Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5996

Experiment: Time6-FRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5995 and Pf1N1B4_5996 are separated by 91 nucleotidesPf1N1B4_5996 and Pf1N1B4_5997 are separated by 87 nucleotidesPf1N1B4_5997 and Pf1N1B4_5998 are separated by 14 nucleotides Pf1N1B4_5995 - Transporter, MFS superfamily, at 445,703 to 447,034 _5995 Pf1N1B4_5996 - Transposase, at 447,126 to 448,178 _5996 Pf1N1B4_5997 - Taurine dioxygenase (EC 1.14.11.17), at 448,266 to 449,114 _5997 Pf1N1B4_5998 - Quinone oxidoreductase (EC 1.6.5.5), at 449,129 to 450,109 _5998 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2at 446.247 kb on + strand, within Pf1N1B4_5995at 446.263 kb on - strand, within Pf1N1B4_5995at 446.323 kb on - strand, within Pf1N1B4_5995at 446.357 kb on - strand, within Pf1N1B4_5995at 446.544 kb on - strand, within Pf1N1B4_5995at 446.698 kb on - strand, within Pf1N1B4_5995at 446.922 kb on + strandat 446.922 kb on + strandat 446.923 kb on - strandat 446.971 kb on - strandat 447.058 kb on + strandat 447.058 kb on + strandat 447.059 kb on - strandat 447.059 kb on - strandat 447.059 kb on - strandat 447.230 kb on - strandat 447.230 kb on - strandat 447.344 kb on + strand, within Pf1N1B4_5996at 447.345 kb on - strand, within Pf1N1B4_5996at 447.345 kb on - strand, within Pf1N1B4_5996at 447.375 kb on - strand, within Pf1N1B4_5996at 447.544 kb on + strand, within Pf1N1B4_5996at 447.544 kb on + strand, within Pf1N1B4_5996at 447.544 kb on + strand, within Pf1N1B4_5996at 447.545 kb on - strand, within Pf1N1B4_5996at 447.545 kb on - strand, within Pf1N1B4_5996at 448.027 kb on + strand, within Pf1N1B4_5996at 448.111 kb on + strandat 448.184 kb on - strandat 448.189 kb on + strandat 448.189 kb on + strandat 448.189 kb on + strandat 448.189 kb on + strandat 448.190 kb on - strandat 448.195 kb on + strandat 448.195 kb on + strandat 448.270 kb on + strandat 448.350 kb on - strandat 448.406 kb on - strand, within Pf1N1B4_5997at 448.417 kb on + strand, within Pf1N1B4_5997at 448.418 kb on - strand, within Pf1N1B4_5997at 448.418 kb on - strand, within Pf1N1B4_5997at 448.501 kb on + strand, within Pf1N1B4_5997at 448.501 kb on + strand, within Pf1N1B4_5997at 448.502 kb on - strandat 448.594 kb on + strand, within Pf1N1B4_5997at 448.868 kb on - strand, within Pf1N1B4_5997at 449.130 kb on + strandat 449.131 kb on - strandat 449.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-FRS
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446,247 + Pf1N1B4_5995 0.41 +0.9
446,263 - Pf1N1B4_5995 0.42 +1.3
446,323 - Pf1N1B4_5995 0.47 +1.7
446,357 - Pf1N1B4_5995 0.49 -0.7
446,544 - Pf1N1B4_5995 0.63 +0.3
446,698 - Pf1N1B4_5995 0.75 +0.9
446,922 + -0.6
446,922 + +0.3
446,923 - +0.3
446,971 - +0.3
447,058 + -1.3
447,058 + -0.3
447,059 - -0.7
447,059 - +0.1
447,059 - -0.8
447,230 - -0.5
447,230 - +0.2
447,344 + Pf1N1B4_5996 0.21 +1.0
447,345 - Pf1N1B4_5996 0.21 +0.3
447,345 - Pf1N1B4_5996 0.21 -0.5
447,375 - Pf1N1B4_5996 0.24 -0.6
447,544 + Pf1N1B4_5996 0.40 -1.3
447,544 + Pf1N1B4_5996 0.40 +0.2
447,544 + Pf1N1B4_5996 0.40 -0.5
447,545 - Pf1N1B4_5996 0.40 +0.3
447,545 - Pf1N1B4_5996 0.40 -0.0
448,027 + Pf1N1B4_5996 0.86 -0.9
448,111 + -1.0
448,184 - -0.7
448,189 + +1.7
448,189 + +0.1
448,189 + +0.6
448,189 + +0.3
448,190 - -1.3
448,195 + -0.5
448,195 + -0.3
448,270 + -0.3
448,350 - -0.7
448,406 - Pf1N1B4_5997 0.16 -0.9
448,417 + Pf1N1B4_5997 0.18 -0.7
448,418 - Pf1N1B4_5997 0.18 +0.7
448,418 - Pf1N1B4_5997 0.18 +2.6
448,501 + Pf1N1B4_5997 0.28 +0.0
448,501 + Pf1N1B4_5997 0.28 -1.3
448,502 - -1.3
448,594 + Pf1N1B4_5997 0.39 -2.5
448,868 - Pf1N1B4_5997 0.71 -0.7
449,130 + -0.2
449,131 - -0.7
449,131 - -0.3

Or see this region's nucleotide sequence