Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17025

Experiment: 3B-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3B-T1
3,722,071	+				-0.3
3,722,071	+				-1.2
3,722,071	+				-0.3
3,722,071	+				-0.7
3,722,071	+				+1.3
3,722,071	+				+0.3
3,722,071	+				+1.3
3,722,071	+				-0.3
3,722,071	+				+1.3
3,722,071	+				-0.5
3,722,071	+				+0.3
3,722,071	+				-0.7
3,722,071	+				+0.3
3,722,071	+				+0.9
3,722,071	+				-0.7
3,722,071	+				-0.3
3,722,071	+				+1.1
3,722,071	+				+0.6
3,722,071	+				-0.2
3,722,071	+				+1.3
3,722,071	+				-1.2
3,722,071	+				+1.3
3,722,071	+				-1.0
3,722,071	-				-0.7
3,722,072	-				-1.2
3,722,072	-				+1.3
3,722,072	-				-0.5
3,722,072	-				+1.3
3,722,072	-				-0.7
3,722,072	-				-2.6
3,722,072	-				-1.3
3,722,072	-				+0.3
3,722,072	-				+1.3
3,722,072	-				+0.3
3,722,072	-				+0.0
3,722,072	-				+0.3
3,722,072	-				-0.7
3,722,072	-				-1.5
3,722,072	-				-0.5
3,722,072	-				-0.7
3,722,072	-				-0.3
3,722,072	-				+0.3
3,722,072	-				-0.3
3,722,072	-				+0.3
3,722,072	-				+0.9
3,722,123	-		LRK54_RS17020	0.14	+0.7
3,722,123	-		LRK54_RS17020	0.14	+2.9
3,722,230	+		LRK54_RS17020	0.28	+0.3
3,722,230	+		LRK54_RS17020	0.28	-1.2
3,722,230	+		LRK54_RS17020	0.28	+2.9
3,722,230	+		LRK54_RS17020	0.28	-0.7
3,722,230	+		LRK54_RS17020	0.28	+1.3
3,722,230	+		LRK54_RS17020	0.28	-1.7
3,722,230	+		LRK54_RS17020	0.28	-0.3
3,722,230	+		LRK54_RS17020	0.28	-0.7
3,722,231	-		LRK54_RS17020	0.28	+0.3
3,722,231	-		LRK54_RS17020	0.28	-0.7
3,722,231	-		LRK54_RS17020	0.28	-0.7
3,722,356	+		LRK54_RS17020	0.45	+0.3
3,722,356	+		LRK54_RS17020	0.45	+1.3
3,722,356	+		LRK54_RS17020	0.45	-1.5
3,722,356	+		LRK54_RS17020	0.45	+1.3
3,722,356	+		LRK54_RS17020	0.45	-2.0
3,722,356	+		LRK54_RS17020	0.45	+0.7
3,722,356	+		LRK54_RS17020	0.45	+1.3
3,722,356	+		LRK54_RS17020	0.45	+0.7
3,722,357	-		LRK54_RS17020	0.45	+0.3
3,722,357	-		LRK54_RS17020	0.45	+1.3
3,722,357	-		LRK54_RS17020	0.45	+1.3
3,722,357	-		LRK54_RS17020	0.45	-0.3
3,722,357	-		LRK54_RS17020	0.45	-1.7
3,722,357	-		LRK54_RS17020	0.45	+0.3
3,722,380	+		LRK54_RS17020	0.48	+1.3
3,722,380	+		LRK54_RS17020	0.48	-1.3
3,722,380	+		LRK54_RS17020	0.48	-0.3
3,722,380	+		LRK54_RS17020	0.48	+1.3
3,722,380	+		LRK54_RS17020	0.48	-0.9
3,722,380	+		LRK54_RS17020	0.48	+0.3
3,722,380	+		LRK54_RS17020	0.48	+0.3
3,722,380	+		LRK54_RS17020	0.48	-0.3
3,722,380	+		LRK54_RS17020	0.48	+1.3
3,722,380	+		LRK54_RS17020	0.48	-0.4
3,722,381	-		LRK54_RS17020	0.48	+0.3
3,722,381	-		LRK54_RS17020	0.48	-1.2
3,722,381	-		LRK54_RS17020	0.48	+1.3
3,722,381	-		LRK54_RS17020	0.48	-1.6
3,722,381	-		LRK54_RS17020	0.48	-0.3
3,722,381	-		LRK54_RS17020	0.48	-0.0
3,722,381	-		LRK54_RS17020	0.48	+0.7
