Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07180

Experiment: 3B-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3B-T1
1,541,728	+		LRK54_RS07170	0.78	-1.7
1,541,728	+		LRK54_RS07170	0.78	+0.1
1,541,728	+		LRK54_RS07170	0.78	+0.8
1,541,728	+		LRK54_RS07170	0.78	+0.8
1,541,728	+		LRK54_RS07170	0.78	-2.7
1,541,728	+		LRK54_RS07170	0.78	-1.4
1,541,729	-		LRK54_RS07170	0.78	+0.8
1,541,729	-		LRK54_RS07170	0.78	+0.8
1,541,840	+		LRK54_RS07170	0.83	-1.5
1,541,840	+		LRK54_RS07170	0.83	-1.3
1,541,840	+		LRK54_RS07170	0.83	+1.7
1,541,841	-		LRK54_RS07170	0.83	-1.1
1,541,841	-		LRK54_RS07170	0.83	-1.7
1,542,005	-				-0.3
1,542,064	+				-1.6
1,542,064	+				-0.8
1,542,064	+				+0.7
1,542,064	+				-1.4
1,542,065	-				+0.7
1,542,065	-				+0.4
1,542,065	-				-1.5
1,542,226	+				+0.1
1,542,226	+				-0.3
1,542,226	+				+0.3
1,542,226	+				+0.7
1,542,227	-				-1.3
1,542,227	-				+0.7
1,542,227	-				-1.4
1,542,227	-				-0.3
1,542,227	-				+1.5
1,542,227	-				-0.5
1,542,265	+				-0.4
1,542,265	+				-1.1
1,542,265	+				-1.8
1,542,266	-				+1.7
1,542,266	-				+0.7
1,542,359	+		LRK54_RS07175	0.14	-0.7
1,542,359	+		LRK54_RS07175	0.14	-1.4
1,542,359	+		LRK54_RS07175	0.14	-0.6
1,542,359	+		LRK54_RS07175	0.14	-1.2
1,542,359	+		LRK54_RS07175	0.14	+0.7
1,542,359	+		LRK54_RS07175	0.14	+1.6
1,542,359	+		LRK54_RS07175	0.14	-1.3
1,542,359	+		LRK54_RS07175	0.14	-1.4
1,542,359	+		LRK54_RS07175	0.14	-0.4
1,542,359	+		LRK54_RS07175	0.14	+0.1
1,542,360	-		LRK54_RS07175	0.14	-0.3
1,542,360	-		LRK54_RS07175	0.14	-0.2
1,542,360	-		LRK54_RS07175	0.14	+0.7
1,542,360	-		LRK54_RS07175	0.14	-1.0
1,542,360	-		LRK54_RS07175	0.14	+0.1
1,542,360	-		LRK54_RS07175	0.14	+0.7
1,542,360	-		LRK54_RS07175	0.14	+0.3
1,542,360	-		LRK54_RS07175	0.14	-0.6
1,542,360	-		LRK54_RS07175	0.14	+0.4
1,542,360	-		LRK54_RS07175	0.14	-1.0
1,542,360	-		LRK54_RS07175	0.14	-0.7
1,542,360	-		LRK54_RS07175	0.14	-0.3
1,542,360	-		LRK54_RS07175	0.14	-1.6
1,542,360	-		LRK54_RS07175	0.14	-2.3
1,542,360	-		LRK54_RS07175	0.14	-0.6
1,542,360	-		LRK54_RS07175	0.14	+0.0
1,542,360	-		LRK54_RS07175	0.14	-0.2
1,542,638	+				+1.7
1,542,638	+				+0.7
1,542,638	+				+0.7
1,542,638	+				-0.3
1,542,638	+				-1.8
1,542,638	+				-0.3
1,542,638	+				+1.3
1,542,638	+				-1.3
1,542,638	+				-0.8
1,542,638	+				-0.4
1,542,638	+				-1.6
1,542,638	+				+1.2
1,542,638	+				-0.3
1,542,638	+				+0.0
1,542,638	+				-0.3
1,542,638	+				-0.8
1,542,638	+				-0.4
1,542,638	+				+1.7
1,542,638	+				-0.8
1,542,638	+				+0.0
1,542,638	+				-0.3
1,542,638	+				+0.7
