Experiment: Time16-FRS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5708 and Pf1N1B4_5709 are separated by 355 nucleotides Pf1N1B4_5709 and Pf1N1B4_5710 are separated by 22 nucleotides Pf1N1B4_5710 and Pf1N1B4_5711 are separated by 92 nucleotides
Pf1N1B4_5708 - Transcriptional regulator, TetR family, at 146,847 to 147,461
_5708
Pf1N1B4_5709 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 147,817 to 149,052
_5709
Pf1N1B4_5710 - Transcriptional regulator, TetR family, at 149,075 to 149,629
_5710
Pf1N1B4_5711 - Salicylate hydroxylase (EC 1.14.13.1), at 149,722 to 151,380
_5711
Position (kb)
147
148
149
150 Strain fitness (log2 ratio)
-2
-1
0
1 at 147.330 kb on - strand, within Pf1N1B4_5708 at 147.332 kb on - strand, within Pf1N1B4_5708 at 147.332 kb on - strand, within Pf1N1B4_5708 at 147.480 kb on - strand at 147.567 kb on + strand at 147.567 kb on + strand at 147.567 kb on + strand at 147.590 kb on + strand at 147.591 kb on - strand at 147.591 kb on - strand at 147.591 kb on - strand at 147.623 kb on + strand at 147.747 kb on - strand at 148.148 kb on + strand, within Pf1N1B4_5709 at 148.148 kb on + strand, within Pf1N1B4_5709 at 148.149 kb on - strand, within Pf1N1B4_5709 at 148.278 kb on + strand, within Pf1N1B4_5709 at 148.604 kb on - strand, within Pf1N1B4_5709 at 148.664 kb on - strand, within Pf1N1B4_5709 at 149.026 kb on + strand at 149.121 kb on - strand at 149.175 kb on - strand, within Pf1N1B4_5710 at 149.219 kb on + strand, within Pf1N1B4_5710 at 149.219 kb on + strand, within Pf1N1B4_5710 at 149.526 kb on + strand, within Pf1N1B4_5710 at 149.527 kb on - strand, within Pf1N1B4_5710 at 149.732 kb on - strand at 149.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time16-FRS remove 147,330 - Pf1N1B4_5708 0.79 -1.8 147,332 - Pf1N1B4_5708 0.79 -0.3 147,332 - Pf1N1B4_5708 0.79 -1.5 147,480 - +1.3 147,567 + -1.0 147,567 + -1.5 147,567 + -0.7 147,590 + +1.3 147,591 - +1.0 147,591 - +0.2 147,591 - -0.8 147,623 + +0.3 147,747 - -0.1 148,148 + Pf1N1B4_5709 0.27 -0.3 148,148 + Pf1N1B4_5709 0.27 -0.4 148,149 - Pf1N1B4_5709 0.27 -0.6 148,278 + Pf1N1B4_5709 0.37 -0.7 148,604 - Pf1N1B4_5709 0.64 -1.3 148,664 - Pf1N1B4_5709 0.69 -0.3 149,026 + +0.3 149,121 - -0.3 149,175 - Pf1N1B4_5710 0.18 +0.3 149,219 + Pf1N1B4_5710 0.26 -0.3 149,219 + Pf1N1B4_5710 0.26 -1.9 149,526 + Pf1N1B4_5710 0.81 +0.3 149,527 - Pf1N1B4_5710 0.81 +0.3 149,732 - -0.0 149,856 + -0.7
Or see this region's nucleotide sequence