Experiment: Time6-FRS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4604 and Pf1N1B4_4605 are separated by 229 nucleotides Pf1N1B4_4605 and Pf1N1B4_4606 are separated by 125 nucleotides Pf1N1B4_4606 and Pf1N1B4_4607 are separated by 22 nucleotides Pf1N1B4_4607 and Pf1N1B4_4608 overlap by 25 nucleotides
Pf1N1B4_4604 - FMN reductase, NADPH-dependent, at 5,077,178 to 5,077,738
_4604
Pf1N1B4_4605 - FIG00953564: hypothetical protein, at 5,077,968 to 5,078,918
_4605
Pf1N1B4_4606 - NAD kinase (EC 2.7.1.23), at 5,079,044 to 5,079,364
_4606
Pf1N1B4_4607 - NAD kinase (EC 2.7.1.23), at 5,079,387 to 5,079,728
_4607
Pf1N1B4_4608 - NAD kinase (EC 2.7.1.23), at 5,079,704 to 5,079,934
_4608
Position (kb)
5077
5078
5079 Strain fitness (log2 ratio)
-1
0
1 at 5077.038 kb on + strand at 5077.058 kb on + strand at 5077.136 kb on + strand at 5077.136 kb on + strand at 5077.137 kb on - strand at 5077.137 kb on - strand at 5077.137 kb on - strand at 5077.137 kb on - strand at 5077.138 kb on + strand at 5077.138 kb on + strand at 5077.138 kb on + strand at 5077.139 kb on - strand at 5077.142 kb on + strand at 5077.142 kb on + strand at 5077.142 kb on + strand at 5077.142 kb on + strand at 5077.142 kb on + strand at 5077.143 kb on - strand at 5077.190 kb on + strand at 5077.320 kb on - strand, within Pf1N1B4_4604 at 5077.418 kb on + strand, within Pf1N1B4_4604 at 5077.418 kb on + strand, within Pf1N1B4_4604 at 5077.616 kb on + strand, within Pf1N1B4_4604 at 5077.617 kb on - strand, within Pf1N1B4_4604 at 5077.726 kb on + strand at 5077.726 kb on + strand at 5077.726 kb on + strand at 5077.727 kb on - strand at 5077.745 kb on + strand at 5077.745 kb on + strand at 5077.745 kb on + strand at 5077.745 kb on + strand at 5077.745 kb on + strand at 5077.745 kb on + strand at 5077.745 kb on + strand at 5077.746 kb on - strand at 5077.746 kb on - strand at 5077.759 kb on + strand at 5077.759 kb on + strand at 5077.759 kb on + strand at 5077.760 kb on - strand at 5077.861 kb on - strand at 5078.315 kb on - strand at 5078.665 kb on + strand, within Pf1N1B4_4605 at 5078.665 kb on + strand at 5078.665 kb on + strand, within Pf1N1B4_4605 at 5078.668 kb on + strand, within Pf1N1B4_4605 at 5078.719 kb on + strand, within Pf1N1B4_4605 at 5078.720 kb on - strand, within Pf1N1B4_4605 at 5078.890 kb on - strand at 5078.910 kb on + strand at 5078.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time6-FRS remove 5,077,038 + -0.3 5,077,058 + +0.3 5,077,136 + -0.4 5,077,136 + -1.0 5,077,137 - -1.0 5,077,137 - -0.5 5,077,137 - -1.3 5,077,137 - +0.5 5,077,138 + -0.4 5,077,138 + +0.3 5,077,138 + +0.3 5,077,139 - -0.3 5,077,142 + -0.5 5,077,142 + -1.4 5,077,142 + -1.4 5,077,142 + +0.3 5,077,142 + -1.0 5,077,143 - -0.4 5,077,190 + +0.3 5,077,320 - Pf1N1B4_4604 0.25 -0.8 5,077,418 + Pf1N1B4_4604 0.43 +0.1 5,077,418 + Pf1N1B4_4604 0.43 -0.8 5,077,616 + Pf1N1B4_4604 0.78 -0.7 5,077,617 - Pf1N1B4_4604 0.78 -0.3 5,077,726 + +0.4 5,077,726 + -0.3 5,077,726 + -0.7 5,077,727 - +1.3 5,077,745 + +1.3 5,077,745 + +0.2 5,077,745 + -0.7 5,077,745 + +1.5 5,077,745 + +1.1 5,077,745 + -0.7 5,077,745 + +0.1 5,077,746 - +0.7 5,077,746 - -0.7 5,077,759 + -0.8 5,077,759 + +1.3 5,077,759 + -0.6 5,077,760 - -0.9 5,077,861 - -0.3 5,078,315 - -0.7 5,078,665 + Pf1N1B4_4605 0.73 -1.1 5,078,665 + -1.3 5,078,665 + Pf1N1B4_4605 0.73 -0.0 5,078,668 + Pf1N1B4_4605 0.74 -0.7 5,078,719 + Pf1N1B4_4605 0.79 +0.4 5,078,720 - Pf1N1B4_4605 0.79 -0.0 5,078,890 - +0.3 5,078,910 + -1.5 5,078,911 - +0.8
Or see this region's nucleotide sequence