1,542,638	+				-1.2
1,542,638	+				-1.5
1,542,638	+				-1.4
1,542,638	+				-0.5
1,542,638	+				-0.0
1,542,638	+				-2.7
1,542,638	+				-1.1
1,542,638	+				-1.0
1,542,638	+				-1.0
1,542,638	+				+0.3
1,542,638	+				-1.8
1,542,638	+				-1.6
1,542,639	-				-0.8
1,542,639	-				-0.5
1,542,639	-				-0.8
1,542,639	-				-0.3
1,542,639	-				-1.1
1,542,639	-				-0.3
1,542,639	-				-0.9
1,542,639	-				-1.6
1,542,639	-				+0.7
1,542,639	-				-0.8
1,542,639	-				+0.3
1,542,639	-				+0.7
1,542,639	-				-0.7
1,542,639	-				-0.5
1,542,639	-				+0.3
1,542,639	-				+0.7
1,542,639	-				-0.7
1,542,639	-				-1.6
1,542,639	-				-1.9
1,542,639	-				+0.7
1,542,639	-				-0.8
1,542,639	-				+0.7
1,542,639	-				-1.3
1,542,639	-				+0.1
1,542,639	-				+0.7
1,542,639	-				-0.6
1,542,639	-				-0.3
1,542,639	-				-1.0
1,542,639	-				-1.3
1,542,639	-				-1.3
1,542,639	-				-0.3
1,542,639	-				+1.7
1,542,639	-				-1.9
1,542,639	-				-0.9
1,542,639	-				-0.5
1,542,639	-				-1.1
1,542,639	-				+0.7
1,542,639	-				-0.8
1,542,639	-				+0.7
1,542,639	-				-0.6
1,542,639	-				-1.2
1,542,641	+				+0.7
1,542,641	+				-0.7
1,542,641	+				-0.1
1,542,641	+				-0.8
1,542,641	+				-0.3
1,542,641	+				+0.7
1,542,641	+				-1.0
1,542,641	+				-1.3
1,542,641	+				+0.7
1,542,641	+				-1.6
1,542,641	+				+0.7
1,542,641	+				-0.8
1,542,641	+				+0.7
1,542,641	+				-0.3
1,542,641	+				-0.8
1,542,641	+				+0.7
1,542,642	-				-1.8
1,542,642	-				-1.4
1,542,642	-				+1.7
1,542,642	-				-0.8
1,542,642	-				-0.4
1,542,642	-				-0.3
1,542,642	-				+1.7
1,542,642	-				-0.8
1,542,642	-				+0.3
1,542,642	-				+0.0
1,542,642	-				-0.3
1,542,681	+				-0.1
1,542,681	+				-1.3
1,542,681	+				+0.7
1,542,681	+				+0.7
1,542,681	+				+0.0
1,542,681	+				-0.1
1,542,681	+				-0.3
1,542,681	+				+0.7
1,542,681	+				-1.3
1,542,681	+				+0.7
1,542,681	+				+0.2
1,542,681	+				+0.7
1,542,681	+				+1.5
1,542,681	+				-0.3
1,542,681	+				+0.7
1,542,681	+				-0.7
1,542,681	+				-0.3
1,542,681	+				+1.7
1,542,681	+				-0.3
1,542,681	+				-1.6
1,542,681	+				-1.7
1,542,681	+				-0.3
1,542,681	+				-1.3
1,542,681	+				+0.7
1,542,681	+				-0.8
1,542,681	+				-1.1
1,542,681	+				-0.8
1,542,681	+				-1.1
1,542,681	+				-0.3
1,542,681	+				+0.7
1,542,681	+				+0.2
1,542,682	-				-0.5
1,542,682	-				-0.9
1,542,682	-				-0.4
1,542,682	-				-0.8
1,542,682	-				-1.1
1,542,682	-				-1.3
1,542,682	-				-0.8
1,542,682	-				+0.3
1,542,682	-				-1.7
1,542,682	-				-0.7
1,542,682	-				-1.6
1,542,682	-				-0.8
1,542,682	-				-0.8
1,542,682	-				-1.5
