Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS05940 and LRK54_RS05945 are separated by 199 nucleotides LRK54_RS05945 and LRK54_RS05950 are separated by 174 nucleotides LRK54_RS05950 and LRK54_RS05955 are separated by 40 nucleotides LRK54_RS05955 and LRK54_RS05960 are separated by 52 nucleotides
LRK54_RS05940: LRK54_RS05940 - hypothetical protein, at 1,281,311 to 1,281,550
_RS05940
LRK54_RS05945: LRK54_RS05945 - hypothetical protein, at 1,281,750 to 1,282,001
_RS05945
LRK54_RS05950: LRK54_RS05950 - tRNA-Thr, at 1,282,176 to 1,282,251
_RS05950
LRK54_RS05955: LRK54_RS05955 - SPOR domain-containing protein, at 1,282,292 to 1,282,957
_RS05955
LRK54_RS05960: LRK54_RS05960 - type III pantothenate kinase, at 1,283,010 to 1,283,750
_RS05960
Position (kb) 1282
1283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1281.191 kb on + strand at 1281.191 kb on + strand at 1281.191 kb on + strand at 1281.191 kb on + strand at 1281.192 kb on - strand at 1281.192 kb on - strand at 1281.348 kb on + strand, within LRK54_RS05940 at 1281.348 kb on + strand, within LRK54_RS05940 at 1281.349 kb on - strand, within LRK54_RS05940 at 1281.349 kb on - strand, within LRK54_RS05940 at 1281.477 kb on + strand, within LRK54_RS05940 at 1281.477 kb on + strand, within LRK54_RS05940 at 1281.477 kb on + strand, within LRK54_RS05940 at 1281.477 kb on + strand, within LRK54_RS05940 at 1281.477 kb on + strand, within LRK54_RS05940 at 1281.477 kb on + strand, within LRK54_RS05940 at 1281.478 kb on - strand, within LRK54_RS05940 at 1281.478 kb on - strand, within LRK54_RS05940 at 1281.478 kb on - strand, within LRK54_RS05940 at 1281.478 kb on - strand, within LRK54_RS05940 at 1281.478 kb on - strand, within LRK54_RS05940 at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.663 kb on + strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.664 kb on - strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.679 kb on + strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.680 kb on - strand at 1281.690 kb on + strand at 1281.690 kb on + strand at 1281.691 kb on - strand at 1281.691 kb on - strand at 1281.691 kb on - strand at 1281.826 kb on + strand, within LRK54_RS05945 at 1281.826 kb on + strand, within LRK54_RS05945 at 1281.826 kb on + strand, within LRK54_RS05945 at 1281.827 kb on - strand, within LRK54_RS05945 at 1281.859 kb on + strand, within LRK54_RS05945 at 1281.860 kb on - strand, within LRK54_RS05945 at 1281.860 kb on - strand, within LRK54_RS05945 at 1281.860 kb on - strand, within LRK54_RS05945 at 1281.860 kb on - strand, within LRK54_RS05945 at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.988 kb on + strand at 1281.989 kb on - strand at 1281.989 kb on - strand at 1281.989 kb on - strand at 1281.989 kb on - strand at 1281.989 kb on - strand at 1281.989 kb on - strand at 1281.995 kb on + strand at 1281.995 kb on + strand at 1281.996 kb on - strand at 1281.996 kb on - strand at 1281.996 kb on - strand at 1282.052 kb on + strand at 1282.052 kb on + strand at 1282.052 kb on + strand at 1282.052 kb on + strand at 1282.052 kb on + strand at 1282.052 kb on + strand at 1282.052 kb on + strand at 1282.052 kb on + strand at 1282.053 kb on - strand at 1282.053 kb on - strand at 1282.053 kb on - strand at 1282.053 kb on - strand at 1282.075 kb on + strand at 1282.076 kb on - strand at 1282.263 kb on - strand at 1282.267 kb on + strand at 1282.267 kb on + strand at 1282.267 kb on + strand at 1282.267 kb on + strand at 1282.267 kb on + strand at 1282.267 kb on + strand at 1282.267 kb on + strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.268 kb on - strand at 1282.389 kb on + strand, within LRK54_RS05955 at 1282.389 kb on + strand, within LRK54_RS05955 at 1282.390 kb on - strand, within LRK54_RS05955 at 1282.536 kb on + strand, within LRK54_RS05955 at 1282.536 kb on + strand, within LRK54_RS05955 at 1282.536 kb on + strand, within LRK54_RS05955 at 1282.536 kb on + strand, within LRK54_RS05955 at 1282.536 kb on + strand, within LRK54_RS05955 at 1282.536 kb on + strand, within LRK54_RS05955 at 1282.536 kb on + strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.537 kb on - strand, within LRK54_RS05955 at 1282.611 kb on + strand, within LRK54_RS05955 at 1282.611 kb on + strand, within LRK54_RS05955 at 1282.611 kb on + strand, within LRK54_RS05955 at 1282.611 kb on + strand, within LRK54_RS05955 at 1282.611 kb on + strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.612 kb on - strand, within LRK54_RS05955 at 1282.743 kb on + strand, within LRK54_RS05955 at 1282.743 kb on + strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.744 kb on - strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.878 kb on + strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.879 kb on - strand, within LRK54_RS05955 at 1282.991 kb on + strand at 1282.991 kb on + strand at 1282.991 kb on + strand at 1282.991 kb on + strand at 1282.991 kb on + strand at 1282.992 kb on - strand at 1282.992 kb on - strand at 1282.992 kb on - strand at 1282.992 kb on - strand at 1282.