Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1620

Experiment: Time6-FRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1619 and Pf1N1B4_1620 are separated by 1 nucleotidesPf1N1B4_1620 and Pf1N1B4_1621 are separated by 104 nucleotides Pf1N1B4_1619 - Carboxyl-terminal protease (EC 3.4.21.102), at 1,863,440 to 1,864,759 _1619 Pf1N1B4_1620 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 1,864,761 to 1,865,558 _1620 Pf1N1B4_1621 - Trypsin domain protein, at 1,865,663 to 1,866,901 _1621 Position (kb) 1864 1865 1866Strain fitness (log2 ratio) -3 -2 -1 0 1at 1863.873 kb on + strand, within Pf1N1B4_1619at 1863.873 kb on + strand, within Pf1N1B4_1619at 1863.873 kb on + strand, within Pf1N1B4_1619at 1863.873 kb on + strand, within Pf1N1B4_1619at 1863.873 kb on + strand, within Pf1N1B4_1619at 1863.874 kb on - strand, within Pf1N1B4_1619at 1863.874 kb on - strand, within Pf1N1B4_1619at 1863.874 kb on - strand, within Pf1N1B4_1619at 1863.969 kb on + strand, within Pf1N1B4_1619at 1864.065 kb on - strand, within Pf1N1B4_1619at 1864.177 kb on + strand, within Pf1N1B4_1619at 1864.178 kb on - strand, within Pf1N1B4_1619at 1864.178 kb on - strand, within Pf1N1B4_1619at 1864.250 kb on + strand, within Pf1N1B4_1619at 1864.250 kb on + strand, within Pf1N1B4_1619at 1864.251 kb on - strand, within Pf1N1B4_1619at 1864.251 kb on - strand, within Pf1N1B4_1619at 1864.251 kb on - strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.496 kb on + strand, within Pf1N1B4_1619at 1864.497 kb on - strand, within Pf1N1B4_1619at 1864.497 kb on - strand, within Pf1N1B4_1619at 1864.497 kb on - strand, within Pf1N1B4_1619at 1864.497 kb on - strand, within Pf1N1B4_1619at 1864.497 kb on - strand, within Pf1N1B4_1619at 1864.497 kb on - strand, within Pf1N1B4_1619at 1864.497 kb on - strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.499 kb on + strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.500 kb on - strand, within Pf1N1B4_1619at 1864.592 kb on + strand, within Pf1N1B4_1619at 1864.593 kb on - strand, within Pf1N1B4_1619at 1864.593 kb on - strand, within Pf1N1B4_1619at 1864.593 kb on - strand, within Pf1N1B4_1619at 1864.593 kb on - strand, within Pf1N1B4_1619at 1864.593 kb on - strand, within Pf1N1B4_1619at 1864.593 kb on - strand, within Pf1N1B4_1619at 1864.593 kb on - strand, within Pf1N1B4_1619at 1864.649 kb on - strandat 1864.854 kb on + strand, within Pf1N1B4_1620at 1864.854 kb on + strand, within Pf1N1B4_1620at 1864.854 kb on + strand, within Pf1N1B4_1620at 1864.855 kb on - strand, within Pf1N1B4_1620at 1864.855 kb on - strand, within Pf1N1B4_1620at 1864.855 kb on - strand, within Pf1N1B4_1620at 1864.855 kb on - strand, within Pf1N1B4_1620at 1864.855 kb on - strand, within Pf1N1B4_1620at 1864.855 kb on - strand, within Pf1N1B4_1620at 1865.115 kb on + strand, within Pf1N1B4_1620at 1865.116 kb on - strand, within Pf1N1B4_1620at 1865.118 kb on - strandat 