Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1849

Experiment: Time6-FRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1848 and Pf1N1B4_1849 are separated by 244 nucleotidesPf1N1B4_1849 and Pf1N1B4_1850 are separated by 84 nucleotides Pf1N1B4_1848 - Radical SAM domain protein, at 2,120,038 to 2,121,096 _1848 Pf1N1B4_1849 - Carbonic anhydrase (EC 4.2.1.1), at 2,121,341 to 2,122,072 _1849 Pf1N1B4_1850 - Sulfate transporter family protein in cluster with carbonic anhydrase, at 2,122,157 to 2,123,683 _1850 Position (kb) 2121 2122 2123Strain fitness (log2 ratio) -2 -1 0 1at 2120.437 kb on + strand, within Pf1N1B4_1848at 2120.472 kb on + strand, within Pf1N1B4_1848at 2120.472 kb on + strand, within Pf1N1B4_1848at 2120.472 kb on + strand, within Pf1N1B4_1848at 2120.524 kb on - strand, within Pf1N1B4_1848at 2120.524 kb on - strand, within Pf1N1B4_1848at 2120.591 kb on + strand, within Pf1N1B4_1848at 2120.632 kb on - strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.806 kb on + strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.807 kb on - strand, within Pf1N1B4_1848at 2120.929 kb on + strand, within Pf1N1B4_1848at 2120.929 kb on + strand, within Pf1N1B4_1848at 2120.929 kb on + strand, within Pf1N1B4_1848at 2120.930 kb on - strand, within Pf1N1B4_1848at 2120.930 kb on - strand, within Pf1N1B4_1848at 2121.094 kb on + strandat 2121.094 kb on + strandat 2121.095 kb on - strandat 2121.110 kb on + strandat 2121.120 kb on + strandat 2121.163 kb on + strandat 2121.172 kb on + strandat 2121.181 kb on + strandat 2121.181 kb on + strandat 2121.181 kb on + strandat 2121.181 kb on + strandat 2121.192 kb on + strandat 2121.206 kb on + strandat 2121.207 kb on - strandat 2121.207 kb on - strandat 2121.221 kb on - strandat 2121.274 kb on + strandat 2121.274 kb on + strandat 2121.424 kb on + strand, within Pf1N1B4_1849at 2121.424 kb on + strand, within Pf1N1B4_1849at 2121.623 kb on + strand, within Pf1N1B4_1849at 2121.662 kb on + strand, within Pf1N1B4_1849at 2121.685 kb on - strand, within Pf1N1B4_1849at 2121.962 kb on + strand, within Pf1N1B4_1849at 2121.962 kb on + strand, within Pf1N1B4_1849at 2121.963 kb on - strand, within Pf1N1B4_1849at 2121.992 kb on + strand, within Pf1N1B4_1849at 2121.992 kb on + strand, within Pf1N1B4_1849at 2121.992 kb on + strand, within Pf1N1B4_1849at 2121.992 kb on + strand, within Pf1N1B4_1849at 2121.992 kb on + strand, within Pf1N1B4_1849at 2121.992 kb on + strand, within Pf1N1B4_1849at 2121.992 kb on + strand, within Pf1N1B4_1849at 2121.993 kb on - strand, within Pf1N1B4_1849at 2121.993 kb on - strand, within Pf1N1B4_1849at 2122.070 kb on + strandat 2122.070 kb on + strandat 2122.070 kb on + strandat 2122.070 kb on + strandat 2122.070 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.080 kb on + strandat 2122.081 kb on - strandat 2122.081 kb on - strandat 2122.081 kb on - strandat 2122.081 kb on - strandat 2122.081 kb on - strandat 2122.081 kb on - strandat 2122.084 kb on + strandat 2122.084 kb on + strandat 2122.084 kb on + strandat 2122.084 kb on + strandat 