Experiment: Time6-FRS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5995 and Pf1N1B4_5996 are separated by 91 nucleotides Pf1N1B4_5996 and Pf1N1B4_5997 are separated by 87 nucleotides Pf1N1B4_5997 and Pf1N1B4_5998 are separated by 14 nucleotides
Pf1N1B4_5995 - Transporter, MFS superfamily, at 445,703 to 447,034
_5995
Pf1N1B4_5996 - Transposase, at 447,126 to 448,178
_5996
Pf1N1B4_5997 - Taurine dioxygenase (EC 1.14.11.17), at 448,266 to 449,114
_5997
Pf1N1B4_5998 - Quinone oxidoreductase (EC 1.6.5.5), at 449,129 to 450,109
_5998
Position (kb) 447
448
449 Strain fitness (log2 ratio) -1
0
1
2 at 446.247 kb on + strand, within Pf1N1B4_5995 at 446.263 kb on - strand, within Pf1N1B4_5995 at 446.323 kb on - strand, within Pf1N1B4_5995 at 446.357 kb on - strand, within Pf1N1B4_5995 at 446.544 kb on - strand, within Pf1N1B4_5995 at 446.698 kb on - strand, within Pf1N1B4_5995 at 446.922 kb on + strand at 446.922 kb on + strand at 446.923 kb on - strand at 446.971 kb on - strand at 447.058 kb on + strand at 447.058 kb on + strand at 447.059 kb on - strand at 447.059 kb on - strand at 447.059 kb on - strand at 447.230 kb on - strand at 447.230 kb on - strand at 447.344 kb on + strand, within Pf1N1B4_5996 at 447.345 kb on - strand, within Pf1N1B4_5996 at 447.345 kb on - strand, within Pf1N1B4_5996 at 447.375 kb on - strand, within Pf1N1B4_5996 at 447.544 kb on + strand, within Pf1N1B4_5996 at 447.544 kb on + strand, within Pf1N1B4_5996 at 447.544 kb on + strand, within Pf1N1B4_5996 at 447.545 kb on - strand, within Pf1N1B4_5996 at 447.545 kb on - strand, within Pf1N1B4_5996 at 448.027 kb on + strand, within Pf1N1B4_5996 at 448.111 kb on + strand at 448.184 kb on - strand at 448.189 kb on + strand at 448.189 kb on + strand at 448.189 kb on + strand at 448.189 kb on + strand at 448.190 kb on - strand at 448.195 kb on + strand at 448.195 kb on + strand at 448.270 kb on + strand at 448.350 kb on - strand at 448.406 kb on - strand, within Pf1N1B4_5997 at 448.417 kb on + strand, within Pf1N1B4_5997 at 448.418 kb on - strand, within Pf1N1B4_5997 at 448.418 kb on - strand, within Pf1N1B4_5997 at 448.501 kb on + strand, within Pf1N1B4_5997 at 448.501 kb on + strand, within Pf1N1B4_5997 at 448.502 kb on - strand at 448.594 kb on + strand, within Pf1N1B4_5997 at 448.868 kb on - strand, within Pf1N1B4_5997 at 449.130 kb on + strand at 449.131 kb on - strand at 449.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time6-FRS remove 446,247 + Pf1N1B4_5995 0.41 +0.7 446,263 - Pf1N1B4_5995 0.42 +1.8 446,323 - Pf1N1B4_5995 0.47 +1.4 446,357 - Pf1N1B4_5995 0.49 +1.4 446,544 - Pf1N1B4_5995 0.63 -0.6 446,698 - Pf1N1B4_5995 0.75 +0.2 446,922 + -0.0 446,922 + +1.4 446,923 - -1.2 446,971 - +0.8 447,058 + -0.6 447,058 + -0.8 447,059 - +0.9 447,059 - +0.2 447,059 - +0.1 447,230 - +0.6 447,230 - -0.2 447,344 + Pf1N1B4_5996 0.21 +0.6 447,345 - Pf1N1B4_5996 0.21 -0.1 447,345 - Pf1N1B4_5996 0.21 -0.7 447,375 - Pf1N1B4_5996 0.24 -1.3 447,544 + Pf1N1B4_5996 0.40 -0.2 447,544 + Pf1N1B4_5996 0.40 +0.6 447,544 + Pf1N1B4_5996 0.40 +0.1 447,545 - Pf1N1B4_5996 0.40 -0.4 447,545 - Pf1N1B4_5996 0.40 +0.0 448,027 + Pf1N1B4_5996 0.86 -1.0 448,111 + -1.0 448,184 - -0.6 448,189 + +0.8 448,189 + -0.2 448,189 + -0.4 448,189 + +0.4 448,190 - +1.4 448,195 + +0.6 448,195 + +1.4 448,270 + -0.8 448,350 - +0.4 448,406 - Pf1N1B4_5997 0.16 +0.2 448,417 + Pf1N1B4_5997 0.18 -1.2 448,418 - Pf1N1B4_5997 0.18 -0.2 448,418 - Pf1N1B4_5997 0.18 +1.9 448,501 + Pf1N1B4_5997 0.28 -0.7 448,501 + Pf1N1B4_5997 0.28 -0.5 448,502 - -1.2 448,594 + Pf1N1B4_5997 0.39 -1.4 448,868 - Pf1N1B4_5997 0.71 -0.6 449,130 + +0.4 449,131 - -1.1 449,131 - +0.8
Or see this region's nucleotide sequence