3,722,381	-		LRK54_RS17020	0.48	+0.1
3,722,381	-		LRK54_RS17020	0.48	+0.2
3,722,381	-		LRK54_RS17020	0.48	-0.8
3,722,381	-		LRK54_RS17020	0.48	-1.0
3,722,381	-		LRK54_RS17020	0.48	-1.0
3,722,381	-		LRK54_RS17020	0.48	+0.3
3,722,431	+		LRK54_RS17020	0.55	-0.3
3,722,431	+		LRK54_RS17020	0.55	-1.0
3,722,431	+		LRK54_RS17020	0.55	-1.4
3,722,431	+		LRK54_RS17020	0.55	-0.1
3,722,431	+		LRK54_RS17020	0.55	-0.3
3,722,431	+		LRK54_RS17020	0.55	+0.3
3,722,431	+		LRK54_RS17020	0.55	-0.6
3,722,431	+		LRK54_RS17020	0.55	-0.3
3,722,432	-		LRK54_RS17020	0.55	+1.3
3,722,432	-		LRK54_RS17020	0.55	-1.8
3,722,432	-		LRK54_RS17020	0.55	+0.3
3,722,432	-		LRK54_RS17020	0.55	-0.6
3,722,432	-		LRK54_RS17020	0.55	-1.0
3,722,432	-		LRK54_RS17020	0.55	-0.7
3,722,506	+		LRK54_RS17020	0.65	+1.7
3,722,506	+		LRK54_RS17020	0.65	+0.9
3,722,506	+		LRK54_RS17020	0.65	+1.3
3,722,506	+		LRK54_RS17020	0.65	+1.3
3,722,506	+		LRK54_RS17020	0.65	+1.3
3,722,506	+		LRK54_RS17020	0.65	+0.3
3,722,506	+		LRK54_RS17020	0.65	-0.7
3,722,506	+		LRK54_RS17020	0.65	-1.5
3,722,507	-		LRK54_RS17020	0.65	+1.3
3,722,507	-		LRK54_RS17020	0.65	-1.0
3,722,507	-		LRK54_RS17020	0.65	+1.3
3,722,507	-		LRK54_RS17020	0.65	+1.3
3,722,507	-		LRK54_RS17020	0.65	+0.7
3,722,507	-		LRK54_RS17020	0.65	-0.7
3,722,507	-		LRK54_RS17020	0.65	+0.7
3,722,507	-		LRK54_RS17020	0.65	+0.3
3,722,507	-		LRK54_RS17020	0.65	+0.3
3,722,507	-		LRK54_RS17020	0.65	+1.3
3,722,635	+		LRK54_RS17020	0.81	-0.1
3,722,635	+		LRK54_RS17020	0.81	-0.5
3,722,635	+		LRK54_RS17020	0.81	-1.5
3,722,635	+		LRK54_RS17020	0.81	+0.7
3,722,635	+		LRK54_RS17020	0.81	-2.3
3,722,635	+		LRK54_RS17020	0.81	-1.9
3,722,635	+		LRK54_RS17020	0.81	-1.5
3,722,635	+		LRK54_RS17020	0.81	-0.9
3,722,635	+		LRK54_RS17020	0.81	-0.7
3,722,636	-		LRK54_RS17020	0.82	+0.7
3,722,636	-		LRK54_RS17020	0.82	-0.9
3,722,636	-		LRK54_RS17020	0.82	-0.0
3,722,636	-		LRK54_RS17020	0.82	-1.5
3,722,636	-		LRK54_RS17020	0.82	+1.3
3,722,636	-		LRK54_RS17020	0.82	+0.7
3,722,636	-		LRK54_RS17020	0.82	+0.4
3,722,636	-		LRK54_RS17020	0.82	+1.3
3,722,636	-		LRK54_RS17020	0.82	-1.9
3,722,834	+				-0.4
3,722,834	+				-1.0
3,722,834	+				-0.3
3,722,834	+				-1.3
3,722,834	+				-1.7
3,722,834	+				+1.3
3,722,834	+				-1.8
3,722,834	+				+1.3
3,722,834	+				-0.4
3,722,834	+				-0.7
3,722,834	+				-0.3
3,722,834	+				-0.3
3,722,834	+				-0.0
3,722,834	+				-0.3
3,722,834	+				+0.3
3,722,834	+				-0.7
3,722,834	+				-0.1
3,722,834	+				-1.7
3,722,834	+				-0.7
3,722,834	+				-0.7
3,722,834	+				+0.6
3,722,834	+				+2.3
3,722,834	+				+0.7
3,722,834	+				+0.9
3,722,834	+				+1.3
3,722,834	+				-1.0
3,722,834	+				-0.9
3,722,834	+				+0.7
