Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17745

Experiment: 4E-T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4E-T2
3,882,763	+		LRK54_RS17740	0.56	-2.0
3,882,763	+		LRK54_RS17740	0.56	+0.7
3,882,763	+		LRK54_RS17740	0.56	+1.4
3,882,763	+		LRK54_RS17740	0.56	-1.1
3,882,764	-		LRK54_RS17740	0.56	-1.4
3,882,764	-		LRK54_RS17740	0.56	-0.2
3,882,764	-		LRK54_RS17740	0.56	-0.2
3,882,864	+		LRK54_RS17740	0.61	+0.4
3,882,864	+		LRK54_RS17740	0.61	+2.9
3,882,865	-		LRK54_RS17740	0.61	-0.6
3,882,993	+		LRK54_RS17740	0.67	-1.8
3,882,994	-		LRK54_RS17740	0.68	-1.6
3,882,994	-		LRK54_RS17740	0.68	-1.2
3,883,065	+		LRK54_RS17740	0.71	+1.4
3,883,065	+		LRK54_RS17740	0.71	-0.2
3,883,065	+		LRK54_RS17740	0.71	+2.9
3,883,065	+		LRK54_RS17740	0.71	+0.0
3,883,066	-		LRK54_RS17740	0.71	-1.8
3,883,066	-		LRK54_RS17740	0.71	+0.4
3,883,066	-		LRK54_RS17740	0.71	+0.4
3,883,131	+		LRK54_RS17740	0.75	-0.2
3,883,131	+		LRK54_RS17740	0.75	+1.4
3,883,131	+		LRK54_RS17740	0.75	+1.4
3,883,131	+		LRK54_RS17740	0.75	+0.4
3,883,132	-		LRK54_RS17740	0.75	-0.2
3,883,132	-		LRK54_RS17740	0.75	+2.9
3,883,318	+		LRK54_RS17740	0.84	-1.4
3,883,319	-		LRK54_RS17740	0.84	+1.4
3,883,319	-		LRK54_RS17740	0.84	-0.6
3,883,351	+		LRK54_RS17740	0.86	+2.1
3,883,351	+		LRK54_RS17740	0.86	+0.4
3,883,352	-		LRK54_RS17740	0.86	-2.0
3,883,352	-		LRK54_RS17740	0.86	-1.0
3,883,352	-		LRK54_RS17740	0.86	-1.4
3,883,352	-		LRK54_RS17740	0.86	-0.4
3,883,358	+		LRK54_RS17740	0.86	+0.4
3,883,359	-		LRK54_RS17740	0.86	+1.4
3,883,366	+		LRK54_RS17740	0.87	-0.6
3,883,367	-		LRK54_RS17740	0.87	-1.1
3,883,414	+		LRK54_RS17740	0.89	+1.4
3,883,414	+		LRK54_RS17740	0.89	-0.2
3,883,414	+		LRK54_RS17740	0.89	+0.4
3,883,414	+		LRK54_RS17740	0.89	-0.2
3,883,414	+		LRK54_RS17740	0.89	+0.6
3,883,415	-		LRK54_RS17740	0.89	-0.6
3,883,415	-		LRK54_RS17740	0.89	-3.0
3,883,415	-		LRK54_RS17740	0.89	+1.4
3,883,608	+				-1.0
3,883,608	+				-0.6
3,883,623	+				-0.9
3,883,623	+				-1.2
3,883,623	+				+0.4
3,883,624	-				+0.2
3,883,624	-				+0.4
3,883,624	-				-0.2
3,883,624	-				-0.4
3,883,624	-				-0.6
3,883,722	+		LRK54_RS17745	0.22	+1.4
3,883,797	+		LRK54_RS17745	0.45	+1.4
3,883,797	+		LRK54_RS17745	0.45	-0.1
3,883,797	+		LRK54_RS17745	0.45	-1.0
3,883,797	+		LRK54_RS17745	0.45	+1.4
3,883,797	+		LRK54_RS17745	0.45	-0.6
3,883,797	+		LRK54_RS17745	0.45	-1.3
3,883,797	+		LRK54_RS17745	0.45	-0.9
3,883,797	+		LRK54_RS17745	0.45	-1.4
3,883,797	+		LRK54_RS17745	0.45	+0.1
3,883,797	+		LRK54_RS17745	0.45	-1.8
3,883,797	+		LRK54_RS17745	0.45	-0.2
3,883,797	+		LRK54_RS17745	0.45	+1.4
3,883,797	+		LRK54_RS17745	0.45	-0.2
3,883,797	+		LRK54_RS17745	0.45	-0.6
3,883,798	-		LRK54_RS17745	0.45	+1.4
3,883,798	-		LRK54_RS17745	0.45	+0.4
3,883,798	-		LRK54_RS17745	0.45	-1.4
3,883,798	-		LRK54_RS17745	0.45	-0.2
3,883,798	-		LRK54_RS17745	0.45	+1.4
3,883,798	-		LRK54_RS17745	0.45	-0.2