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 1,281,191 + +0.0 1,281,191 + +0.4 1,281,191 + -1.6 1,281,191 + -0.6 1,281,192 - -1.9 1,281,192 - -0.7 1,281,348 + LRK54_RS05940 0.15 -1.6 1,281,348 + LRK54_RS05940 0.15 -1.0 1,281,349 - LRK54_RS05940 0.16 +1.3 1,281,349 - LRK54_RS05940 0.16 +0.8 1,281,477 + LRK54_RS05940 0.69 +0.0 1,281,477 + LRK54_RS05940 0.69 -0.9 1,281,477 + LRK54_RS05940 0.69 +1.0 1,281,477 + LRK54_RS05940 0.69 +0.6 1,281,477 + LRK54_RS05940 0.69 +0.0 1,281,477 + LRK54_RS05940 0.69 -1.8 1,281,478 - LRK54_RS05940 0.70 -0.9 1,281,478 - LRK54_RS05940 0.70 -1.3 1,281,478 - LRK54_RS05940 0.70 -0.3 1,281,478 - LRK54_RS05940 0.70 -1.2 1,281,478 - LRK54_RS05940 0.70 -1.0 1,281,663 + -1.2 1,281,663 + -0.6 1,281,663 + -0.7 1,281,663 + -0.3 1,281,663 + -0.6 1,281,663 + -0.7 1,281,663 + -2.0 1,281,663 + +0.6 1,281,663 + -1.2 1,281,663 + -0.4 1,281,663 + -0.7 1,281,663 + +1.0 1,281,663 + -0.6 1,281,663 + +2.0 1,281,663 + +1.0 1,281,663 + +1.0 1,281,663 + -1.1 1,281,663 + +0.0 1,281,663 + +0.0 1,281,663 + +0.0 1,281,663 + -2.0 1,281,663 + -0.3 1,281,663 + -0.2 1,281,663 + -1.0 1,281,663 + -0.3 1,281,664 - -0.5 1,281,664 - -0.9 1,281,664 - +0.0 1,281,664 - -1.3 1,281,664 - +0.0 1,281,664 - +1.6 1,281,664 - -0.6 1,281,664 - +0.0 1,281,664 - -0.6 1,281,664 - +0.0 1,281,664 - -0.3 1,281,664 - -1.8 1,281,664 - -2.9 1,281,664 - -0.8 1,281,664 - +0.4 1,281,664 - -0.6 1,281,664 - -1.1 1,281,664 - +0.0 1,281,664 - -1.0 1,281,664 - -1.0 1,281,664 - -0.6 1,281,679 + -0.3 1,281,679 + -1.0 1,281,679 + -1.8 1,281,679 + +0.0 1,281,679 + -0.5 1,281,679 + +0.1 1,281,679 + +1.0 1,281,679 + -1.3 1,281,679 + -0.6 1,281,679 + +1.0 1,281,679 + -1.7 1,281,679 + -1.0 1,281,679 + +0.0 1,281,679 + +1.0 1,281,680 - -2.0 1,281,680 - -0.1 1,281,680 - -0.6 1,281,680 - +1.0 1,281,680 - -0.9 1,281,680 - +0.0 1,281,680 - -0.4 1,281,680 - +0.1 1,281,680 - +1.0 1,281,680 - +0.4 1,281,690 + +0.0 1,281,690 + -0.8 1,281,691 - +2.0 1,281,691 - +1.3 1,281,691 - -1.0 1,281,826 + LRK54_RS05945 0.30 +0.0 1,281,826 + LRK54_RS05945 0.30 -0.7 1,281,826 + LRK54_RS05945 0.30 -0.6 1,281,827 - LRK54_RS05945 0.31 -0.8 1,281,859 + LRK54_RS05945 0.43 -2.3 1,281,860 - LRK54_RS05945 0.44 -1.0 1,281,860 - LRK54_RS05945 0.44 -1.3 1,281,860 - LRK54_RS05945 0.44 +1.0 1,281,860 - LRK54_RS05945 0.44 +1.0 1,281,988 + -0.6 1,281,988 + -0.1 1,281,988 + -1.1 1,281,988 + -1.2 1,281,988 + +0.7 1,281,988 + -1.0 1,281,988 + +1.0 1,281,988 + +0.0 1,281,988 + +0.8 1,281,989 - +1.0 1,281,989 - -1.5 1,281,989 - +1.0 1,281,989 - +1.0 1,281,989 - -2.0 1,281,989 - -1.0 1,281,995 + -0.6 1,281,995 + -1.6 1,281,996 - -0.3 1,281,996 - +1.0 1,281,996 - -0.8 1,282,052 + -1.0 1,282,052 + -1.3 1,282,052 + +1.0 1,282,052 + +0.4 1,282,052 + -0.4 1,282,052 + +1.0 1,282,052 + -1.3 1,282,052 + -0.6 1,282,053 - -1.0 1,282,053 - +0.7 1,282,053 - +0.0 1,282,053 - -1.7 1,282,075 + -0.6 1,282,076 - +1.0 1,282,263 - +1.0 1,282,267 + +1.0 1,282,267 + +2.0 1,282,267 + +0.4 1,282,267 + -1.0 1,282,267 + -1.3 1,282,267 + -1.0 1,282,267 + +0.4 1,282,268 - +0.0 1,282,268 - -0.6 1,282,268 - +0.1 1,282,268 - +0.0 1,282,268 - -2.0 1,282,268 - -0.6 1,282,268 - -2.0 