1B4_3717 are separated by 52 nucleotides Pf1N1B4_3717 and Pf1N1B4_3718 overlap by 4 nucleotides Pf1N1B4_3718 and Pf1N1B4_3719 are separated by 56 nucleotides Pf1N1B4_3719 and Pf1N1B4_3720 are separated by 83 nucleotides
Pf1N1B4_3715 - Cobalamin synthase, at 4,123,380 to 4,124,111
_3715
Pf1N1B4_3716 - Transcriptional regulator, MarR family, at 4,124,282 to 4,124,668
_3716
Pf1N1B4_3717 - Permeases of the major facilitator superfamily, at 4,124,721 to 4,125,929
_3717
Pf1N1B4_3718 - hypothetical protein, at 4,125,926 to 4,126,048
_3718
Pf1N1B4_3719 - Glutathione peroxidase family protein, at 4,126,105 to 4,126,656
_3719
Pf1N1B4_3720 - Long-chain fatty acid transport protein, at 4,126,740 to 4,128,008
_3720
Position (kb) 4124
4125
4126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4123.736 kb on - strand at 4123.736 kb on - strand at 4123.848 kb on + strand, within Pf1N1B4_3715 at 4123.848 kb on + strand, within Pf1N1B4_3715 at 4123.848 kb on + strand, within Pf1N1B4_3715 at 4123.848 kb on + strand, within Pf1N1B4_3715 at 4123.848 kb on + strand, within Pf1N1B4_3715 at 4123.848 kb on + strand at 4123.849 kb on - strand, within Pf1N1B4_3715 at 4123.849 kb on - strand, within Pf1N1B4_3715 at 4123.849 kb on - strand, within Pf1N1B4_3715 at 4123.849 kb on - strand, within Pf1N1B4_3715 at 4123.967 kb on - strand, within Pf1N1B4_3715 at 4124.049 kb on - strand at 4124.214 kb on + strand at 4124.214 kb on + strand at 4124.214 kb on + strand at 4124.214 kb on + strand at 4124.214 kb on + strand at 4124.214 kb on + strand at 4124.214 kb on + strand at 4124.214 kb on + strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.215 kb on - strand at 4124.219 kb on - strand at 4124.219 kb on - strand at 4124.219 kb on - strand at 4124.251 kb on - strand at 4124.251 kb on - strand at 4124.252 kb on + strand at 4124.254 kb on + strand at 4124.254 kb on + strand at 4124.254 kb on + strand at 4124.254 kb on + strand at 4124.255 kb on - strand at 4124.255 kb on - strand at 4124.255 kb on - strand at 4124.263 kb on + strand at 4124.290 kb on + strand at 4124.328 kb on - strand, within Pf1N1B4_3716 at 4124.697 kb on + strand at 4124.812 kb on + strand at 4124.813 kb on - strand at 4124.973 kb on + strand, within Pf1N1B4_3717 at 4125.429 kb on + strand, within Pf1N1B4_3717 at 4125.567 kb on + strand, within Pf1N1B4_3717 at 4125.567 kb on + strand, within Pf1N1B4_3717 at 4125.567 kb on + strand, within Pf1N1B4_3717 at 4125.567 kb on + strand, within Pf1N1B4_3717 at 4125.568 kb on - strand, within Pf1N1B4_3717 at 4125.630 kb on + strand, within Pf1N1B4_3717 at 4125.631 kb on - strand, within Pf1N1B4_3717 at 4125.798 kb on + strand, within Pf1N1B4_3717 at 4125.798 kb on + strand, within Pf1N1B4_3717 at 4125.798 kb on + strand, within Pf1N1B4_3717 at 4125.798 kb on + strand at 4125.798 kb on + strand, within Pf1N1B4_3717 at 4125.799 