Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5657

Experiment: Time6-FRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5655 and Pf1N1B4_5656 are separated by 11 nucleotidesPf1N1B4_5656 and Pf1N1B4_5657 overlap by 4 nucleotidesPf1N1B4_5657 and Pf1N1B4_5658 are separated by 82 nucleotides Pf1N1B4_5655 - FIG00955561: hypothetical protein, at 87,457 to 87,663 _5655 Pf1N1B4_5656 - Predicted cobalt transporter CbtA, at 87,675 to 88,382 _5656 Pf1N1B4_5657 - Cobalt-precorrin-3b C17-methyltransferase, at 88,379 to 88,792 _5657 Pf1N1B4_5658 - Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133), at 88,875 to 89,621 _5658 Position (kb) 88 89Strain fitness (log2 ratio) -2 -1 0 1at 87.581 kb on - strandat 87.787 kb on - strand, within Pf1N1B4_5656at 87.986 kb on + strandat 87.986 kb on + strand, within Pf1N1B4_5656at 88.372 kb on - strandat 88.884 kb on + strandat 88.885 kb on - strandat 88.968 kb on + strand, within Pf1N1B4_5658at 88.968 kb on + strand, within Pf1N1B4_5658at 88.968 kb on + strand, within Pf1N1B4_5658at 88.968 kb on + strand, within Pf1N1B4_5658at 88.968 kb on + strand, within Pf1N1B4_5658at 88.969 kb on - strandat 88.969 kb on - strand, within Pf1N1B4_5658at 88.969 kb on - strand, within Pf1N1B4_5658at 88.969 kb on - strand, within Pf1N1B4_5658at 88.969 kb on - strand, within Pf1N1B4_5658at 88.997 kb on - strand, within Pf1N1B4_5658at 89.131 kb on - strand, within Pf1N1B4_5658at 89.586 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-FRS
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87,581 - +0.2
87,787 - Pf1N1B4_5656 0.16 -2.0
87,986 + +0.6
87,986 + Pf1N1B4_5656 0.44 -0.6
88,372 - -0.9
88,884 + -0.1
88,885 - -1.0
88,968 + Pf1N1B4_5658 0.12 +0.4
88,968 + Pf1N1B4_5658 0.12 +0.8
88,968 + Pf1N1B4_5658 0.12 +0.6
88,968 + Pf1N1B4_5658 0.12 +0.7
88,968 + Pf1N1B4_5658 0.12 +0.2
88,969 - -1.4
88,969 - Pf1N1B4_5658 0.13 -2.0
88,969 - Pf1N1B4_5658 0.13 +1.2
88,969 - Pf1N1B4_5658 0.13 -0.2
88,969 - Pf1N1B4_5658 0.13 +0.6
88,997 - Pf1N1B4_5658 0.16 +1.1
89,131 - Pf1N1B4_5658 0.34 +0.4
89,586 + +0.1

Or see this region's nucleotide sequence