1,282,268 - -1.3 1,282,268 - +1.6 1,282,389 + LRK54_RS05955 0.15 -2.8 1,282,389 + LRK54_RS05955 0.15 -0.6 1,282,390 - LRK54_RS05955 0.15 -0.2 1,282,536 + LRK54_RS05955 0.37 -0.9 1,282,536 + LRK54_RS05955 0.37 +0.5 1,282,536 + LRK54_RS05955 0.37 +1.0 1,282,536 + LRK54_RS05955 0.37 -1.6 1,282,536 + LRK54_RS05955 0.37 -0.2 1,282,536 + LRK54_RS05955 0.37 +1.6 1,282,536 + LRK54_RS05955 0.37 -0.3 1,282,537 - LRK54_RS05955 0.37 -1.2 1,282,537 - LRK54_RS05955 0.37 -0.6 1,282,537 - LRK54_RS05955 0.37 -0.9 1,282,537 - LRK54_RS05955 0.37 -0.3 1,282,537 - LRK54_RS05955 0.37 -0.6 1,282,537 - LRK54_RS05955 0.37 +0.3 1,282,537 - LRK54_RS05955 0.37 -0.4 1,282,537 - LRK54_RS05955 0.37 +0.3 1,282,537 - LRK54_RS05955 0.37 +1.0 1,282,537 - LRK54_RS05955 0.37 -0.9 1,282,537 - LRK54_RS05955 0.37 -1.0 1,282,611 + LRK54_RS05955 0.48 +0.0 1,282,611 + LRK54_RS05955 0.48 -1.5 1,282,611 + LRK54_RS05955 0.48 -0.6 1,282,611 + LRK54_RS05955 0.48 -1.3 1,282,611 + LRK54_RS05955 0.48 -1.4 1,282,612 - LRK54_RS05955 0.48 +0.0 1,282,612 - LRK54_RS05955 0.48 +0.0 1,282,612 - LRK54_RS05955 0.48 -1.0 1,282,612 - LRK54_RS05955 0.48 -0.3 1,282,612 - LRK54_RS05955 0.48 +0.0 1,282,612 - LRK54_RS05955 0.48 -1.3 1,282,612 - LRK54_RS05955 0.48 -0.9 1,282,612 - LRK54_RS05955 0.48 +0.6 1,282,743 + LRK54_RS05955 0.68 +0.3 1,282,743 + LRK54_RS05955 0.68 -1.0 1,282,744 - LRK54_RS05955 0.68 -1.4 1,282,744 - LRK54_RS05955 0.68 +0.0 1,282,744 - LRK54_RS05955 0.68 +0.0 1,282,744 - LRK54_RS05955 0.68 +0.0 1,282,744 - LRK54_RS05955 0.68 -1.0 1,282,744 - LRK54_RS05955 0.68 -0.6 1,282,744 - LRK54_RS05955 0.68 -0.6 1,282,744 - LRK54_RS05955 0.68 -1.0 1,282,744 - LRK54_RS05955 0.68 +0.4 1,282,744 - LRK54_RS05955 0.68 +1.0 1,282,744 - LRK54_RS05955 0.68 +0.1 1,282,744 - LRK54_RS05955 0.68 +0.0 1,282,878 + LRK54_RS05955 0.88 +0.6 1,282,878 + LRK54_RS05955 0.88 +1.0 1,282,878 + LRK54_RS05955 0.88 +0.2 1,282,878 + LRK54_RS05955 0.88 -0.2 1,282,878 + LRK54_RS05955 0.88 -1.1 1,282,878 + LRK54_RS05955 0.88 +0.0 1,282,878 + LRK54_RS05955 0.88 +1.0 1,282,878 + LRK54_RS05955 0.88 -0.3 1,282,879 - LRK54_RS05955 0.88 -1.6 1,282,879 - LRK54_RS05955 0.88 -1.0 1,282,879 - LRK54_RS05955 0.88 -1.6 1,282,879 - LRK54_RS05955 0.88 -1.0 1,282,879 - LRK54_RS05955 0.88 -1.8 1,282,879 - LRK54_RS05955 0.88 -1.6 1,282,879 - LRK54_RS05955 0.88 -1.0 1,282,879 - LRK54_RS05955 0.88 +1.0 1,282,879 - LRK54_RS05955 0.88 -1.0 1,282,879 - LRK54_RS05955 0.88 +0.1 1,282,879 - LRK54_RS05955 0.88 +0.0 1,282,879 - LRK54_RS05955 0.88 +0.0 1,282,879 - LRK54_RS05955 0.88 +0.4 1,282,991 + +0.0 1,282,991 + +0.4 1,282,991 + -1.0 1,282,991 + +0.0 1,282,991 + -0.6 1,282,992 - -1.0 1,282,992 - +1.4 1,282,992 - +0.1 1,282,992 - +1.0 1,282,992 - +2.0
Or see this region's nucleotide sequence