kb on - strand at 4125.799 kb on - strand, within Pf1N1B4_3717 at 4125.816 kb on + strand at 4125.817 kb on - strand at 4125.969 kb on + strand, within Pf1N1B4_3718 at 4125.970 kb on - strand, within Pf1N1B4_3718 at 4126.066 kb on + strand at 4126.187 kb on + strand, within Pf1N1B4_3719 at 4126.187 kb on + strand, within Pf1N1B4_3719 at 4126.187 kb on + strand, within Pf1N1B4_3719 at 4126.188 kb on - strand, within Pf1N1B4_3719 at 4126.188 kb on - strand, within Pf1N1B4_3719 at 4126.324 kb on + strand, within Pf1N1B4_3719 at 4126.333 kb on + strand, within Pf1N1B4_3719 at 4126.423 kb on + strand, within Pf1N1B4_3719 at 4126.424 kb on - strand, within Pf1N1B4_3719 at 4126.432 kb on + strand, within Pf1N1B4_3719 at 4126.432 kb on + strand, within Pf1N1B4_3719 at 4126.540 kb on + strand, within Pf1N1B4_3719 at 4126.540 kb on + strand, within Pf1N1B4_3719 at 4126.546 kb on + strand, within Pf1N1B4_3719 at 4126.546 kb on + strand, within Pf1N1B4_3719 at 4126.546 kb on + strand, within Pf1N1B4_3719 at 4126.546 kb on + strand, within Pf1N1B4_3719 at 4126.546 kb on + strand at 4126.668 kb on + strand at 4126.687 kb on - strand at 4126.750 kb on + strand at 4126.750 kb on + strand at 4126.750 kb on + strand at 4126.750 kb on + strand at 4126.750 kb on + strand at 4126.751 kb on - strand at 4126.780 kb on + strand at 4126.780 kb on + strand at 4126.780 kb on + strand at 4126.780 kb on + strand at 4126.781 kb on - strand at 4126.781 kb on - strand at 4126.781 kb on - strand at 4126.781 kb on - strand at 4126.781 kb on - strand at 4126.789 kb on + strand at 4126.790 kb on - strand at 4126.801 kb on + strand at 4126.801 kb on + strand at 4126.802 kb on - strand at 4126.802 kb on - strand at 4126.802 kb on - strand at 4126.802 kb on - strand at 4126.802 kb on - strand at 4126.802 kb on - strand at 4126.852 kb on + strand at 4126.852 kb on + strand at 4126.852 kb on + strand at 4126.852 kb on + strand at 4126.852 kb on + strand at 4126.853 kb on - strand at 4126.853 kb on - strand at 4126.858 kb on + strand at 4126.858 kb on + strand at 4126.858 kb on + strand at 4126.858 kb on + strand at 4126.859 kb on - strand at 4126.859 kb on - strand at 4126.859 kb on - strand at 4126.863 kb on + strand at 4126.863 kb on + strand at 4126.863 kb on + strand at 4126.864 kb on - strand at 4126.864 kb on - strand at 4126.864 kb on - strand at 4126.864 kb on - strand at 4126.864 kb on - strand at 4126.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time16-nophage remove 4,123,736 - +0.8 4,123,736 - -0.6 4,123,848 + Pf1N1B4_3715 0.64 -1.1 4,123,848 + Pf1N1B4_3715 0.64 -1.3 4,123,848 + Pf1N1B4_3715 0.64 +1.6 4,123,848 + Pf1N1B4_3715 0.64 -0.4 4,123,848 + Pf1N1B4_3715 0.64 -0.2 4,123,848 + +0.4 4,123,849 - Pf1N1B4_3715 0.64 +0.4 4,123,849 - Pf1N1B4_3715 0.64 +0.4 4,123,849 - Pf1N1B4_3715 0.64 -0.0 4,123,849 - Pf1N1B4_3715 0.64 -1.7 