3,883,798	-		LRK54_RS17745	0.45	+0.8
3,883,798	-		LRK54_RS17745	0.45	+0.4
3,883,798	-		LRK54_RS17745	0.45	-0.3
3,883,798	-		LRK54_RS17745	0.45	+0.4
3,883,798	-		LRK54_RS17745	0.45	-1.4
3,883,798	-		LRK54_RS17745	0.45	+0.4
3,883,798	-		LRK54_RS17745	0.45	+1.4
3,883,798	-		LRK54_RS17745	0.45	-2.1
3,883,798	-		LRK54_RS17745	0.45	+0.4
3,883,798	-		LRK54_RS17745	0.45	+0.4
3,883,798	-		LRK54_RS17745	0.45	-2.0
3,883,798	-		LRK54_RS17745	0.45	+0.4
3,883,798	-		LRK54_RS17745	0.45	+1.4
3,883,835	+		LRK54_RS17745	0.57	-0.6
3,883,835	+		LRK54_RS17745	0.57	-1.6
3,883,835	+		LRK54_RS17745	0.57	-1.3
3,883,835	+		LRK54_RS17745	0.57	+0.8
3,883,836	-		LRK54_RS17745	0.57	+0.9
3,883,907	+		LRK54_RS17745	0.79	+0.4
3,883,907	+		LRK54_RS17745	0.79	+0.8
3,883,907	+		LRK54_RS17745	0.79	-1.2
3,883,907	+		LRK54_RS17745	0.79	-1.0
3,883,907	+		LRK54_RS17745	0.79	-0.2
3,883,907	+		LRK54_RS17745	0.79	+0.1
3,883,907	+		LRK54_RS17745	0.79	-0.4
3,883,907	+		LRK54_RS17745	0.79	-0.6
3,883,908	-		LRK54_RS17745	0.79	-0.2
3,883,908	-		LRK54_RS17745	0.79	+0.4
3,883,908	-		LRK54_RS17745	0.79	+0.9
3,883,908	-		LRK54_RS17745	0.79	+1.4
3,883,908	-		LRK54_RS17745	0.79	-0.6
3,883,908	-		LRK54_RS17745	0.79	+1.4
3,883,911	+		LRK54_RS17745	0.80	+1.4
3,883,949	+				-0.6
3,883,949	+				+2.4
3,883,950	-				+0.4
3,883,950	-				+0.4
3,883,950	-				-1.2
3,883,950	-				+0.4
3,883,998	+				-0.4
3,884,108	-				+0.4
3,884,123	+				-1.2
3,884,123	+				+0.8
3,884,124	-				+1.4
3,884,164	+				-1.0
3,884,164	+				-1.0
3,884,165	-				+2.4
3,884,165	-				+0.6
3,884,165	-				-1.8
3,884,165	-				+1.4
3,884,186	+				+0.0
3,884,274	+				+1.4
3,884,274	+				+0.4
3,884,274	+				-0.2
3,884,274	+				+2.4
3,884,274	+				-0.6
3,884,274	+				-0.6
3,884,274	+				+1.4
3,884,274	+				+3.7
3,884,274	+				+0.4
3,884,274	+				-1.6
3,884,275	-				+1.4
3,884,275	-				+0.4
3,884,275	-				-0.6
3,884,275	-				+0.8
3,884,288	+				+0.4
3,884,289	-				+0.4
3,884,309	+				-0.2
3,884,309	+				+1.4
3,884,309	+				+1.4
3,884,310	-				-1.6
3,884,310	-				-0.6
3,884,310	-				+0.4
3,884,448	+		LRK54_RS17750	0.51	-1.8
3,884,448	+		LRK54_RS17750	0.51	+1.4
3,884,448	+		LRK54_RS17750	0.51	+0.6
3,884,449	-		LRK54_RS17750	0.52	-1.0
3,884,504	+		LRK54_RS17750	0.72	+0.4
3,884,541	+		LRK54_RS17750	0.85	-0.2
3,884,541	+		LRK54_RS17750	0.85	-0.1
3,884,541	+		LRK54_RS17750	0.85	+1.4
3,884,541	+		LRK54_RS17750	0.85	+2.4
3,884,541	+		LRK54_RS17750	0.85	+1.4
3,884,541	+		LRK54_RS17750	0.85	-0.6
3,884,541	+		LRK54_RS17750	0.85	-0.8
3,884,542	-		LRK54_RS17750	0.86	-0.6
3,884,542	-		LRK54_RS17750	0.86	+1.4
3,884,542	-		LRK54_RS17750	0.86	-0.6
3,884,542	-		LRK54_RS17750	0.86	+0.4
3,884,542	-		LRK54_RS17750	0.86	-1.8
3,884,542	-		LRK54_RS17750	0.86	+0.4
3,884,542	-		LRK54_RS17750	0.86	-0.2
3,884,576	+				+0.8
3,884,576	+				-0.1
3,884,576	+				+1.9
3,884,576	+				-0.6
3,884,576	+				-0.2
3,884,576	+				+2.4