2122.084 kb on + strandat 2122.084 kb on + strandat 2122.084 kb on + strandat 2122.084 kb on + strandat 2122.085 kb on - strandat 2122.085 kb on - strandat 2122.173 kb on + strandat 2122.174 kb on - strandat 2122.174 kb on - strandat 2122.174 kb on - strandat 2122.174 kb on - strandat 2122.374 kb on + strand, within Pf1N1B4_1850at 2122.375 kb on - strand, within Pf1N1B4_1850at 2122.375 kb on - strand, within Pf1N1B4_1850at 2122.509 kb on - strand, within Pf1N1B4_1850at 2122.743 kb on + strand, within Pf1N1B4_1850at 2122.744 kb on - strand, within Pf1N1B4_1850at 2122.842 kb on + strand, within Pf1N1B4_1850at 2122.954 kb on + strand, within Pf1N1B4_1850at 2122.954 kb on + strand, within Pf1N1B4_1850at 2123.007 kb on + strand, within Pf1N1B4_1850at 2123.007 kb on + strand, within Pf1N1B4_1850at 2123.007 kb on + strand, within Pf1N1B4_1850at 2123.007 kb on + strand, within Pf1N1B4_1850at 2123.007 kb on + strand, within Pf1N1B4_1850at 2123.007 kb on + strand, within Pf1N1B4_1850at 2123.007 kb on + strand, within Pf1N1B4_1850at 2123.008 kb on - strand, within Pf1N1B4_1850at 2123.008 kb on - strand, within Pf1N1B4_1850at 2123.008 kb on - strand, within Pf1N1B4_1850at 2123.008 kb on - strand, within Pf1N1B4_1850at 2123.008 kb on - strand, within Pf1N1B4_1850at 2123.008 kb on - strand, within Pf1N1B4_1850at 2123.008 kb on - strand, within Pf1N1B4_1850at 2123.011 kb on + strand, within Pf1N1B4_1850at 2123.011 kb on + strand, within Pf1N1B4_1850at 2123.011 kb on + strand, within Pf1N1B4_1850at 2123.011 kb on + strand, within Pf1N1B4_1850at 2123.011 kb on + strand, within Pf1N1B4_1850at 2123.011 kb on + strand, within Pf1N1B4_1850at 2123.011 kb on + strand, within Pf1N1B4_1850at 2123.012 kb on - strand, within Pf1N1B4_1850at 2123.012 kb on - strand, within Pf1N1B4_1850at 2123.012 kb on - strand, within Pf1N1B4_1850at 2123.012 kb on - strand, within Pf1N1B4_1850at 2123.012 kb on - strand, within Pf1N1B4_1850

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-FRS
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2,120,437 + Pf1N1B4_1848 0.38 -1.6
2,120,472 + Pf1N1B4_1848 0.41 +1.1
2,120,472 + Pf1N1B4_1848 0.41 +0.3
2,120,472 + Pf1N1B4_1848 0.41 +1.3
2,120,524 - Pf1N1B4_1848 0.46 +1.3
2,120,524 - Pf1N1B4_1848 0.46 -1.9
2,120,591 + Pf1N1B4_1848 0.52 -1.1
2,120,632 - Pf1N1B4_1848 0.56 +0.3
2,120,806 + Pf1N1B4_1848 0.73 -0.6
2,120,806 + Pf1N1B4_1848 0.73 -0.9
2,120,806 + Pf1N1B4_1848 0.73 -1.0
2,120,806 + Pf1N1B4_1848 0.73 -0.2
2,120,806 + Pf1N1B4_1848 0.73 -0.5
2,120,806 + Pf1N1B4_1848 0.73 -0.8
2,120,806 + Pf1N1B4_1848 0.73 -0.3
2,120,806 + Pf1N1B4_1848 0.73 -1.7
2,120,806 + Pf1N1B4_1848 0.73 -1.0
2,120,806 + Pf1N1B4_1848 0.73 -0.3
2,120,806 + Pf1N1B4_1848 0.73 +0.6
2,120,807 - Pf1N1B4_1848 0.73 -1.7
2,120,807 - Pf1N1B4_1848 0.73 +0.4
2,120,807 - Pf1N1B4_1848 0.73 -1.1
2,120,807 - Pf1N1B4_1848 0.73 +0.5
2,120,807 - Pf1N1B4_1848 0.73 +0.7
2,120,807 - Pf1N1B4_1848 0.73 -0.3
2,120,807 - Pf1N1B4_1848 0.73 -0.0
2,120,807 - Pf1N1B4_1848 0.73 -0.9
2,120,929 + Pf1N1B4_1848 0.84 -0.4
2,120,929 + Pf1N1B4_1848 0.84 -0.7
