Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_142

Experiment: Time16-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_141 and Pf1N1B4_142 are separated by 210 nucleotides Pf1N1B4_141 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 158,402 to 160,051 _141 Pf1N1B4_142 - TonB-dependent siderophore receptor precursor, at 160,262 to 162,742 _142 Position (kb) 160 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 159.384 kb on - strand, within Pf1N1B4_141at 159.569 kb on + strand, within Pf1N1B4_141at 159.570 kb on - strand, within Pf1N1B4_141at 159.668 kb on + strand, within Pf1N1B4_141at 159.669 kb on - strand, within Pf1N1B4_141at 159.669 kb on - strand, within Pf1N1B4_141at 159.669 kb on - strand, within Pf1N1B4_141at 159.671 kb on + strand, within Pf1N1B4_141at 159.672 kb on - strand, within Pf1N1B4_141at 159.729 kb on - strand, within Pf1N1B4_141at 160.068 kb on - strandat 160.145 kb on - strandat 160.145 kb on - strandat 160.145 kb on - strandat 160.145 kb on - strandat 160.239 kb on - strandat 160.382 kb on + strandat 160.382 kb on + strandat 160.382 kb on + strandat 160.382 kb on + strandat 160.478 kb on + strandat 160.478 kb on + strandat 160.479 kb on - strandat 160.479 kb on - strandat 160.479 kb on - strandat 160.479 kb on - strandat 160.851 kb on - strand, within Pf1N1B4_142at 160.874 kb on + strand, within Pf1N1B4_142at 160.874 kb on + strand, within Pf1N1B4_142at 160.949 kb on + strand, within Pf1N1B4_142at 160.949 kb on + strand, within Pf1N1B4_142at 160.950 kb on - strand, within Pf1N1B4_142at 160.989 kb on - strand, within Pf1N1B4_142at 160.989 kb on - strand, within Pf1N1B4_142at 160.989 kb on - strand, within Pf1N1B4_142at 161.219 kb on + strand, within Pf1N1B4_142at 161.220 kb on - strand, within Pf1N1B4_142at 161.225 kb on + strand, within Pf1N1B4_142at 161.255 kb on + strand, within Pf1N1B4_142at 161.256 kb on - strand, within Pf1N1B4_142at 161.288 kb on + strand, within Pf1N1B4_142at 161.289 kb on - strand, within Pf1N1B4_142at 161.315 kb on + strand, within Pf1N1B4_142at 161.315 kb on + strand, within Pf1N1B4_142at 161.315 kb on + strandat 161.444 kb on + strandat 161.445 kb on - strand, within Pf1N1B4_142at 161.532 kb on - strand, within Pf1N1B4_142at 161.637 kb on - strand, within Pf1N1B4_142at 161.637 kb on - strand, within Pf1N1B4_142at 161.637 kb on - strand, within Pf1N1B4_142at 161.723 kb on + strand, within Pf1N1B4_142at 161.862 kb on - strand, within Pf1N1B4_142at 161.905 kb on - strand, within Pf1N1B4_142at 161.928 kb on - strand, within Pf1N1B4_142at 161.928 kb on - strand, within Pf1N1B4_142at 162.098 kb on + strandat 162.147 kb on - strand, within Pf1N1B4_142at 162.147 kb on - strand, within Pf1N1B4_142at 162.359 kb on + strandat 162.359 kb on + strand, within Pf1N1B4_142at 162.360 kb on - strand, within Pf1N1B4_142at 162.360 kb on - strandat 162.414 kb on - strand, within Pf1N1B4_142at 162.414 kb on - strand, within Pf1N1B4_142at 162.414 kb on - strand, within Pf1N1B4_142at 162.414 kb on - strand, within Pf1N1B4_142at 162.422 kb on + strand, within Pf1N1B4_142at 162.422 kb on + strand, within Pf1N1B4_142at 162.423 kb on - strand, within Pf1N1B4_142at 162.423 kb on - strand, within Pf1N1B4_142at 162.423 kb on - strand, within Pf1N1B4_142at 162.423 kb on - strandat 162.569 kb on + strandat 162.656 kb on + strandat 