Experiment: SA-T2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03650 and LRK54_RS03655 are separated by 76 nucleotides LRK54_RS03655 and LRK54_RS03660 are separated by 122 nucleotides LRK54_RS03660 and LRK54_RS03665 are separated by 137 nucleotides LRK54_RS03665 and LRK54_RS03670 are separated by 278 nucleotides LRK54_RS03670 and LRK54_RS03675 are separated by 139 nucleotides
LRK54_RS03650: LRK54_RS03650 - elongation factor Tu, at 777,137 to 778,327
_RS03650
LRK54_RS03655: LRK54_RS03655 - tRNA-Thr, at 778,404 to 778,479
_RS03655
LRK54_RS03660: LRK54_RS03660 - tRNA-Gly, at 778,602 to 778,675
_RS03660
LRK54_RS03665: LRK54_RS03665 - tRNA-Tyr, at 778,813 to 778,898
_RS03665
LRK54_RS03670: LRK54_RS03670 - acyl-CoA thioesterase, at 779,177 to 779,665
_RS03670
LRK54_RS03675: LRK54_RS03675 - redox-regulated ATPase YchF, at 779,805 to 780,893
_RS03675
Position (kb) 779
780 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 778.489 kb on - strand at 778.489 kb on - strand at 778.489 kb on - strand at 778.489 kb on - strand at 778.489 kb on - strand at 778.489 kb on - strand at 778.489 kb on - strand at 779.075 kb on - strand at 779.075 kb on - strand at 779.520 kb on + strand, within LRK54_RS03670 at 779.520 kb on + strand, within LRK54_RS03670 at 779.520 kb on + strand, within LRK54_RS03670 at 779.520 kb on + strand, within LRK54_RS03670 at 779.520 kb on + strand, within LRK54_RS03670 at 779.520 kb on + strand, within LRK54_RS03670 at 779.520 kb on + strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.521 kb on - strand, within LRK54_RS03670 at 779.550 kb on + strand, within LRK54_RS03670 at 779.551 kb on - strand, within LRK54_RS03670 at 779.551 kb on - strand, within LRK54_RS03670 at 779.656 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.692 kb on + strand at 779.693 kb on - strand at 779.693 kb on - strand at 779.693 kb on - strand at 779.693 kb on - strand at 779.693 kb on - strand at 779.693 kb on - strand at 779.693 kb on - strand at 779.703 kb on + strand at 779.703 kb on + strand at 779.703 kb on + strand at 779.703 kb on + strand at 779.703 kb on + strand at 779.703 kb on + strand at 779.703 kb on + strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.704 kb on - strand at 779.851 kb on + strand at 779.852 kb on - strand at 779.852 kb on - strand at 779.852 kb on - strand at 779.852 kb on - strand at 779.852 kb on - strand at 779.908 kb on + strand at 779.909 kb on - strand at 780.052 kb on + strand, within LRK54_RS03675 at 780.052 kb on + strand, within LRK54_RS03675 at 780.077 kb on - strand, within LRK54_RS03675 at 780.189 kb on + strand, within LRK54_RS03675 at 780.286 kb on + strand, within LRK54_RS03675 at 780.286 kb on + strand, within LRK54_RS03675 at 780.286 kb on + strand, within LRK54_RS03675 at 780.286 kb on + strand, within LRK54_RS03675 at 780.287 kb on - strand, within LRK54_RS03675 at 780.287 kb on - strand, within LRK54_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction SA-T2 remove 778,489 - -0.3 778,489 - -2.5 778,489 - -0.7 778,489 - -2.0 778,489 - -0.4 778,489 - -2.4 778,489 - +1.1 779,075 - +2.1 779,075 - -0.9 779,520 + LRK54_RS03670 0.70 +1.6 779,520 + LRK54_RS03670 0.70 -0.4 779,520 + LRK54_RS03670 0.70 +0.6 779,520 + LRK54_RS03670 0.70 -0.4 779,520 + LRK54_RS03670 0.70 +3.5 779,520 + LRK54_RS03670 0.70 -0.9 779,520 + LRK54_RS03670 0.70 -0.2 779,521 - LRK54_RS03670 0.70 +0.1 779,521 - LRK54_RS03670 0.70 -0.4 779,521 - LRK54_RS03670 0.70 -0.0 779,521 - LRK54_RS03670 0.70 +1.1 779,521 - LRK54_RS03670 0.70 -0.4 779,521 - LRK54_RS03670 0.70 +1.1 779,521 - LRK54_RS03670 0.70 +1.1 779,521 - LRK54_RS03670 0.70 -0.4 779,521 - LRK54_RS03670 0.70 +1.1 779,521 - LRK54_RS03670 0.70 -1.9 779,521 - LRK54_RS03670 0.70 -0.4 779,550 + LRK54_RS03670 0.76 +0.6 779,551 - LRK54_RS03670 0.76 -0.7 779,551 - LRK54_RS03670 0.76 -0.2 779,656 + +1.1 779,692 + -1.7 779,692 + +1.1 779,692 + +2.1 779,692 + -0.4 779,692 + -0.9 779,692 + +0.1 779,692 + -0.6 779,692 + +0.1 779,692 + +0.1 779,692 + -0.6 779,692 + -1.3 779,692 + +1.1 779,692 + +0.7 779,693 - +0.7 779,693 - +0.6 779,693 - +0.8 779,693 - +0.1 779,693 - +1.1 779,693 - +0.1 779,693 - +0.3 779,703 + +1.1 779,703 + -1.4 779,703 + -0.4 779,703 + -0.2 779,703 + +1.1 779,703 + -1.0 779,703 + +0.6 779,704 - +1.1 779,704 - +1.1 779,704 - +1.1 779,704 - +0.1 779,704 - -1.0 779,704 - -1.0 779,704 - -1.7 779,704 - +0.1 779,704 - -2.2 779,704 - -1.2 779,704 - -0.9 779,704 - -0.5 779,704 - -0.9 779,704 - -0.4 779,704 - -1.2 779,704 - -1.1 779,704 - +0.1 779,704 - -0.3 779,704 - -1.1 779,704 - +0.7 779,704 - +0.1 779,704 - +0.7 779,704 - +0.4 779,704 - -0.3 779,704 - -0.7 779,704 - -2.0 779,851 + +1.1 779,852 - +1.1 779,852 - +1.1 779,852 - +1.1 779,852 - +0.1 779,852 - +1.1 779,908 + +1.1 779,909 - +1.1 780,052 + LRK54_RS03675 0.23 +1.1 780,052 + LRK54_RS03675 0.23 +1.1 780,077 - LRK54_RS03675 0.25 +1.1 780,189 + LRK54_RS03675 0.35 +1.1 780,286 + LRK54_RS03675 0.44 +0.1 780,286 + LRK54_RS03675 0.44 +1.1 780,286 + LRK54_RS03675 0.44 +1.1 780,286 + LRK54_RS03675 0.44 +1.1 780,287 - LRK54_RS03675 0.44 +1.1 780,287 - LRK54_RS03675 0.44 +1.1
Or see this region's nucleotide sequence