1865.129 kb on - strand, within Pf1N1B4_1620at 1865.129 kb on - strand, within Pf1N1B4_1620at 1865.129 kb on - strand, within Pf1N1B4_1620at 1865.129 kb on - strand, within Pf1N1B4_1620at 1865.129 kb on - strand, within Pf1N1B4_1620at 1865.341 kb on + strand, within Pf1N1B4_1620at 1865.342 kb on - strand, within Pf1N1B4_1620at 1865.342 kb on - strand, within Pf1N1B4_1620at 1865.351 kb on + strand, within Pf1N1B4_1620at 1865.556 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.594 kb on + strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.595 kb on - strandat 1865.596 kb on + strandat 1865.596 kb on + strandat 1865.596 kb on + strandat 1865.596 kb on + strandat 1865.597 kb on - strandat 1865.597 kb on - strandat 1865.597 kb on - strandat 1865.597 kb on - strandat 1865.669 kb on + strandat 1865.669 kb on + strandat 1865.670 kb on - strandat 1865.670 kb on - strandat 1865.670 kb on - strandat 1865.670 kb on - strandat 1865.713 kb on + strandat 1865.713 kb on + strandat 1865.714 kb on - strandat 1865.714 kb on - strandat 1865.714 kb on - strandat 1865.714 kb on - strandat 1865.863 kb on - strand, within Pf1N1B4_1621at 1865.863 kb on - strand, within Pf1N1B4_1621at 1865.906 kb on + strand, within Pf1N1B4_1621at 1865.906 kb on + strand, within Pf1N1B4_1621at 1865.907 kb on - strand, within Pf1N1B4_1621at 1865.907 kb on - strand, within Pf1N1B4_1621at 1865.932 kb on - strand, within Pf1N1B4_1621at 1865.932 kb on - strand, within Pf1N1B4_1621at 1865.993 kb on + strand, within Pf1N1B4_1621at 1866.006 kb on + strand, within Pf1N1B4_1621at 1866.006 kb on + strand, within Pf1N1B4_1621at 1866.007 kb on - strand, within Pf1N1B4_1621at 1866.007 kb on - strand, within Pf1N1B4_1621at 1866.016 kb on + strand, within Pf1N1B4_1621at 1866.017 kb on - strand, within Pf1N1B4_1621at 1866.027 kb on - strand, within Pf1N1B4_1621at 1866.027 kb on - strand, within Pf1N1B4_1621at 1866.078 kb on + strand, within Pf1N1B4_1621at 1866.087 kb on + strand, within Pf1N1B4_1621at 1866.087 kb on + strand, within Pf1N1B4_1621at 1866.087 kb on + strand, within Pf1N1B4_1621at 1866.087 kb on + strand, within Pf1N1B4_1621at 1866.112 kb on - strand, within Pf1N1B4_1621at 1866.156 kb on - strand, within Pf1N1B4_1621at 1866.370 kb on + strand, within Pf1N1B4_1621at 1866.449 kb on + strand, within Pf1N1B4_1621at 1866.449 kb on + strand, within Pf1N1B4_1621at 1866.449 kb on + strand, within Pf1N1B4_1621at 1866.449 kb on + strandat 1866.450 kb on - strand, within Pf1N1B4_1621at 1866.450 kb on - strand, within Pf1N1B4_1621at 1866.455 kb on + strand, within Pf1N1B4_1621at 1866.455 kb on + strand, within Pf1N1B4_1621at 1866.456 kb on - strand, within Pf1N1B4_1621at 1866.484 kb on + strand, within Pf1N1B4_1621at 1866.484 kb on + strand, within Pf1N1B4_1621at 1866.485 kb on - strand, within Pf1N1B4_1621

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-FRS
