Experiment: Time16-FRS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5667 and Pf1N1B4_5668 are separated by 191 nucleotides Pf1N1B4_5668 and Pf1N1B4_5669 are separated by 202 nucleotides Pf1N1B4_5669 and Pf1N1B4_5670 are separated by 64 nucleotides
Pf1N1B4_5667 - hypothetical protein, at 100,927 to 104,862
_5667
Pf1N1B4_5668 - Peptidase, U7 family, at 105,054 to 106,076
_5668
Pf1N1B4_5669 - Phosphoglycerate mutase family protein, at 106,279 to 106,989
_5669
Pf1N1B4_5670 - SCP-2 sterol transfer family protein, at 107,054 to 107,368
_5670
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 104.071 kb on - strand, within Pf1N1B4_5667 at 104.071 kb on - strand, within Pf1N1B4_5667 at 104.336 kb on + strand at 104.336 kb on + strand, within Pf1N1B4_5667 at 104.336 kb on + strand, within Pf1N1B4_5667 at 104.337 kb on - strand, within Pf1N1B4_5667 at 104.337 kb on - strand, within Pf1N1B4_5667 at 104.337 kb on - strand, within Pf1N1B4_5667 at 104.337 kb on - strand, within Pf1N1B4_5667 at 104.459 kb on + strand, within Pf1N1B4_5667 at 104.459 kb on + strand at 104.460 kb on - strand, within Pf1N1B4_5667 at 104.460 kb on - strand, within Pf1N1B4_5667 at 104.546 kb on + strand at 104.594 kb on + strand at 104.595 kb on - strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.678 kb on + strand at 104.679 kb on - strand at 104.679 kb on - strand at 104.679 kb on - strand at 104.682 kb on + strand at 104.683 kb on - strand at 104.683 kb on - strand at 104.683 kb on - strand at 104.685 kb on - strand at 104.736 kb on + strand at 104.899 kb on + strand at 104.921 kb on - strand at 105.056 kb on - strand at 105.208 kb on + strand, within Pf1N1B4_5668 at 105.208 kb on + strand, within Pf1N1B4_5668 at 105.209 kb on - strand at 105.285 kb on + strand at 105.286 kb on - strand, within Pf1N1B4_5668 at 105.566 kb on - strand, within Pf1N1B4_5668 at 106.291 kb on + strand at 106.291 kb on + strand at 106.333 kb on + strand at 106.333 kb on + strand at 107.030 kb on + strand at 107.030 kb on + strand at 107.030 kb on + strand at 107.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time16-FRS remove 104,071 - Pf1N1B4_5667 0.80 +1.3 104,071 - Pf1N1B4_5667 0.80 +0.9 104,336 + -0.5 104,336 + Pf1N1B4_5667 0.87 -0.7 104,336 + Pf1N1B4_5667 0.87 +1.1 104,337 - Pf1N1B4_5667 0.87 +0.2 104,337 - Pf1N1B4_5667 0.87 -0.3 104,337 - Pf1N1B4_5667 0.87 -0.7 104,337 - Pf1N1B4_5667 0.87 -0.3 104,459 + Pf1N1B4_5667 0.90 +0.7 104,459 + +0.3 104,460 - Pf1N1B4_5667 0.90 -1.0 104,460 - Pf1N1B4_5667 0.90 +0.4 104,546 + +1.0 104,594 + -1.3 104,595 - +0.9 104,678 + +0.3 104,678 + -1.6 104,678 + -1.4 104,678 + +0.3 104,678 + -1.0 104,678 + +2.3 104,678 + -0.2 104,678 + +1.7 104,678 + +0.7 104,678 + +2.0 104,679 - +0.0 104,679 - -0.4 104,679 - -0.4 104,682 + +0.8 104,683 - +0.0 104,683 - +0.3 104,683 - +0.3 104,685 - -0.1 104,736 + +0.3 104,899 + +1.3 104,921 - -0.5 105,056 - +0.2 105,208 + Pf1N1B4_5668 0.15 -2.3 105,208 + Pf1N1B4_5668 0.15 -1.0 105,209 - -0.7 105,285 + -1.8 105,286 - Pf1N1B4_5668 0.23 -0.8 105,566 - Pf1N1B4_5668 0.50 +0.8 106,291 + +0.7 106,291 + -2.0 106,333 + +1.7 106,333 + +0.0 107,030 + +0.0 107,030 + +0.6 107,030 + -0.3 107,030 + -1.7
Or see this region's nucleotide sequence