3,722,834	+				-0.3
3,722,834	+				-1.2
3,722,834	+				-1.0
3,722,834	+				+0.3
3,722,834	+				-0.3
3,722,834	+				+0.7
3,722,834	+				-0.3
3,722,834	+				-0.3
3,722,834	+				+1.3
3,722,834	+				+1.9
3,722,834	+				-0.6
3,722,834	+				+0.7
3,722,834	+				-1.0
3,722,834	+				+1.3
3,722,834	+				+1.3
3,722,834	+				-0.3
3,722,835	-				+0.3
3,722,835	-				+1.3
3,722,835	-				+0.3
3,722,835	-				+0.9
3,722,835	-				-1.4
3,722,835	-				-0.3
3,722,835	-				-0.2
3,722,835	-				-0.3
3,722,835	-				-0.1
3,722,835	-				-0.3
3,722,835	-				+2.3
3,722,835	-				+2.3
3,722,835	-				-0.3
3,722,835	-				+0.3
3,722,835	-				-1.1
3,722,835	-				-0.8
3,722,835	-				+2.3
3,722,835	-				-0.0
3,722,835	-				-1.9
3,722,835	-				+0.3
3,722,835	-				+0.3
3,722,835	-				+0.6
3,722,835	-				+1.3
3,722,835	-				+0.7
3,722,835	-				-0.0
3,722,835	-				+1.3
3,722,835	-				+1.3
3,722,835	-				-1.0
3,722,835	-				-0.3
3,722,835	-				+0.5
3,722,835	-				-1.2
3,722,835	-				+1.3
3,722,835	-				+0.3
3,722,835	-				-2.2
3,722,835	-				-0.7
3,722,835	-				+0.3
3,722,835	-				-0.7
3,722,835	-				+1.3
3,722,835	-				+1.3
3,722,835	-				-1.0
3,722,835	-				+1.3
3,722,835	-				-1.0
3,722,835	-				-1.0
3,722,835	-				+0.1
3,722,840	+				+1.3
3,722,840	+				+0.6
3,722,840	+				+1.3
3,722,840	+				-1.5
3,722,840	+				-0.3
3,722,840	+				+1.3
3,722,840	+				-0.5
3,722,840	+				-1.2
3,722,840	+				-0.3
3,722,840	+				-1.3
3,722,840	+				+0.3
3,722,840	+				+0.2
3,722,840	+				+0.7
3,722,840	+				+1.3
3,722,840	+				+1.3
3,722,840	+				+0.3
3,722,840	+				+0.3
3,722,840	+				-0.3
3,722,840	+				-0.3
3,722,840	+				+0.3
3,722,840	+				+0.3
3,722,840	+				+0.6
3,722,841	-				+0.3
3,722,841	-				+1.3
3,722,841	-				+0.3
3,722,841	-				+1.3
3,722,841	-				+0.7
3,722,841	-				+1.3
3,722,841	-				-1.5
3,722,841	-				+0.7
3,722,841	-				+0.3
3,722,841	-				+1.3
3,722,841	-				+0.7
3,722,841	-				+1.3
3,722,841	-				+0.7
3,722,841	-				-1.0
3,722,841	-				-0.3
3,722,841	-				+1.3
3,722,841	-				+0.1
3,722,841	-				+0.3
3,722,841	-				-0.9
3,722,841	-				+0.3
3,722,841	-				-0.5
3,722,841	-				-2.3
3,722,841	-				-0.3
3,722,841	-				+0.5
3,722,841	-				-0.7
3,722,841	-				-1.0
3,722,947	+				+0.3
3,722,947	+				-2.2
3,723,084	+		LRK54_RS17025	0.73	-1.6
3,723,158	+				-1.2
3,723,158	+				+0.3
3,723,158	+				+1.3
3,723,158	+				-1.9
3,723,158	+				+1.3
3,723,158	+				-0.0
3,723,158	+				+0.3
3,723,158	+				-0.7
3,723,158	+				-0.7
3,723,158	+				-1.3
3,723,158	+				+0.9
3,723,158	+				-0.7
3,723,159	-				+2.3
3,723,159	-				+2.3
3,723,159	-				+0.3
3,723,159	-				-1.0
3,723,159	-				+0.3
3,723,159	-				-0.0
3,723,159	-				-0.3
3,723,159	-				+1.9
3,723,159	-				+1.3
