Experiment: Time16-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4729 and Pf1N1B4_4730 are separated by 282 nucleotides Pf1N1B4_4730 and Pf1N1B4_4731 are separated by 342 nucleotides Pf1N1B4_4731 and Pf1N1B4_4732 are separated by 126 nucleotides
Pf1N1B4_4729 - Hemolysin-type calcium-binding region, at 5,226,195 to 5,227,484
_4729
Pf1N1B4_4730 - FIG00960186: hypothetical protein, at 5,227,767 to 5,228,030
_4730
Pf1N1B4_4731 - Sigma-54 dependent transcriptional regulator, at 5,228,373 to 5,229,698
_4731
Pf1N1B4_4732 - Fap amyloid fiber secretin, at 5,229,825 to 5,230,994
_4732
Position (kb) 5228
5229
5230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5227.653 kb on - strand at 5227.704 kb on + strand at 5227.704 kb on + strand at 5227.719 kb on + strand at 5227.719 kb on + strand at 5227.720 kb on - strand at 5227.768 kb on + strand at 5227.799 kb on - strand, within Pf1N1B4_4730 at 5227.930 kb on - strand, within Pf1N1B4_4730 at 5228.045 kb on - strand at 5228.045 kb on - strand at 5228.047 kb on - strand at 5228.047 kb on - strand at 5228.103 kb on - strand at 5228.242 kb on - strand at 5228.248 kb on - strand at 5228.267 kb on - strand at 5228.480 kb on + strand at 5228.480 kb on + strand at 5228.481 kb on - strand at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.259 kb on - strand, within Pf1N1B4_4731 at 5229.351 kb on + strand, within Pf1N1B4_4731 at 5229.352 kb on - strand, within Pf1N1B4_4731 at 5229.352 kb on - strand, within Pf1N1B4_4731 at 5229.598 kb on + strand at 5229.598 kb on + strand at 5229.598 kb on + strand at 5229.598 kb on + strand at 5229.599 kb on - strand at 5229.603 kb on - strand at 5229.644 kb on - strand at 5229.659 kb on + strand at 5229.666 kb on + strand at 5229.666 kb on + strand at 5229.666 kb on + strand at 5229.814 kb on + strand at 5229.815 kb on - strand at 5229.815 kb on - strand at 5229.832 kb on + strand at 5229.833 kb on - strand at 5229.833 kb on - strand at 5230.049 kb on + strand, within Pf1N1B4_4732 at 5230.177 kb on + strand at 5230.177 kb on + strand at 5230.177 kb on + strand, within Pf1N1B4_4732 at 5230.183 kb on + strand, within Pf1N1B4_4732 at 5230.184 kb on - strand at 5230.184 kb on - strand, within Pf1N1B4_4732 at 5230.411 kb on + strand, within Pf1N1B4_4732 at 5230.507 kb on + strand, within Pf1N1B4_4732 at 5230.507 kb on + strand at 5230.687 kb on + strand, within Pf1N1B4_4732 at 5230.688 kb on - strand, within Pf1N1B4_4732 at 5230.696 kb on + strand, within Pf1N1B4_4732 at 5230.696 kb on + strand, within Pf1N1B4_4732
Per-strain Table
Position Strand Gene LocusTag Fraction Time16-nophage remove 5,227,653 - -0.5 5,227,704 + -0.2 5,227,704 + +0.4 5,227,719 + -1.4 5,227,719 + +0.3 5,227,720 - +1.0 5,227,768 + +1.4 5,227,799 - Pf1N1B4_4730 0.12 -2.4 5,227,930 - Pf1N1B4_4730 0.62 +0.3 5,228,045 - +0.6 5,228,045 - -3.1 5,228,047 - -0.4 5,228,047 - -1.0 5,228,103 - -0.5 5,228,242 - +0.6 5,228,248 - +1.4 5,228,267 - +0.7 5,228,480 + +0.5 5,228,480 + +0.5 5,228,481 - -2.8 5,229,259 - Pf1N1B4_4731 0.67 +0.0 5,229,259 - Pf1N1B4_4731 0.67 +1.0 5,229,259 - Pf1N1B4_4731 0.67 +0.0 5,229,259 - Pf1N1B4_4731 0.67 -1.1 5,229,351 + Pf1N1B4_4731 0.74 -1.8 5,229,352 - Pf1N1B4_4731 0.74 +0.7 5,229,352 - Pf1N1B4_4731 0.74 -1.0 5,229,598 + -0.5 5,229,598 + -2.7 5,229,598 + -0.1 5,229,598 + +0.4 5,229,599 - -0.0 5,229,603 - -0.4 5,229,644 - -0.2 5,229,659 + -1.0 5,229,666 + +0.2 5,229,666 + +0.0 5,229,666 + -1.0 5,229,814 + -0.1 5,229,815 - +2.6 5,229,815 - -0.5 5,229,832 + -0.2 5,229,833 - -1.0 5,229,833 - -0.2 5,230,049 + Pf1N1B4_4732 0.19 +1.0 5,230,177 + +0.5 5,230,177 + +0.8 5,230,177 + Pf1N1B4_4732 0.30 -0.2 5,230,183 + Pf1N1B4_4732 0.31 -0.5 5,230,184 - +1.0 5,230,184 - Pf1N1B4_4732 0.31 -1.0 5,230,411 + Pf1N1B4_4732 0.50 -0.0 5,230,507 + Pf1N1B4_4732 0.58 -0.3 5,230,507 + +0.0 5,230,687 + Pf1N1B4_4732 0.74 +1.5 5,230,688 - Pf1N1B4_4732 0.74 +0.1 5,230,696 + Pf1N1B4_4732 0.74 +0.5 5,230,696 + Pf1N1B4_4732 0.74 +0.2
Or see this region's nucleotide sequence