Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_809

Experiment: Time16-FRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_807 and Pf1N1B4_808 are separated by 4 nucleotidesPf1N1B4_808 and Pf1N1B4_809 are separated by 568 nucleotidesPf1N1B4_809 and Pf1N1B4_810 are separated by 47 nucleotidesPf1N1B4_810 and Pf1N1B4_811 overlap by 1 nucleotides Pf1N1B4_807 - hypothetical protein, at 924,694 to 925,332 _807 Pf1N1B4_808 - hypothetical protein, at 925,337 to 925,477 _808 Pf1N1B4_809 - Adhesin major subunit pilin, at 926,046 to 926,540 _809 Pf1N1B4_810 - FIG00958314: hypothetical protein, at 926,588 to 927,388 _810 Pf1N1B4_811 - hypothetical protein, at 927,388 to 928,623 _811 Position (kb) 926 927Strain fitness (log2 ratio) -2 -1 0 1 2at 925.128 kb on + strandat 925.129 kb on - strand, within Pf1N1B4_807at 925.129 kb on - strand, within Pf1N1B4_807at 925.129 kb on - strand, within Pf1N1B4_807at 925.147 kb on - strand, within Pf1N1B4_807at 925.161 kb on + strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.256 kb on + strand, within Pf1N1B4_807at 925.256 kb on + strand, within Pf1N1B4_807at 925.273 kb on - strandat 925.319 kb on + strandat 925.341 kb on - strandat 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strandat 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.573 kb on + strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.574 kb on - strandat 925.577 kb on + strandat 925.590 kb on + strandat 925.600 kb on - strandat 925.883 kb on - strandat 925.883 kb on - strandat 925.883 kb on - strandat 925.927 kb on + strandat 926.089 kb on + strandat 926.090 kb on - strandat 926.090 kb on - strandat 926.090 kb on - strandat 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.102 kb on + strand, within Pf1N1B4_809at 926.103 kb on - strand, within Pf1N1B4_809at 926.104 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.236 kb on + strand, within Pf1N1B4_809at 926.237 kb on - strand, within Pf1N1B4_809at 926.237 kb on - strand, within Pf1N1B4_809at 926.237 kb on - strandat 926.237 kb on - strand, within Pf1N1B4_809at 926.267 kb on + strand, within Pf1N1B4_809at 926.267 kb on + strand, within Pf1N1B4_809at 926.268 kb on - strand, within Pf1N1B4_809at 926.268 kb on - strand, within Pf1N1B4_809at 926.269 kb on + strand, within Pf1N1B4_809at 926.269 kb on + strand, within Pf1N1B4_809at 926.270 kb on - strand, within Pf1N1B4_809at 926.270 kb on - strand, within Pf1N1B4_809at 926.270 kb on - strand, within Pf1N1B4_809at 926.326 kb on + strandat 926.326 kb on + strand, within Pf1N1B4_809at 926.326 