162.656 kb on + strandat 162.659 kb on + strandat 162.659 kb on + strandat 162.660 kb on - strandat 162.696 kb on - strandat 162.934 kb on + strandat 163.032 kb on - strandat 163.032 kb on - strandat 163.137 kb on + strandat 163.138 kb on - strandat 163.144 kb on + strandat 163.144 kb on + strandat 163.144 kb on + strandat 163.144 kb on + strandat 163.243 kb on + strandat 163.366 kb on + strandat 163.366 kb on + strandat 163.414 kb on + strandat 163.414 kb on + strandat 163.414 kb on + strandat 163.415 kb on - strandat 163.415 kb on - strandat 163.496 kb on + strandat 163.503 kb on + strandat 163.503 kb on + strandat 163.504 kb on - strandat 163.504 kb on - strandat 163.591 kb on + strandat 163.652 kb on + strandat 163.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time16-nophage
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159,384 - Pf1N1B4_141 0.60 -0.3
159,569 + Pf1N1B4_141 0.71 +1.2
159,570 - Pf1N1B4_141 0.71 -1.0
159,668 + Pf1N1B4_141 0.77 -1.2
159,669 - Pf1N1B4_141 0.77 -1.1
159,669 - Pf1N1B4_141 0.77 -0.2
159,669 - Pf1N1B4_141 0.77 -1.4
159,671 + Pf1N1B4_141 0.77 -2.0
159,672 - Pf1N1B4_141 0.77 -1.6
159,729 - Pf1N1B4_141 0.80 -1.3
160,068 - +0.2
160,145 - -0.1
160,145 - -0.4
160,145 - +0.6
160,145 - -0.8
160,239 - +0.6
160,382 + +0.8
160,382 + -0.8
160,382 + +0.5
160,382 + -2.1
160,478 + -0.2
160,478 + -0.2
160,479 - +1.2
160,479 - -0.4
160,479 - -0.4
160,479 - -0.7
160,851 - Pf1N1B4_142 0.24 +0.2
160,874 + Pf1N1B4_142 0.25 -0.7
160,874 + Pf1N1B4_142 0.25 +0.0
160,949 + Pf1N1B4_142 0.28 -0.3
160,949 + Pf1N1B4_142 0.28 -0.8
160,950 - Pf1N1B4_142 0.28 -1.0
160,989 - Pf1N1B4_142 0.29 -2.3
160,989 - Pf1N1B4_142 0.29 +0.2
160,989 - Pf1N1B4_142 0.29 +0.4
161,219 + Pf1N1B4_142 0.39 -1.0
161,220 - Pf1N1B4_142 0.39 -0.0
161,225 + Pf1N1B4_142 0.39 +0.8
161,255 + Pf1N1B4_142 0.40 +0.8
161,256 - Pf1N1B4_142 0.40 +0.2
161,288 + Pf1N1B4_142 0.41 -1.6
161,289 - Pf1N1B4_142 0.41 +0.6
161,315 + Pf1N1B4_142 0.42 -0.3
161,315 + Pf1N1B4_142 0.42 +0.8
161,315 + -1.1
161,444 + -1.4
161,445 - Pf1N1B4_142 0.48 -0.1
161,532 - Pf1N1B4_142 0.51 -0.4
161,637 - Pf1N1B4_142 0.55 +1.2
161,637 - Pf1N1B4_142 0.55 +0.5
161,637 - Pf1N1B4_142 0.55 -2.8
161,723 + Pf1N1B4_142 0.59 -2.0
161,862 - Pf1N1B4_142 0.64 -0.2
161,905 - Pf1N1B4_142 0.66 +0.4
161,928 - Pf1N1B4_142 0.67 +1.0
161,928 - Pf1N1B4_142 0.67 +0.3
162,098 + +1.8
162,147 - Pf1N1B4_142 0.76 +0.2
162,147 - Pf1N1B4_142 0.76 -0.1
162,359 + +0.2
162,359 + Pf1N1B4_142 0.85 -0.1
162,360 - Pf1N1B4_142 0.85 +0.9
162,360 - -1.6
162,414 - Pf1N1B4_142 0.87 -0.7
162,414 - Pf1N1B4_142 0.87 -0.1
162,414 - Pf1N1B4_142 0.87 -1.2
162,414 - Pf1N1B4_142 0.87 -0.4
162,422 + Pf1N1B4_142 0.87 -0.3
162,422 + Pf1N1B4_142 0.87 +0.2
162,423 - Pf1N1B4_142 0.87 +0.1
162,423 - Pf1N1B4_142 0.87 -0.1
162,423 - Pf1N1B4_142 0.87 +0.8
162,423 - -1.1
162,569 + +0.8
162,656 + +0.4
162,656 + -1.4
162,659 + -1.0
162,659 + +0.2
162,660 - -0.5
162,696 - -1.1
162,934 + -1.3
163,032 - +0.1
163,032 - +0.5
163,137 + +1.2
163,138 - +0.0
163,144 + -0.5
163,144 + -1.0
163,144 + -0.5
163,144 + +1.5
163,243 + -0.0
163,366 + +1.6
163,366 + +0.1
163,414 + -0.4
163,414 + -0.7
163,414 + -0.5
163,415 - -0.8
163,415 - -1.5
163,496 + -0.8
163,503 + -0.5
163,503 + +0.2
163,504 - -0.0
163,504 - -1.0
163,591 + -0.0
163,652 + +0.5
163,653 - -0.4

Or see this region's nucleotide sequence