Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12080

Experiment: 3B-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3B-T1
2,681,464	+		LRK54_RS12075	0.71	+0.3
2,681,464	+		LRK54_RS12075	0.71	+0.3
2,681,464	+		LRK54_RS12075	0.71	-1.4
2,681,464	+		LRK54_RS12075	0.71	-1.2
2,681,464	+		LRK54_RS12075	0.71	+0.3
2,681,465	-		LRK54_RS12075	0.71	+0.8
2,681,465	-		LRK54_RS12075	0.71	-1.2
2,681,465	-		LRK54_RS12075	0.71	+0.8
2,681,465	-		LRK54_RS12075	0.71	+0.0
2,681,465	-		LRK54_RS12075	0.71	+0.1
2,681,544	-		LRK54_RS12075	0.74	-1.0
2,681,611	+		LRK54_RS12075	0.77	-2.0
2,681,611	+		LRK54_RS12075	0.77	+1.8
2,681,611	+		LRK54_RS12075	0.77	-0.5
2,681,611	+		LRK54_RS12075	0.77	-1.2
2,681,611	+		LRK54_RS12075	0.77	-3.4
2,681,612	-		LRK54_RS12075	0.77	+0.3
2,681,612	-		LRK54_RS12075	0.77	-0.4
2,681,612	-		LRK54_RS12075	0.77	-1.7
2,681,612	-		LRK54_RS12075	0.77	-1.2
2,681,647	+		LRK54_RS12075	0.78	-0.7
2,681,647	+		LRK54_RS12075	0.78	+0.8
2,681,647	+		LRK54_RS12075	0.78	-0.2
2,681,647	+		LRK54_RS12075	0.78	-0.4
2,681,647	+		LRK54_RS12075	0.78	-0.0
2,681,648	-		LRK54_RS12075	0.78	-0.2
2,681,648	-		LRK54_RS12075	0.78	-0.7
2,681,648	-		LRK54_RS12075	0.78	-0.2
2,681,800	+		LRK54_RS12075	0.84	-0.7
2,682,106	+				+0.8
2,682,106	+				+1.8
2,682,106	+				-1.0
2,682,106	+				-1.0
2,682,106	+				-1.0
2,682,107	-				-1.2
2,682,107	-				+0.3
2,682,107	-				+0.8
2,682,107	-				-0.7
2,682,107	-				-0.7
2,682,278	+				-0.2
2,682,278	+				-0.7
2,682,278	+				+1.1
2,682,278	+				-1.8
2,682,279	-				+1.8
2,682,279	-				-0.8
2,682,279	-				-0.0
2,682,304	+				-1.5
2,682,305	-				+0.8
2,682,343	+				-1.0
2,682,344	-				-0.2
2,682,344	-				-1.2
2,682,399	-				+0.8
2,682,425	+				-0.3
2,682,425	+				-1.0
2,682,425	+				-0.7
2,682,425	+				-0.2
2,682,426	-				-0.7
2,682,426	-				+0.8
2,682,426	-				-1.2
2,682,426	-				+0.8
2,682,426	-				-0.5
2,682,426	-				-0.2
2,682,469	+				-0.2
2,682,470	-				+0.8
2,682,470	-				-2.9
2,682,470	-				-0.6
2,682,689	+		LRK54_RS12080	0.24	-1.6
2,682,849	+		LRK54_RS12080	0.36	+1.8
2,682,849	+		LRK54_RS12080	0.36	-3.0
2,682,850	-		LRK54_RS12080	0.36	-1.2
2,682,921	+		LRK54_RS12080	0.42	-0.5
2,682,921	+		LRK54_RS12080	0.42	-0.2
2,682,921	+		LRK54_RS12080	0.42	+0.8
2,682,922	-		LRK54_RS12080	0.42	-1.1
2,682,922	-		LRK54_RS12080	0.42	+0.8
2,682,922	-		LRK54_RS12080	0.42	-0.2
2,682,922	-		LRK54_RS12080	0.42	-0.7
2,682,922	-		LRK54_RS12080	0.42	-0.6
2,682,922	-		LRK54_RS12080	0.42	+1.4
2,682,922	-		LRK54_RS12080	0.42	-1.6
2,683,268	+		LRK54_RS12080	0.70	-1.2
2,683,268	+		LRK54_RS12080	0.70	-0.2
2,683,268	+		LRK54_RS12080	0.70	+0.8
2,683,268	+		LRK54_RS12080	0.70	-0.2
2,683,268	+		LRK54_RS12080	0.70	-1.5
2,683,268	+		LRK54_RS12080	0.70	+0.8
2,683,268	+		LRK54_RS12080	0.70	+0.3
2,683,269	-		LRK54_RS12080	0.70	-1.2
2,683,269	-		LRK54_RS12080	0.70	-0.2
2,683,269	-		LRK54_RS12080	0.70	-0.2
2,683,269	-		LRK54_RS12080	0.70	-1.2