kb on + strand, within Pf1N1B4_809at 926.326 kb on + strand, within Pf1N1B4_809at 926.327 kb on - strand, within Pf1N1B4_809at 926.354 kb on + strand, within Pf1N1B4_809at 926.354 kb on + strand, within Pf1N1B4_809at 926.355 kb on - strand, within Pf1N1B4_809at 926.416 kb on + strand, within Pf1N1B4_809at 926.416 kb on + strand, within Pf1N1B4_809at 926.647 kb on - strandat 926.666 kb on - strandat 926.768 kb on + strand, within Pf1N1B4_810at 926.768 kb on + strand, within Pf1N1B4_810at 926.769 kb on - strand, within Pf1N1B4_810at 926.773 kb on + strand, within Pf1N1B4_810at 926.773 kb on + strand, within Pf1N1B4_810at 926.774 kb on - strand, within Pf1N1B4_810at 926.774 kb on - strand, within Pf1N1B4_810at 926.796 kb on + strand, within Pf1N1B4_810at 926.796 kb on + strand, within Pf1N1B4_810at 926.796 kb on + strand, within Pf1N1B4_810at 926.796 kb on + strand, within Pf1N1B4_810at 926.797 kb on - strand, within Pf1N1B4_810at 926.797 kb on - strand, within Pf1N1B4_810at 926.797 kb on - strand, within Pf1N1B4_810at 926.797 kb on - strand, within Pf1N1B4_810at 926.797 kb on - strand, within Pf1N1B4_810at 926.797 kb on - strand, within Pf1N1B4_810at 926.858 kb on + strand, within Pf1N1B4_810at 926.859 kb on - strand, within Pf1N1B4_810at 926.910 kb on + strand, within Pf1N1B4_810at 926.910 kb on + strand, within Pf1N1B4_810at 926.911 kb on - strand, within Pf1N1B4_810at 927.015 kb on + strand, within Pf1N1B4_810at 927.016 kb on - strand, within Pf1N1B4_810at 927.016 kb on - strand, within Pf1N1B4_810at 927.016 kb on - strand, within Pf1N1B4_810at 927.016 kb on - strand, within Pf1N1B4_810at 927.147 kb on + strand, within Pf1N1B4_810at 927.147 kb on + strand, within Pf1N1B4_810at 927.147 kb on + strand, within Pf1N1B4_810at 927.147 kb on + strand, within Pf1N1B4_810at 927.148 kb on - strand, within Pf1N1B4_810at 927.148 kb on - strand, within Pf1N1B4_810at 927.148 kb on - strand, within Pf1N1B4_810at 927.216 kb on + strand, within Pf1N1B4_810at 927.216 kb on + strand, within Pf1N1B4_810at 927.216 kb on + strand, within Pf1N1B4_810at 927.216 kb on + strand, within Pf1N1B4_810at 927.220 kb on + strand, within Pf1N1B4_810at 927.220 kb on + strand, within Pf1N1B4_810at 927.221 kb on - strand, within Pf1N1B4_810at 927.240 kb on + strand, within Pf1N1B4_810at 927.240 kb on + strand, within Pf1N1B4_810at 927.304 kb on + strand, within Pf1N1B4_810at 927.304 kb on + strand, within Pf1N1B4_810at 927.304 kb on + strand, within Pf1N1B4_810at 927.308 kb on + strand, within Pf1N1B4_810at 927.308 kb on + strand, within Pf1N1B4_810at 927.308 kb on + strand, within Pf1N1B4_810at 927.308 kb on + strand, within Pf1N1B4_810at 927.309 kb on - strandat 927.331 kb on + strandat 927.332 kb on - strandat 927.515 kb on + strand, within Pf1N1B4_811at 927.515 kb on + strand, within Pf1N1B4_811at 927.515 kb on + strand, within Pf1N1B4_811at 927.515 kb on + strand, within Pf1N1B4_811