4,123,967 - Pf1N1B4_3715 0.80 +0.4 4,124,049 - -1.0 4,124,214 + -0.6 4,124,214 + -0.2 4,124,214 + +0.4 4,124,214 + -0.6 4,124,214 + -0.0 4,124,214 + -0.6 4,124,214 + +0.6 4,124,214 + -0.2 4,124,215 - +0.4 4,124,215 - -1.2 4,124,215 - -0.3 4,124,215 - +0.7 4,124,215 - +1.4 4,124,215 - +0.0 4,124,215 - +1.4 4,124,215 - -0.3 4,124,215 - +0.1 4,124,215 - +0.7 4,124,215 - -1.0 4,124,219 - -0.5 4,124,219 - +0.1 4,124,219 - -0.1 4,124,251 - -3.0 4,124,251 - +0.3 4,124,252 + -0.6 4,124,254 + +0.8 4,124,254 + -0.2 4,124,254 + +0.4 4,124,254 + -1.8 4,124,255 - +0.5 4,124,255 - +0.3 4,124,255 - -0.8 4,124,263 + +1.4 4,124,290 + +0.8 4,124,328 - Pf1N1B4_3716 0.12 -0.4 4,124,697 + +1.8 4,124,812 + -0.5 4,124,813 - -0.6 4,124,973 + Pf1N1B4_3717 0.21 -1.0 4,125,429 + Pf1N1B4_3717 0.59 -1.3 4,125,567 + Pf1N1B4_3717 0.70 -0.8 4,125,567 + Pf1N1B4_3717 0.70 -1.0 4,125,567 + Pf1N1B4_3717 0.70 -1.1 4,125,567 + Pf1N1B4_3717 0.70 -0.6 4,125,568 - Pf1N1B4_3717 0.70 -0.8 4,125,630 + Pf1N1B4_3717 0.75 +0.1 4,125,631 - Pf1N1B4_3717 0.75 -1.5 4,125,798 + Pf1N1B4_3717 0.89 -2.1 4,125,798 + Pf1N1B4_3717 0.89 -0.3 4,125,798 + Pf1N1B4_3717 0.89 +0.7 4,125,798 + -1.5 4,125,798 + Pf1N1B4_3717 0.89 +0.6 4,125,799 - +2.4 4,125,799 - Pf1N1B4_3717 0.89 +0.8 4,125,816 + -0.5 4,125,817 - +0.4 4,125,969 + Pf1N1B4_3718 0.35 +1.0 4,125,970 - Pf1N1B4_3718 0.36 -0.8 4,126,066 + +0.2 4,126,187 + Pf1N1B4_3719 0.15 -0.4 4,126,187 + Pf1N1B4_3719 0.15 -1.2 4,126,187 + Pf1N1B4_3719 0.15 -0.5 4,126,188 - Pf1N1B4_3719 0.15 -0.4 4,126,188 - Pf1N1B4_3719 0.15 +0.2 4,126,324 + Pf1N1B4_3719 0.40 -1.5 4,126,333 + Pf1N1B4_3719 0.41 +1.1 4,126,423 + Pf1N1B4_3719 0.58 +2.7 4,126,424 - Pf1N1B4_3719 0.58 -0.9 4,126,432 + Pf1N1B4_3719 0.59 -1.0 4,126,432 + Pf1N1B4_3719 0.59 -1.7 4,126,540 + Pf1N1B4_3719 0.79 -0.1 4,126,540 + Pf1N1B4_3719 0.79 +0.3 4,126,546 + Pf1N1B4_3719 0.80 -0.2 4,126,546 + Pf1N1B4_3719 0.80 -0.7 4,126,546 + Pf1N1B4_3719 0.80 -1.2 4,126,546 + Pf1N1B4_3719 0.80 +0.0 4,126,546 + +0.3 4,126,668 + -0.7 4,126,687 - +0.4 4,126,750 + +1.3 4,126,750 + -1.1 4,126,750 + +1.8 4,126,750 + +0.3 4,126,750 + +0.3 4,126,751 - +0.8 4,126,780 + +0.8 4,126,780 + -0.5 4,126,780 + +1.3 4,126,780 + -0.2 4,126,781 - +0.8 4,126,781 - +0.2 4,126,781 - +1.3 4,126,781 - -0.1 4,126,781 - -0.5 4,126,789 + +0.1 4,126,790 - -0.5 4,126,801 + +0.3 4,126,801 + +0.7 4,126,802 - -0.3 4,126,802 - -1.4 4,126,802 - +0.3 4,126,802 - +0.3 4,126,802 - -0.2 4,126,802 - +0.3 4,126,852 + +0.8 4,126,852 + +1.9 4,126,852 + -0.2 4,126,852 + +0.0 4,126,852 + -0.2 4,126,853 - -0.1 4,126,853 - +1.9 4,126,858 + +0.8 4,126,858 + +1.0 4,126,858 + +1.3 4,126,858 + +0.6 4,126,859 - -0.4 4,126,859 - -0.5 4,126,859 - +0.8 4,126,863 + +0.8 4,126,863 + +0.6 4,126,863 + +0.3 4,126,864 - +0.9 4,126,864 - +0.6 4,126,864 - -0.0 4,126,864 - -1.0 4,126,864 - -0.4 4,126,864 - +0.6
Or see this region's nucleotide sequence