3,884,576	+				-0.2
3,884,577	-				+1.4
3,884,577	-				-0.2
3,884,577	-				-0.4
3,884,577	-				+1.4
3,884,577	-				+1.4
3,884,577	-				+0.1
3,884,577	-				+0.6
3,884,577	-				-1.8
3,884,577	-				-1.6
3,884,577	-				+0.4
3,884,577	-				+1.4
3,884,577	-				+1.4
3,884,577	-				-0.1
3,884,584	+				+0.4
3,884,584	+				+1.4
3,884,584	+				+0.2
3,884,584	+				+0.4
3,884,584	+				+1.4
3,884,584	+				+1.4
3,884,585	-				-0.2
3,884,585	-				-0.2
3,884,585	-				-0.4
3,884,623	+				+1.4
3,884,623	+				+0.8
3,884,623	+				+0.4
3,884,623	+				+0.6
3,884,623	+				-1.4
3,884,623	+				+1.4
3,884,623	+				+1.4
3,884,623	+				-2.5
3,884,624	-				+0.0
3,884,624	-				+0.4
3,884,624	-				+0.4
3,884,624	-				+2.4
3,884,624	-				+1.4
3,884,624	-				+1.4
3,884,648	+				+1.4
3,884,648	+				-0.6
3,884,648	+				-1.3
3,884,648	+				+2.7
3,884,648	+				-0.2
3,884,648	+				+0.4
3,884,648	+				+1.9
3,884,648	+				-1.2
3,884,648	+				-1.0
3,884,648	+				+2.4
3,884,648	+				+0.4
3,884,648	+				+0.4
3,884,648	+				+1.4
3,884,648	+				+0.4
3,884,648	+				-0.3
3,884,648	+				-2.3
3,884,649	-				-0.6
3,884,649	-				-0.6
3,884,649	-				+1.4
3,884,649	-				+0.4
3,884,649	-				-0.8
3,884,649	-				+2.4
3,884,671	+				+0.4
3,884,672	-				-0.2
3,884,751	+				-0.2
3,884,751	+				+1.4
3,884,755	+				-0.6
3,884,755	+				-1.4
3,884,755	+				-0.6
3,884,756	-				-1.1
3,884,756	-				+0.4
3,884,776	+				-0.6
3,884,776	+				+1.4
3,884,776	+				+1.4
3,884,776	+				+1.4
3,884,776	+				+1.4
3,884,777	-				+2.9
3,884,777	-				-1.6
3,884,777	-				-1.1
3,884,801	+				-0.6
3,884,801	+				-0.2
3,884,801	+				+1.4
3,884,801	+				+1.4
3,884,801	+				-0.2
3,884,801	+				-0.2
3,884,801	+				-1.6
3,884,801	+				+0.1
3,884,802	-				-0.2
3,884,802	-				-1.4
3,884,802	-				+1.4
3,884,802	-				-0.2
3,884,802	-				-1.6
3,884,802	-				-0.6
3,884,802	-				+2.4
3,884,802	-				+0.6
3,884,802	-				-0.6
3,884,805	+				+0.4
3,884,805	+				+0.4
3,884,805	+				-0.8
3,884,805	+				-0.4
3,884,805	+				+0.4
3,884,805	+				+0.8
3,884,805	+				+0.8
3,884,806	-				-0.6
3,884,806	-				+0.4
3,884,806	-				-1.0
3,884,806	-				-0.1
3,884,806	-				-1.4
3,884,806	-				-0.2
3,884,835	+				+0.4
3,884,835	+				+0.0
3,884,835	+				+1.4
3,884,835	+				-2.3
3,884,836	-				-0.8
3,884,836	-				-0.5
3,884,836	-				-2.4
3,884,836	-				-1.3
3,884,836	-				-0.1
3,884,836	-				+0.4
3,884,836	-				+0.2
3,884,836	-				-1.8
3,884,836	-				-0.6
3,884,856	+				-1.2
3,884,856	+				-0.7
3,884,856	+				+1.4
3,884,856	+				-0.8
3,884,856	+				-0.6
3,884,857	-				-0.8
3,884,857	-				+2.4
3,884,857	-				-2.5
3,884,857	-				+0.4
3,884,857	-				-1.2
3,884,857	-				-1.6
3,884,857	-				+0.4
3,884,857	-				-0.8
3,884,857	-				-1.0
3,884,918	+				-1.6
3,884,918	+				-1.4
3,884,918	+				+0.4
3,884,919	-				-0.6
3,884,919	-				-0.2
3,884,919	-				-1.0
3,884,919	-				+0.4
3,884,919	-				+1.4
3,884,919	-				+0.6
3,884,919	-				+1.4