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Per-strain Table

Position Strand Gene LocusTag Fraction Time16-FRS
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925,128 + -0.2
925,129 - Pf1N1B4_807 0.68 -0.2
925,129 - Pf1N1B4_807 0.68 -1.6
925,129 - Pf1N1B4_807 0.68 -0.0
925,147 - Pf1N1B4_807 0.71 +0.2
925,161 + Pf1N1B4_807 0.73 -0.6
925,162 - Pf1N1B4_807 0.73 +1.2
925,162 - Pf1N1B4_807 0.73 +0.3
925,162 - Pf1N1B4_807 0.73 -1.2
925,162 - Pf1N1B4_807 0.73 +0.4
925,256 + Pf1N1B4_807 0.88 +1.1
925,256 + Pf1N1B4_807 0.88 -1.1
925,273 - +0.6
925,319 + +1.2
925,341 - -0.0
925,433 + Pf1N1B4_808 0.68 -1.0
925,433 + Pf1N1B4_808 0.68 +1.1
925,433 + Pf1N1B4_808 0.68 +0.2
925,433 + Pf1N1B4_808 0.68 +1.0
925,433 + Pf1N1B4_808 0.68 -0.2
925,433 + Pf1N1B4_808 0.68 +0.1
925,433 + Pf1N1B4_808 0.68 -2.0
925,433 + Pf1N1B4_808 0.68 +0.1
925,433 + Pf1N1B4_808 0.68 -0.1
925,433 + Pf1N1B4_808 0.68 -0.6
925,433 + Pf1N1B4_808 0.68 +0.6
925,433 + +1.4
925,434 - Pf1N1B4_808 0.69 +0.2
925,434 - Pf1N1B4_808 0.69 +0.7
925,434 - Pf1N1B4_808 0.69 +2.1
925,434 - Pf1N1B4_808 0.69 -2.0
925,434 - Pf1N1B4_808 0.69 +0.9
925,573 + +0.9
925,573 + -0.1
925,573 + -0.6
925,573 + +0.4
925,573 + +0.1
925,573 + +0.2
925,573 + -1.0
925,573 + +0.1
925,573 + -1.0
925,573 + -0.6
925,573 + +0.0
925,573 + -1.0
925,573 + +0.4
925,573 + -0.8
925,574 - -0.5
925,574 - +1.4
925,574 - -2.1
925,574 - +0.9
925,574 - -1.8
925,574 - -2.0
925,574 - +1.0
925,574 - -1.3
925,574 - -0.8
925,574 - -0.6
925,577 + -0.6
925,590 + -0.5
925,600 - -0.1
925,883 - +0.7
925,883 - -1.1
925,883 - -1.1
925,927 + -0.6
926,089 + -0.5
926,090 - -1.5
926,090 - -0.2
926,090 - -1.2
926,102 + Pf1N1B4_809 0.11 +0.4
926,102 + Pf1N1B4_809 0.11 +0.0
926,102 + Pf1N1B4_809 0.11 -2.0
926,102 + Pf1N1B4_809 0.11 +0.5
926,102 + Pf1N1B4_809 0.11 -0.9
926,102 + Pf1N1B4_809 0.11 -0.5
926,102 + Pf1N1B4_809 0.11 -0.0
926,103 - Pf1N1B4_809 0.12 -1.2
926,104 + Pf1N1B4_809 0.12 +0.5
926,236 + Pf1N1B4_809 0.38 -0.0
926,236 + Pf1N1B4_809 0.38 -1.0
926,236 + Pf1N1B4_809 0.38 +0.1
926,236 + Pf1N1B4_809 0.38 -0.4
926,236 + Pf1N1B4_809 0.38 -1.0
926,236 + Pf1N1B4_809 0.38 -1.0
926,236 + Pf1N1B4_809 0.38 -0.6
926,236 + Pf1N1B4_809 0.38 -0.6
926,236 + Pf1N1B4_809 0.38 -0.4