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1,863,873 + Pf1N1B4_1619 0.33 +1.3
1,863,873 + Pf1N1B4_1619 0.33 -1.4
1,863,873 + Pf1N1B4_1619 0.33 -0.7
1,863,873 + Pf1N1B4_1619 0.33 -0.4
1,863,873 + Pf1N1B4_1619 0.33 +0.1
1,863,874 - Pf1N1B4_1619 0.33 +0.6
1,863,874 - Pf1N1B4_1619 0.33 -0.5
1,863,874 - Pf1N1B4_1619 0.33 -1.2
1,863,969 + Pf1N1B4_1619 0.40 +0.3
1,864,065 - Pf1N1B4_1619 0.47 -0.1
1,864,177 + Pf1N1B4_1619 0.56 +0.3
1,864,178 - Pf1N1B4_1619 0.56 -1.7
1,864,178 - Pf1N1B4_1619 0.56 -1.2
1,864,250 + Pf1N1B4_1619 0.61 -1.0
1,864,250 + Pf1N1B4_1619 0.61 +0.6
1,864,251 - Pf1N1B4_1619 0.61 -0.8
1,864,251 - Pf1N1B4_1619 0.61 +0.1
1,864,251 - Pf1N1B4_1619 0.61 +1.0
1,864,496 + Pf1N1B4_1619 0.80 -0.3
1,864,496 + Pf1N1B4_1619 0.80 -0.0
1,864,496 + Pf1N1B4_1619 0.80 -0.2
1,864,496 + Pf1N1B4_1619 0.80 -1.9
1,864,496 + Pf1N1B4_1619 0.80 +0.3
1,864,496 + Pf1N1B4_1619 0.80 -0.8
1,864,496 + Pf1N1B4_1619 0.80 +0.7
1,864,496 + Pf1N1B4_1619 0.80 -0.7
1,864,496 + Pf1N1B4_1619 0.80 +0.3
1,864,497 - Pf1N1B4_1619 0.80 -1.5
1,864,497 - Pf1N1B4_1619 0.80 +0.6
1,864,497 - Pf1N1B4_1619 0.80 -0.6
1,864,497 - Pf1N1B4_1619 0.80 -0.4
1,864,497 - Pf1N1B4_1619 0.80 -0.5
1,864,497 - Pf1N1B4_1619 0.80 +1.1
1,864,497 - Pf1N1B4_1619 0.80 -2.2
1,864,499 + Pf1N1B4_1619 0.80 +0.3
1,864,499 + Pf1N1B4_1619 0.80 +1.0
1,864,499 + Pf1N1B4_1619 0.80 -0.6
1,864,499 + Pf1N1B4_1619 0.80 +0.9
1,864,499 + Pf1N1B4_1619 0.80 -0.5
1,864,499 + Pf1N1B4_1619 0.80 -0.8
1,864,499 + Pf1N1B4_1619 0.80 -0.5
1,864,499 + Pf1N1B4_1619 0.80 +0.7
1,864,499 + Pf1N1B4_1619 0.80 -0.8
1,864,499 + Pf1N1B4_1619 0.80 -0.4
1,864,499 + Pf1N1B4_1619 0.80 -0.0
1,864,499 + Pf1N1B4_1619 0.80 -0.1
1,864,500 - Pf1N1B4_1619 0.80 +0.3
1,864,500 - Pf1N1B4_1619 0.80 +0.0
1,864,500 - Pf1N1B4_1619 0.80 -0.1
1,864,500 - Pf1N1B4_1619 0.80 +0.7
1,864,500 - Pf1N1B4_1619 0.80 -0.6
1,864,500 - Pf1N1B4_1619 0.80 -0.5
1,864,500 - Pf1N1B4_1619 0.80 -0.4
1,864,500 - Pf1N1B4_1619 0.80 -0.6
1,864,500 - Pf1N1B4_1619 0.80 -0.3
1,864,500 - Pf1N1B4_1619 0.80 -1.2
1,864,500 - Pf1N1B4_1619 0.80 -0.2
1,864,500 - Pf1N1B4_1619 0.80 +1.6
1,864,500 - Pf1N1B4_1619 0.80 -1.3
1,864,500 - Pf1N1B4_1619 0.80 +1.0
1,864,592 + Pf1N1B4_1619 0.87 -0.4
1,864,593 - Pf1N1B4_1619 0.87 +1.3
1,864,593 - Pf1N1B4_1619 0.87 +0.4
1,864,593 - Pf1N1B4_1619 0.87 +0.6
1,864,593 - Pf1N1B4_1619 0.87 -0.5
1,864,593 - Pf1N1B4_1619 0.87 +0.6
1,864,593 - Pf1N1B4_1619 0.87 +0.6
1,864,593 - Pf1N1B4_1619 0.87 +0.5
1,864,649 - -0.1
1,864,854 + Pf1N1B4_1620 0.12 -1.0
1,864,854 + Pf1N1B4_1620 0.12 -2.0
1,864,854 + Pf1N1B4_1620 0.12 -1.2
1,864,855 - Pf1N1B4_1620 0.12 +0.5
1,864,855 - Pf1N1B4_1620 0.12 -0.9
1,864,855 - Pf1N1B4_1620 0.12 +1.6
1,864,855 - Pf1N1B4_1620 0.12 -0.8
1,864,855 - Pf1N1B4_1620 0.12 -1.6
1,864,855 - Pf1N1B4_1620 0.12 -1.3
1,865,115 + Pf1N1B4_1620 0.44 +0.7
1,865,116 - Pf1N1B4_1620 0.44 -0.7
1,865,118 - -0.7
1,865,129 - Pf1N1B4_1620 0.46 -0.2
1,865,129 - Pf1N1B4_1620 0.46 +1.0
