Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1458

Experiment: Time16-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1456 and Pf1N1B4_1457 are separated by 182 nucleotidesPf1N1B4_1457 and Pf1N1B4_1458 are separated by 276 nucleotidesPf1N1B4_1458 and Pf1N1B4_1459 overlap by 4 nucleotides Pf1N1B4_1456 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 1,670,010 to 1,670,690 _1456 Pf1N1B4_1457 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 1,670,873 to 1,671,172 _1457 Pf1N1B4_1458 - Probable transcription regulator Mig-14, at 1,671,449 to 1,672,348 _1458 Pf1N1B4_1459 - Lipid A export ATP-binding/permease protein MsbA, at 1,672,345 to 1,674,135 _1459 Position (kb) 1671 1672 1673Strain fitness (log2 ratio) -2 -1 0 1 2at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.580 kb on + strand, within Pf1N1B4_1456at 1670.581 kb on - strand, within Pf1N1B4_1456at 1670.581 kb on - strand, within Pf1N1B4_1456at 1670.581 kb on - strand, within Pf1N1B4_1456at 1670.581 kb on - strand, within Pf1N1B4_1456at 1670.581 kb on - strand, within Pf1N1B4_1456at 1670.581 kb on - strand, within Pf1N1B4_1456at 1670.581 kb on - strand, within Pf1N1B4_1456at 1670.649 kb on + strandat 1670.650 kb on - strandat 1670.650 kb on - strandat 1670.656 kb on + strandat 1670.656 kb on + strandat 1670.656 kb on + strandat 1670.656 kb on + strandat 1670.656 kb on + strandat 1670.657 kb on - strandat 1670.657 kb on - strandat 1670.657 kb on - strandat 1670.657 kb on - strandat 1670.657 kb on - strandat 1670.660 kb on - strandat 1670.660 kb on - strandat 1670.845 kb on - strandat 1670.846 kb on + strandat 1670.846 kb on + strandat 1670.847 kb on - strandat 1670.927 kb on - strand, within Pf1N1B4_1457at 1670.927 kb on - strand, within Pf1N1B4_1457at 1670.927 kb on - strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.978 kb on + strand, within Pf1N1B4_1457at 1670.979 kb on - strand, within Pf1N1B4_1457at 1670.979 kb on - strand, within Pf1N1B4_1457at 1670.979 kb on - strand, within Pf1N1B4_1457at 1670.979 kb on - strand, within Pf1N1B4_1457at 1670.979 kb on - strand, within Pf1N1B4_1457at 1670.979 kb on - strand, within Pf1N1B4_1457at 1670.979 kb on - strand, within Pf1N1B4_1457at 1671.083 kb on + strand, within Pf1N1B4_1457at 1671.083 kb on + strand, within Pf1N1B4_1457at 1671.084 kb on - strand, within Pf1N1B4_1457at 1671.084 kb on - strand, within Pf1N1B4_1457at 1671.232 kb on - strandat 1671.254 kb on + strandat 1671.255 kb on - strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.347 kb on - strandat 1671.349 kb on + strandat 1671.349 kb on + strandat 1671.349 kb on + strandat 1671.350 kb on - strandat 1671.350 kb on - strandat 1671.350 kb on - strandat 1671.350 kb on - strandat 1671.406 kb on - strandat 1671.584 kb on + strand, within Pf1N1B4_1458at 1671.636 kb on + strand, within Pf1N1B4_1458at 1671.636 kb on + strand, within Pf1N1B4_1458at 1671.636 kb on + strand, within Pf1N1B4_1458at 1671.636 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.813 kb on + strand, within Pf1N1B4_1458at 1671.924 kb on + strand, within Pf1N1B4_1458at 1671.924 kb on + strand, within Pf1N1B4_1458at 1671.924 kb on + strand, within Pf1N1B4_1458at 1671.924 kb on + strand, within Pf1N1B4_1458

