Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5654

Experiment: Time6-FRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5653 and Pf1N1B4_5654 are separated by 3 nucleotidesPf1N1B4_5654 and Pf1N1B4_5655 are separated by 927 nucleotides Pf1N1B4_5653 - CobN component of cobalt chelatase involved in B12 biosynthesis, at 81,598 to 85,464 _5653 Pf1N1B4_5654 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 85,468 to 86,529 _5654 Pf1N1B4_5655 - FIG00955561: hypothetical protein, at 87,457 to 87,663 _5655 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 84.972 kb on - strand, within Pf1N1B4_5653at 85.253 kb on + strandat 85.254 kb on - strandat 86.802 kb on + strandat 86.802 kb on + strandat 86.802 kb on + strandat 86.803 kb on - strandat 86.803 kb on - strandat 86.844 kb on - strandat 87.110 kb on + strandat 87.111 kb on - strandat 87.111 kb on - strandat 87.111 kb on - strandat 87.178 kb on - strandat 87.249 kb on + strandat 87.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-FRS
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84,972 - Pf1N1B4_5653 0.87 -0.4
85,253 + +1.2
85,254 - -1.8
86,802 + +0.2
86,802 + -0.8
86,802 + -1.1
86,803 - +0.5
86,803 - -0.4
86,844 - -0.2
87,110 + +0.5
87,111 - +0.2
87,111 - -0.4
87,111 - -0.4
87,178 - +0.2
87,249 + +1.7
87,250 - +1.1

Or see this region's nucleotide sequence