3,723,159	-				+1.3
3,723,159	-				+0.7
3,723,217	+				-1.9
3,723,217	+				-0.3
3,723,217	+				+0.6
3,723,217	+				-0.0
3,723,217	+				+0.1
3,723,217	+				-1.1
3,723,217	+				+0.3
3,723,218	-				-0.8
3,723,218	-				-0.3
3,723,218	-				-0.3
3,723,218	-				-0.0
3,723,218	-				-0.3
3,723,218	-				-0.7
3,723,218	-				-1.0
3,723,474	+		LRK54_RS17030	0.24	+1.3
3,723,474	+		LRK54_RS17030	0.24	+0.3
3,723,474	+		LRK54_RS17030	0.24	-2.2
3,723,474	+		LRK54_RS17030	0.24	+0.1
3,723,474	+		LRK54_RS17030	0.24	+1.3
3,723,474	+		LRK54_RS17030	0.24	+1.3
3,723,474	+		LRK54_RS17030	0.24	-0.7
3,723,475	-		LRK54_RS17030	0.24	-0.6
3,723,475	-		LRK54_RS17030	0.24	-0.3
3,723,475	-		LRK54_RS17030	0.24	+1.3
3,723,748	+		LRK54_RS17030	0.50	-0.3
3,723,748	+		LRK54_RS17030	0.50	-1.0
3,723,748	+		LRK54_RS17030	0.50	+1.3
3,723,748	+		LRK54_RS17030	0.50	-1.4
3,723,748	+		LRK54_RS17030	0.50	-0.1
3,723,748	+		LRK54_RS17030	0.50	-0.2
3,723,748	+		LRK54_RS17030	0.50	+0.3
3,723,748	+		LRK54_RS17030	0.50	-1.0
3,723,748	+		LRK54_RS17030	0.50	-0.0
3,723,748	+		LRK54_RS17030	0.50	-0.5
3,723,748	+		LRK54_RS17030	0.50	-1.2
3,723,749	-		LRK54_RS17030	0.50	+0.6
3,723,749	-		LRK54_RS17030	0.50	+1.9
3,723,749	-		LRK54_RS17030	0.50	-0.0
3,723,749	-		LRK54_RS17030	0.50	+1.3
3,723,749	-		LRK54_RS17030	0.50	+0.3
3,723,749	-		LRK54_RS17030	0.50	-0.7
3,723,749	-		LRK54_RS17030	0.50	-1.3
3,723,749	-		LRK54_RS17030	0.50	-1.2
3,723,781	+		LRK54_RS17030	0.53	-0.9
3,723,782	-		LRK54_RS17030	0.53	+0.3
3,723,782	-		LRK54_RS17030	0.53	+1.9
3,723,782	-		LRK54_RS17030	0.53	-1.9
3,723,782	-		LRK54_RS17030	0.53	-0.3
3,723,952	+		LRK54_RS17030	0.69	+1.3
3,723,952	+		LRK54_RS17030	0.69	+2.3
3,723,952	+		LRK54_RS17030	0.69	-0.3
3,723,952	+		LRK54_RS17030	0.69	+1.7
3,723,952	+		LRK54_RS17030	0.69	-1.0
3,723,952	+		LRK54_RS17030	0.69	+0.1
3,723,952	+		LRK54_RS17030	0.69	+1.0
3,723,952	+		LRK54_RS17030	0.69	-0.4
3,723,952	+		LRK54_RS17030	0.69	-0.7
3,723,952	+		LRK54_RS17030	0.69	-1.0
3,723,952	+		LRK54_RS17030	0.69	-1.2
3,723,952	+		LRK54_RS17030	0.69	-0.9
3,723,952	+		LRK54_RS17030	0.69	-0.5
3,723,952	+		LRK54_RS17030	0.69	+0.3
3,723,952	+		LRK54_RS17030	0.69	-0.3
3,723,952	+		LRK54_RS17030	0.69	-0.7
3,723,952	+		LRK54_RS17030	0.69	-0.3
3,723,953	-		LRK54_RS17030	0.70	-0.7
3,723,953	-		LRK54_RS17030	0.70	+1.3
3,723,953	-		LRK54_RS17030	0.70	+1.3
3,723,953	-		LRK54_RS17030	0.70	+0.7
3,723,953	-		LRK54_RS17030	0.70	+0.3
3,723,953	-		LRK54_RS17030	0.70	+0.3
3,723,953	-		LRK54_RS17030	0.70	+0.1
3,723,953	-		LRK54_RS17030	0.70	-2.2
3,723,953	-		LRK54_RS17030	0.70	+0.3
3,724,020	+		LRK54_RS17030	0.76	-1.5
3,724,021	-		LRK54_RS17030	0.76	+0.3
3,724,021	-		LRK54_RS17030	0.76	+0.3