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Per-strain Table

Position Strand Gene LocusTag Fraction Time16-nophage
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1,670,580 + Pf1N1B4_1456 0.84 +1.5
1,670,580 + Pf1N1B4_1456 0.84 -1.1
1,670,580 + Pf1N1B4_1456 0.84 -1.3
1,670,580 + Pf1N1B4_1456 0.84 -1.0
1,670,580 + Pf1N1B4_1456 0.84 -0.8
1,670,580 + Pf1N1B4_1456 0.84 +0.1
1,670,580 + Pf1N1B4_1456 0.84 -1.5
1,670,580 + Pf1N1B4_1456 0.84 -1.1
1,670,580 + Pf1N1B4_1456 0.84 -1.4
1,670,580 + Pf1N1B4_1456 0.84 -1.7
1,670,581 - Pf1N1B4_1456 0.84 -0.6
1,670,581 - Pf1N1B4_1456 0.84 -0.9
1,670,581 - Pf1N1B4_1456 0.84 -0.1
1,670,581 - Pf1N1B4_1456 0.84 -0.4
1,670,581 - Pf1N1B4_1456 0.84 +0.2
1,670,581 - Pf1N1B4_1456 0.84 +0.3
1,670,581 - Pf1N1B4_1456 0.84 -0.3
1,670,649 + -0.7
1,670,650 - -0.6
1,670,650 - -1.6
1,670,656 + -1.1
1,670,656 + -0.3
1,670,656 + +1.5
1,670,656 + -0.4
1,670,656 + -0.5
1,670,657 - -1.3
1,670,657 - -1.5
1,670,657 - +0.6
1,670,657 - -0.5
1,670,657 - +0.0
1,670,660 - +0.5
1,670,660 - +0.5
1,670,845 - -0.5
1,670,846 + -1.1
1,670,846 + -0.2
1,670,847 - -0.2
1,670,927 - Pf1N1B4_1457 0.18 -0.8
1,670,927 - Pf1N1B4_1457 0.18 -0.1
1,670,927 - Pf1N1B4_1457 0.18 -0.0
1,670,978 + Pf1N1B4_1457 0.35 -1.5
1,670,978 + Pf1N1B4_1457 0.35 -0.8
1,670,978 + Pf1N1B4_1457 0.35 -1.4
1,670,978 + Pf1N1B4_1457 0.35 -0.9
1,670,978 + Pf1N1B4_1457 0.35 -0.8
1,670,978 + Pf1N1B4_1457 0.35 -1.9
1,670,978 + Pf1N1B4_1457 0.35 -0.1
1,670,978 + Pf1N1B4_1457 0.35 -0.4
1,670,978 + Pf1N1B4_1457 0.35 -0.0
1,670,979 - Pf1N1B4_1457 0.35 -0.2
1,670,979 - Pf1N1B4_1457 0.35 -0.5
1,670,979 - Pf1N1B4_1457 0.35 +0.5
1,670,979 - Pf1N1B4_1457 0.35 -0.3
1,670,979 - Pf1N1B4_1457 0.35 -1.1
1,670,979 - Pf1N1B4_1457 0.35 -0.3
1,670,979 - Pf1N1B4_1457 0.35 -0.9
1,671,083 + Pf1N1B4_1457 0.70 -1.3
1,671,083 + Pf1N1B4_1457 0.70 -1.7
1,671,084 - Pf1N1B4_1457 0.70 -1.1
1,671,084 - Pf1N1B4_1457 0.70 -1.5
1,671,232 - +0.2
1,671,254 + -0.5
1,671,255 - -1.3
1,671,346 + -0.5
1,671,346 + +0.8
1,671,346 + +0.0
1,671,346 + -0.9
1,671,346 + +0.1
1,671,346 + -0.3
1,671,346 + -1.4
1,671,346 + -0.1
1,671,347 - -0.6
1,671,347 - -1.3
1,671,347 - -0.1
1,671,347 - -0.2
1,671,347 - +0.2
1,671,347 - +0.1
1,671,347 - +0.3
1,671,347 - -0.3
1,671,347 - -0.8
1,671,347 - -0.3
1,671,347 - +2.5
1,671,347 - +0.6
1,671,349 + -1.0
1,671,349 + -0.2
1,671,349 + -1.0
1,671,350 - -1.4
1,671,350 - -0.2
1,671,350 - -0.3
1,671,350 - +0.1
1,671,406 - -0.7
1,671,584 + Pf1N1B4_1458 0.15 +0.5
1,671,636 + Pf1N1B4_1458 0.21 -0.1
1,671,636 + Pf1N1B4_1458 0.21 -0.6
1,671,636 + Pf1N1B4_1458 0.21 -0.5
1,671,636 + Pf1N1B4_1458 0.21 -2.4
1,671,813 + Pf1N1B4_1458 0.40 -1.0
1,671,813 + Pf1N1B4_1458 0.40 -0.1
1,671,813 + Pf1N1B4_1458 0.40 -1.2
1,671,813 + Pf1N1B4_1458 0.40 -0.9
1,671,813 + Pf1N1B4_1458 0.40 -2.5
1,671,813 + Pf1N1B4_1458 0.40 -0.5
1,671,813 + Pf1N1B4_1458 0.40 -1.7
1,671,813 + Pf1N1B4_1458 0.40 -1.0
1,671,813 + Pf1N1B4_1458 0.40 -2.1
1,671,813 + Pf1N1B4_1458 0.40 -1.2
1,671,813 + Pf1N1B4_1458 0.40 +0.1
1,671,813 + Pf1N1B4_1458 0.40 -0.8
1,671,813 + Pf1N1B4_1458 0.40 -1.0
1,671,813 + Pf1N1B4_1458 0.40 +0.1
1,671,813 + Pf1N1B4_1458 0.40 -0.6
1,671,813 + Pf1N1B4_1458 0.40 -1.8
1,671,813 + Pf1N1B4_1458 0.40 -1.9
1,671,813 + Pf1N1B4_1458 0.40 -1.1
1,671,813 + Pf1N1B4_1458 0.40 -1.6
1,671,813 + Pf1N1B4_1458 0.40 -0.3
1,671,813 + Pf1N1B4_1458 0.40 -1.4
1,671,813 + Pf1N1B4_1458 0.40 -0.5
1,671,924 + Pf1N1B4_1458 0.53 -2.7
1,671,924 + Pf1N1B4_1458 0.53 -2.1
1,671,924 + Pf1N1B4_1458 0.53 -1.1
1,671,924 + Pf1N1B4_1458 0.53 -0.5

Or see this region's nucleotide sequence