1,865,129 - Pf1N1B4_1620 0.46 +0.1
1,865,129 - Pf1N1B4_1620 0.46 -0.2
1,865,129 - Pf1N1B4_1620 0.46 -0.8
1,865,341 + Pf1N1B4_1620 0.73 -0.3
1,865,342 - Pf1N1B4_1620 0.73 -0.9
1,865,342 - Pf1N1B4_1620 0.73 -0.1
1,865,351 + Pf1N1B4_1620 0.74 +1.0
1,865,556 + -0.5
1,865,590 + -0.7
1,865,590 + +0.3
1,865,590 + -0.9
1,865,590 + +0.2
1,865,590 + -0.1
1,865,590 + -0.0
1,865,590 + +1.0
1,865,590 + +0.6
1,865,590 + +0.7
1,865,590 + +0.6
1,865,590 + +1.6
1,865,590 + -0.4
1,865,590 + +0.4
1,865,590 + -0.1
1,865,590 + +0.0
1,865,590 + +0.7
1,865,590 + -0.1
1,865,590 + +0.5
1,865,590 + -0.1
1,865,590 + -0.4
1,865,591 - -0.3
1,865,591 - +0.3
1,865,591 - -0.3
1,865,591 - -0.7
1,865,591 - +0.5
1,865,591 - -0.7
1,865,591 - -0.3
1,865,591 - -0.5
1,865,591 - -0.2
1,865,591 - -0.2
1,865,591 - -0.8
1,865,591 - +1.1
1,865,594 + -2.1
1,865,594 + +0.7
1,865,594 + +0.4
1,865,594 + +0.2
1,865,594 + +0.3
1,865,594 + +1.1
1,865,594 + +0.9
1,865,594 + +0.9
1,865,594 + +1.1
1,865,594 + -0.5
1,865,594 + +0.8
1,865,594 + -1.0
1,865,594 + -0.5
1,865,594 + +0.2
1,865,595 - +0.4
1,865,595 - -1.4
1,865,595 - +0.1
1,865,595 - +0.8
1,865,595 - +0.6
1,865,595 - +1.3
1,865,595 - -0.3
1,865,595 - -0.7
1,865,595 - +1.0
1,865,595 - -2.4
1,865,595 - +0.9
1,865,595 - +0.5
1,865,596 + -0.3
1,865,596 + +0.1
1,865,596 + -0.7
1,865,596 + +1.3
1,865,597 - -0.1
1,865,597 - +0.9
1,865,597 - +0.0
1,865,597 - -1.0
1,865,669 + +0.3
1,865,669 + +0.2
1,865,670 - +0.1
1,865,670 - +0.2
1,865,670 - +0.3
1,865,670 - +1.5
1,865,713 + -0.5
1,865,713 + -0.8
1,865,714 - +0.2
1,865,714 - +0.2
1,865,714 - -0.3
1,865,714 - -1.4
1,865,863 - Pf1N1B4_1621 0.16 +0.6
1,865,863 - Pf1N1B4_1621 0.16 -2.8
1,865,906 + Pf1N1B4_1621 0.20 -1.0
1,865,906 + Pf1N1B4_1621 0.20 +0.1
1,865,907 - Pf1N1B4_1621 0.20 +0.7
1,865,907 - Pf1N1B4_1621 0.20 -0.2
1,865,932 - Pf1N1B4_1621 0.22 -0.5
1,865,932 - Pf1N1B4_1621 0.22 +1.0
1,865,993 + Pf1N1B4_1621 0.27 -0.1
1,866,006 + Pf1N1B4_1621 0.28 +0.8
1,866,006 + Pf1N1B4_1621 0.28 -0.4
1,866,007 - Pf1N1B4_1621 0.28 +0.2
1,866,007 - Pf1N1B4_1621 0.28 -0.5
1,866,016 + Pf1N1B4_1621 0.28 -1.5
1,866,017 - Pf1N1B4_1621 0.29 -0.0
1,866,027 - Pf1N1B4_1621 0.29 +1.3
1,866,027 - Pf1N1B4_1621 0.29 +0.6
1,866,078 + Pf1N1B4_1621 0.33 -1.0
1,866,087 + Pf1N1B4_1621 0.34 -0.6
1,866,087 + Pf1N1B4_1621 0.34 -0.1
1,866,087 + Pf1N1B4_1621 0.34 +1.1
1,866,087 + Pf1N1B4_1621 0.34 +0.3
1,866,112 - Pf1N1B4_1621 0.36 +0.1
1,866,156 - Pf1N1B4_1621 0.40 +0.2
1,866,370 + Pf1N1B4_1621 0.57 +0.4
1,866,449 + Pf1N1B4_1621 0.63 -0.9
1,866,449 + Pf1N1B4_1621 0.63 +0.8
1,866,449 + Pf1N1B4_1621 0.63 +1.7
1,866,449 + -1.3
1,866,450 - Pf1N1B4_1621 0.64 -0.6
1,866,450 - Pf1N1B4_1621 0.64 +0.1
1,866,455 + Pf1N1B4_1621 0.64 +0.8
1,866,455 + Pf1N1B4_1621 0.64 -0.7
1,866,456 - Pf1N1B4_1621 0.64 -0.2
1,866,484 + Pf1N1B4_1621 0.66 +0.7
1,866,484 + Pf1N1B4_1621 0.66 +0.3
1,866,485 - Pf1N1B4_1621 0.66 -1.0

Or see this region's nucleotide sequence