2,120,929 + Pf1N1B4_1848 0.84 +0.3
2,120,930 - Pf1N1B4_1848 0.84 -0.6
2,120,930 - Pf1N1B4_1848 0.84 +0.1
2,121,094 + +1.5
2,121,094 + +0.0
2,121,095 - +0.0
2,121,110 + +0.7
2,121,120 + -0.1
2,121,163 + +0.0
2,121,172 + -0.9
2,121,181 + +0.5
2,121,181 + -0.4
2,121,181 + -0.3
2,121,181 + +1.0
2,121,192 + -0.0
2,121,206 + -0.2
2,121,207 - -0.6
2,121,207 - +0.3
2,121,221 - -0.1
2,121,274 + -0.7
2,121,274 + -1.1
2,121,424 + Pf1N1B4_1849 0.11 +0.1
2,121,424 + Pf1N1B4_1849 0.11 -0.7
2,121,623 + Pf1N1B4_1849 0.39 +0.8
2,121,662 + Pf1N1B4_1849 0.44 -0.5
2,121,685 - Pf1N1B4_1849 0.47 +0.6
2,121,962 + Pf1N1B4_1849 0.85 -0.1
2,121,962 + Pf1N1B4_1849 0.85 +0.9
2,121,963 - Pf1N1B4_1849 0.85 -1.1
2,121,992 + Pf1N1B4_1849 0.89 -0.7
2,121,992 + Pf1N1B4_1849 0.89 +1.3
2,121,992 + Pf1N1B4_1849 0.89 -0.1
2,121,992 + Pf1N1B4_1849 0.89 +0.8
2,121,992 + Pf1N1B4_1849 0.89 -1.2
2,121,992 + Pf1N1B4_1849 0.89 -0.6
2,121,992 + Pf1N1B4_1849 0.89 +0.3
2,121,993 - Pf1N1B4_1849 0.89 -0.7
2,121,993 - Pf1N1B4_1849 0.89 +0.3
2,122,070 + -1.6
2,122,070 + -0.2
2,122,070 + +0.3
2,122,070 + -0.9
2,122,070 + +0.3
2,122,080 + -0.4
2,122,080 + -1.7
2,122,080 + -1.9
2,122,080 + -0.1
2,122,080 + -0.2
2,122,080 + -0.8
2,122,080 + -0.4
2,122,080 + +1.0
2,122,080 + -0.7
2,122,080 + -1.6
2,122,080 + -0.3
2,122,080 + -0.7
2,122,080 + +1.0
2,122,080 + +0.1
2,122,080 + +0.1
2,122,080 + -0.2
2,122,080 + +0.2
2,122,080 + -0.3
2,122,080 + -0.8
2,122,081 - +0.8
2,122,081 - +0.7
2,122,081 - -0.9
2,122,081 - +0.3
2,122,081 - -0.3
2,122,081 - -0.3
2,122,084 + -0.7
2,122,084 + -0.2
2,122,084 + +0.3
2,122,084 + -1.7
2,122,084 + +0.1
2,122,084 + +0.3
2,122,084 + +0.1
2,122,084 + -0.7
2,122,085 - +0.7
2,122,085 - -0.3
2,122,173 + +1.0
2,122,174 - -0.3
2,122,174 - -0.3
2,122,174 - +0.9
2,122,174 - +0.6
2,122,374 + Pf1N1B4_1850 0.14 -0.7
2,122,375 - Pf1N1B4_1850 0.14 +0.5
2,122,375 - Pf1N1B4_1850 0.14 +0.3
2,122,509 - Pf1N1B4_1850 0.23 +1.3
2,122,743 + Pf1N1B4_1850 0.38 -0.2
2,122,744 - Pf1N1B4_1850 0.38 +1.3
2,122,842 + Pf1N1B4_1850 0.45 +1.0
2,122,954 + Pf1N1B4_1850 0.52 -0.7
2,122,954 + Pf1N1B4_1850 0.52 +0.9
2,123,007 + Pf1N1B4_1850 0.56 -0.7
2,123,007 + Pf1N1B4_1850 0.56 +0.5
2,123,007 + Pf1N1B4_1850 0.56 +0.4
2,123,007 + Pf1N1B4_1850 0.56 -0.3
2,123,007 + Pf1N1B4_1850 0.56 +0.4
2,123,007 + Pf1N1B4_1850 0.56 -0.6
2,123,007 + Pf1N1B4_1850 0.56 -1.0
2,123,008 - Pf1N1B4_1850 0.56 +0.1
2,123,008 - Pf1N1B4_1850 0.56 +0.6
2,123,008 - Pf1N1B4_1850 0.56 +0.3
2,123,008 - Pf1N1B4_1850 0.56 +1.3
2,123,008 - Pf1N1B4_1850 0.56 -0.6
2,123,008 - Pf1N1B4_1850 0.56 -0.7
2,123,008 - Pf1N1B4_1850 0.56 +0.4
2,123,011 + Pf1N1B4_1850 0.56 -1.2
2,123,011 + Pf1N1B4_1850 0.56 +0.8
2,123,011 + Pf1N1B4_1850 0.56 +0.4
2,123,011 + Pf1N1B4_1850 0.56 +0.0
2,123,011 + Pf1N1B4_1850 0.56 -0.2
2,123,011 + Pf1N1B4_1850 0.56 +1.3
2,123,011 + Pf1N1B4_1850 0.56 -0.7
2,123,012 - Pf1N1B4_1850 0.56 -0.3
2,123,012 - Pf1N1B4_1850 0.56 +1.0
2,123,012 - Pf1N1B4_1850 0.56 -1.6
2,123,012 - Pf1N1B4_1850 0.56 -0.1
2,123,012 - Pf1N1B4_1850 0.56 +0.1

Or see this region's nucleotide sequence