926,237 - Pf1N1B4_809 0.39 -1.1
926,237 - Pf1N1B4_809 0.39 -2.1
926,237 - +0.4
926,237 - Pf1N1B4_809 0.39 -0.3
926,267 + Pf1N1B4_809 0.45 -0.0
926,267 + Pf1N1B4_809 0.45 -1.6
926,268 - Pf1N1B4_809 0.45 -0.7
926,268 - Pf1N1B4_809 0.45 +0.2
926,269 + Pf1N1B4_809 0.45 -0.5
926,269 + Pf1N1B4_809 0.45 -0.5
926,270 - Pf1N1B4_809 0.45 -0.8
926,270 - Pf1N1B4_809 0.45 -0.2
926,270 - Pf1N1B4_809 0.45 -1.0
926,326 + -0.6
926,326 + Pf1N1B4_809 0.57 +0.1
926,326 + Pf1N1B4_809 0.57 -1.0
926,326 + Pf1N1B4_809 0.57 +0.8
926,327 - Pf1N1B4_809 0.57 -2.5
926,354 + Pf1N1B4_809 0.62 -0.1
926,354 + Pf1N1B4_809 0.62 +0.8
926,355 - Pf1N1B4_809 0.62 -0.6
926,416 + Pf1N1B4_809 0.75 -1.3
926,416 + Pf1N1B4_809 0.75 -0.0
926,647 - +1.4
926,666 - +1.0
926,768 + Pf1N1B4_810 0.22 -2.0
926,768 + Pf1N1B4_810 0.22 +0.2
926,769 - Pf1N1B4_810 0.23 -0.4
926,773 + Pf1N1B4_810 0.23 -0.6
926,773 + Pf1N1B4_810 0.23 -0.3
926,774 - Pf1N1B4_810 0.23 -0.9
926,774 - Pf1N1B4_810 0.23 -0.2
926,796 + Pf1N1B4_810 0.26 +0.6
926,796 + Pf1N1B4_810 0.26 +0.8
926,796 + Pf1N1B4_810 0.26 -0.1
926,796 + Pf1N1B4_810 0.26 +0.0
926,797 - Pf1N1B4_810 0.26 +0.2
926,797 - Pf1N1B4_810 0.26 +1.1
926,797 - Pf1N1B4_810 0.26 -0.1
926,797 - Pf1N1B4_810 0.26 -0.8
926,797 - Pf1N1B4_810 0.26 -0.0
926,797 - Pf1N1B4_810 0.26 -0.2
926,858 + Pf1N1B4_810 0.34 -0.5
926,859 - Pf1N1B4_810 0.34 -0.1
926,910 + Pf1N1B4_810 0.40 -0.5
926,910 + Pf1N1B4_810 0.40 -0.3
926,911 - Pf1N1B4_810 0.40 -0.1
927,015 + Pf1N1B4_810 0.53 +0.2
927,016 - Pf1N1B4_810 0.53 -0.1
927,016 - Pf1N1B4_810 0.53 -0.5
927,016 - Pf1N1B4_810 0.53 +0.7
927,016 - Pf1N1B4_810 0.53 +0.5
927,147 + Pf1N1B4_810 0.70 +0.4
927,147 + Pf1N1B4_810 0.70 +1.9
927,147 + Pf1N1B4_810 0.70 -0.8
927,147 + Pf1N1B4_810 0.70 +0.4
927,148 - Pf1N1B4_810 0.70 +0.1
927,148 - Pf1N1B4_810 0.70 -0.6
927,148 - Pf1N1B4_810 0.70 -0.2
927,216 + Pf1N1B4_810 0.78 -0.5
927,216 + Pf1N1B4_810 0.78 +0.1
927,216 + Pf1N1B4_810 0.78 -0.6
927,216 + Pf1N1B4_810 0.78 +0.1
927,220 + Pf1N1B4_810 0.79 -0.7
927,220 + Pf1N1B4_810 0.79 -0.6
927,221 - Pf1N1B4_810 0.79 +0.1
927,240 + Pf1N1B4_810 0.81 +0.8
927,240 + Pf1N1B4_810 0.81 +0.2
927,304 + Pf1N1B4_810 0.89 +0.4
927,304 + Pf1N1B4_810 0.89 +0.4
927,304 + Pf1N1B4_810 0.89 -1.5
927,308 + Pf1N1B4_810 0.90 +0.9
927,308 + Pf1N1B4_810 0.90 -0.5
927,308 + Pf1N1B4_810 0.90 +0.1
927,308 + Pf1N1B4_810 0.90 +0.0
927,309 - -0.4
927,331 + -0.8
927,332 - +0.6
927,515 + Pf1N1B4_811 0.10 +0.3
927,515 + Pf1N1B4_811 0.10 +0.9
927,515 + Pf1N1B4_811 0.10 +0.3
927,515 + Pf1N1B4_811 0.10 +1.4

Or see this region's nucleotide sequence