2,683,269	-		LRK54_RS12080	0.70	+1.4
2,683,269	-		LRK54_RS12080	0.70	-1.2
2,683,269	-		LRK54_RS12080	0.70	-1.2
2,683,269	-		LRK54_RS12080	0.70	-0.7
2,683,269	-		LRK54_RS12080	0.70	+0.3
2,683,272	+		LRK54_RS12080	0.70	-0.4
2,683,272	+		LRK54_RS12080	0.70	+0.3
2,683,272	+		LRK54_RS12080	0.70	-1.5
2,683,272	+		LRK54_RS12080	0.70	-1.7
2,683,272	+		LRK54_RS12080	0.70	+0.8
2,683,272	+		LRK54_RS12080	0.70	-0.2
2,683,272	+		LRK54_RS12080	0.70	+0.8
2,683,272	+		LRK54_RS12080	0.70	-0.7
2,683,272	+		LRK54_RS12080	0.70	-1.5
2,683,272	+		LRK54_RS12080	0.70	-1.0
2,683,272	+		LRK54_RS12080	0.70	-1.7
2,683,272	+		LRK54_RS12080	0.70	-0.5
2,683,272	+		LRK54_RS12080	0.70	-0.2
2,683,272	+		LRK54_RS12080	0.70	-0.2
2,683,273	-		LRK54_RS12080	0.70	-0.4
2,683,273	-		LRK54_RS12080	0.70	-2.0
2,683,273	-		LRK54_RS12080	0.70	+0.8
2,683,273	-		LRK54_RS12080	0.70	+0.8
2,683,273	-		LRK54_RS12080	0.70	+0.8
2,683,273	-		LRK54_RS12080	0.70	+1.4
2,683,273	-		LRK54_RS12080	0.70	-1.6
2,683,273	-		LRK54_RS12080	0.70	-0.9
2,683,274	+		LRK54_RS12080	0.70	+0.8
2,683,275	-		LRK54_RS12080	0.70	+0.8
2,683,619	+				-0.4
2,683,619	+				-0.2
2,683,619	+				+0.8
2,683,620	-				+0.3
2,683,623	+				-0.2
2,683,623	+				-0.7
2,683,623	+				-0.2
2,683,623	+				+0.5
2,683,623	+				-0.2
2,683,623	+				+0.8
2,683,623	+				-0.2
2,683,623	+				+1.4
2,683,623	+				-1.7
2,683,624	-				-0.7
2,683,624	-				-1.2
2,683,624	-				+1.8
2,683,624	-				-0.9
2,683,624	-				-0.5
2,683,624	-				-1.8
2,683,809	+		LRK54_RS12085	0.15	-0.4
2,683,809	+		LRK54_RS12085	0.15	+1.8
2,683,809	+		LRK54_RS12085	0.15	-0.4
2,683,809	+		LRK54_RS12085	0.15	+0.8
2,683,809	+		LRK54_RS12085	0.15	-1.5
2,683,810	-		LRK54_RS12085	0.15	+0.8
2,683,810	-		LRK54_RS12085	0.15	+0.8
2,683,810	-		LRK54_RS12085	0.15	-2.2
2,683,896	+		LRK54_RS12085	0.26	-0.7
2,683,896	+		LRK54_RS12085	0.26	-0.5
2,683,896	+		LRK54_RS12085	0.26	-0.2
2,683,896	+		LRK54_RS12085	0.26	+1.8
2,683,897	-		LRK54_RS12085	0.26	+0.8
2,683,897	-		LRK54_RS12085	0.26	+0.8
2,683,897	-		LRK54_RS12085	0.26	+1.3
2,683,897	-		LRK54_RS12085	0.26	-2.3
2,683,897	-		LRK54_RS12085	0.26	+0.8
2,683,897	-		LRK54_RS12085	0.26	-1.2
2,683,897	-		LRK54_RS12085	0.26	+0.8
2,683,897	-		LRK54_RS12085	0.26	-0.7
2,683,897	-		LRK54_RS12085	0.26	-1.5
2,683,897	-		LRK54_RS12085	0.26	-0.9
2,683,897	-		LRK54_RS12085	0.26	-0.2
2,684,040	+		LRK54_RS12085	0.45	-1.0
2,684,040	+		LRK54_RS12085	0.45	-0.7
2,684,040	+		LRK54_RS12085	0.45	+0.3
2,684,041	-		LRK54_RS12085	0.45	-0.2
2,684,189	+		LRK54_RS12085	0.65	-0.8
2,684,219	+		LRK54_RS12085	0.68	-0.2
2,684,219	+		LRK54_RS12085	0.68	-0.3
2,684,219	+		LRK54_RS12085	0.68	-1.2
2,684,385	+				-0.2
2,684,385	+				+1.3
2,684,385	+				-1.9
2,684,385	+				-0.7
2,684,385	+				+0.8
2,684,385	+				+0.4
2,684,385	+				-1.2
2,684,386	-				-2.0
2,684,386	-				-2.0
2,684,386	-				-0.2
2,684,386	-				+0.8
2,684,386	-				-0.2
2,684,635	-				-1.6
2,684,635	-				-0.4
2,684,635	-				-0.7