Experiment: Time16-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_140 and Pf1N1B4_141 are separated by 272 nucleotides Pf1N1B4_141 and Pf1N1B4_142 are separated by 210 nucleotides
Pf1N1B4_140 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 157,242 to 158,129
_140
Pf1N1B4_141 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 158,402 to 160,051
_141
Pf1N1B4_142 - TonB-dependent siderophore receptor precursor, at 160,262 to 162,742
_142
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 157.542 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.743 kb on + strand, within Pf1N1B4_140 at 157.744 kb on - strand at 157.831 kb on - strand, within Pf1N1B4_140 at 157.848 kb on + strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 158.113 kb on + strand at 158.215 kb on + strand at 158.230 kb on - strand at 158.230 kb on - strand at 158.314 kb on + strand at 158.315 kb on - strand at 158.335 kb on + strand at 158.336 kb on - strand at 158.365 kb on + strand at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.646 kb on - strand, within Pf1N1B4_141 at 158.769 kb on + strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141 at 159.245 kb on + strand, within Pf1N1B4_141 at 159.245 kb on + strand, within Pf1N1B4_141 at 159.245 kb on + strand, within Pf1N1B4_141 at 159.246 kb on - strand, within Pf1N1B4_141 at 159.384 kb on - strand, within Pf1N1B4_141 at 159.569 kb on + strand, within Pf1N1B4_141 at 159.570 kb on - strand, within Pf1N1B4_141 at 159.668 kb on + strand, within Pf1N1B4_141 at 159.669 kb on - strand, within Pf1N1B4_141 at 159.669 kb on - strand, within Pf1N1B4_141 at 159.669 kb on - strand, within Pf1N1B4_141 at 159.671 kb on + strand, within Pf1N1B4_141 at 159.672 kb on - strand, within Pf1N1B4_141 at 159.729 kb on - strand, within Pf1N1B4_141 at 160.068 kb on - strand at 160.145 kb on - strand at 160.145 kb on - strand at 160.145 kb on - strand at 160.145 kb on - strand at 160.239 kb on - strand at 160.382 kb on + strand at 160.382 kb on + strand at 160.382 kb on + strand at 160.382 kb on + strand at 160.478 kb on + strand at 160.478 kb on + strand at 160.479 kb on - strand at 160.479 kb on - strand at 160.479 kb on - strand at 160.479 kb on - strand at 160.851 kb on - strand, within Pf1N1B4_142 at 160.874 kb on + strand, within Pf1N1B4_142 at 160.874 kb on + strand, within Pf1N1B4_142 at 160.949 kb on + strand, within Pf1N1B4_142 at 160.949 kb on + strand, within Pf1N1B4_142 at 160.950 kb on - strand, within Pf1N1B4_142 at 160.989 kb on - strand, within Pf1N1B4_142 at 160.989 kb on - strand, within Pf1N1B4_142 at 160.989 kb on - strand, within Pf1N1B4_142
Per-strain Table
Position Strand Gene LocusTag Fraction Time16-nophage remove 157,542 + Pf1N1B4_140 0.34 -0.9 157,677 + Pf1N1B4_140 0.49 +0.3 157,677 + Pf1N1B4_140 0.49 +0.7 157,677 + Pf1N1B4_140 0.49 -0.2 157,677 + Pf1N1B4_140 0.49 -0.1 157,743 + Pf1N1B4_140 0.56 -0.7 157,744 - +1.6 157,831 - Pf1N1B4_140 0.66 -0.2 157,848 + Pf1N1B4_140 0.68 -0.8 157,921 - Pf1N1B4_140 0.76 +0.4 157,921 - Pf1N1B4_140 0.76 -0.6 157,953 + Pf1N1B4_140 0.80 -0.1 157,953 + Pf1N1B4_140 0.80 +0.8 157,954 - Pf1N1B4_140 0.80 +0.9 157,954 - Pf1N1B4_140 0.80 +0.3 157,954 - Pf1N1B4_140 0.80 +0.7 157,954 - Pf1N1B4_140 0.80 +0.2 158,113 + +0.4 158,215 + -1.1 158,230 - +0.4 158,230 - -0.9 158,314 + -1.3 158,315 - +0.9 158,335 + +0.1 158,336 - -1.2 158,365 + -2.5 158,645 + Pf1N1B4_141 0.15 -0.2 158,645 + Pf1N1B4_141 0.15 -1.5 158,645 + Pf1N1B4_141 0.15 -0.7 158,645 + Pf1N1B4_141 0.15 -0.5 158,646 - Pf1N1B4_141 0.15 -1.9 158,769 + Pf1N1B4_141 0.22 -1.7 158,770 - Pf1N1B4_141 0.22 +0.1 158,770 - Pf1N1B4_141 0.22 -1.1 158,878 - Pf1N1B4_141 0.29 -0.3 158,878 - Pf1N1B4_141 0.29 -1.9 159,116 - Pf1N1B4_141 0.43 -0.6 159,116 - Pf1N1B4_141 0.43 -0.6 159,245 + Pf1N1B4_141 0.51 +0.1 159,245 + Pf1N1B4_141 0.51 +0.1 159,245 + Pf1N1B4_141 0.51 -0.5 159,246 - Pf1N1B4_141 0.51 -0.7 159,384 - Pf1N1B4_141 0.60 -0.8 159,569 + Pf1N1B4_141 0.71 +1.1 159,570 - Pf1N1B4_141 0.71 -1.1 159,668 + Pf1N1B4_141 0.77 -2.9 159,669 - Pf1N1B4_141 0.77 -0.2 159,669 - Pf1N1B4_141 0.77 +0.4 159,669 - Pf1N1B4_141 0.77 +0.1 159,671 + Pf1N1B4_141 0.77 -2.1 159,672 - Pf1N1B4_141 0.77 -1.7 159,729 - Pf1N1B4_141 0.80 -1.4 160,068 - +0.4 160,145 - -0.6 160,145 - +0.5 160,145 - +1.1 160,145 - -0.1 160,239 - +1.5 160,382 + +1.4 160,382 + +0.4 160,382 + +0.8 160,382 + -2.2 160,478 + +0.9 160,478 + -0.4 160,479 - +0.7 160,479 - +0.1 160,479 - -0.9 160,479 - +0.0 160,851 - Pf1N1B4_142 0.24 -0.3 160,874 + Pf1N1B4_142 0.25 -1.2 160,874 + Pf1N1B4_142 0.25 -0.2 160,949 + Pf1N1B4_142 0.28 +0.5 160,949 + Pf1N1B4_142 0.28 -1.9 160,950 - Pf1N1B4_142 0.28 -0.1 160,989 - Pf1N1B4_142 0.29 -0.8 160,989 - Pf1N1B4_142 0.29 -0.1 160,989 - Pf1N1B4_142 0.29 +1.1
Or see this region's nucleotide sequence