1,542,682	-				-0.7
1,542,682	-				-1.0
1,542,682	-				-0.3
1,542,682	-				+0.7
1,542,682	-				-1.6
1,542,682	-				+0.7
1,542,682	-				+0.2
1,542,685	+				-1.3
1,542,685	+				+0.3
1,542,685	+				+0.5
1,542,685	+				-1.1
1,542,685	+				-0.4
1,542,685	+				+0.4
1,542,685	+				+0.7
1,542,685	+				-0.8
1,542,685	+				-2.3
1,542,685	+				-0.3
1,542,685	+				-0.8
1,542,686	-				+0.7
1,542,686	-				-0.7
1,542,686	-				-0.8
1,542,686	-				+0.0
1,542,686	-				-0.3
1,542,686	-				+0.2
1,542,726	-				+1.7
1,542,742	-				+1.1
1,542,742	-				+0.2
1,543,182	+		LRK54_RS07180	0.70	-0.4
1,543,182	+		LRK54_RS07180	0.70	-2.3
1,543,183	-		LRK54_RS07180	0.70	-2.7
1,543,183	-		LRK54_RS07180	0.70	+0.1
1,543,423	+				+0.7
1,543,423	+				-1.2
1,543,423	+				-0.3
1,543,423	+				+0.9
1,543,423	+				-1.5
1,543,423	+				+2.1
1,543,423	+				+0.3
1,543,423	+				-0.0
1,543,423	+				+1.3
1,543,423	+				+0.7
1,543,423	+				-0.3
1,543,423	+				+1.7
1,543,423	+				-0.6
1,543,423	+				+0.2
1,543,423	+				-1.2
1,543,423	+				+0.7
1,543,424	-				-0.2
1,543,424	-				-0.4
1,543,424	-				-0.3
1,543,424	-				+1.1
1,543,424	-				-1.6
1,543,424	-				-2.3
1,543,424	-				-1.6
1,543,424	-				-0.9
1,543,424	-				+0.7
1,543,424	-				-1.3
1,543,424	-				-0.5
1,543,424	-				-0.1
1,543,424	-				-0.1
1,543,424	-				-1.6
1,543,424	-				+0.0
1,543,424	-				-0.8
1,543,424	-				-0.4
1,543,504	+				+1.3
1,543,504	+				-0.3
1,543,504	+				-0.5
1,543,504	+				-0.8
1,543,504	+				-0.6
1,543,504	+				-1.6
1,543,504	+				+0.4
1,543,504	+				-2.4
1,543,504	+				-0.6
1,543,504	+				-0.8
1,543,504	+				+1.7
1,543,504	+				+0.3
1,543,504	+				+0.7
1,543,504	+				+0.1
1,543,504	+				-1.3
1,543,504	+				+0.0
1,543,504	+				-0.3
1,543,504	+				+0.7
1,543,504	+				+0.2
1,543,504	+				+1.0
1,543,504	+				+0.2
1,543,505	-				-0.8
1,543,505	-				+0.6
1,543,505	-				-0.6
1,543,505	-				-2.4
1,543,505	-				-0.8
1,543,505	-				-1.3
1,543,505	-				-1.3
1,543,505	-				+1.2
1,543,505	-				-0.1
1,543,505	-				-0.6
1,543,505	-				-0.4
1,543,505	-				-0.8
1,543,505	-				+0.7
1,543,505	-				-0.3
1,543,505	-				+1.0
1,543,505	-				+2.3
1,543,505	-				+0.7
1,543,505	-				-0.9
1,543,505	-				+0.0
1,543,505	-				-0.8
1,543,506	-				-0.1
1,543,511	+				-0.2
1,543,511	+				-0.3
1,543,511	+				-0.5
1,543,511	+				-0.3
1,543,511	+				+0.5
1,543,511	+				-0.1
1,543,512	-				-0.8
1,543,512	-				-0.3
1,543,512	-				+0.7
1,543,512	-				+0.3
1,543,512	-				+0.3
1,543,512	-				+0.7
1,543,512	-				-0.9
1,543,512	-				-0.7
1,543,512	-				-1.3
1,543,512	-				-1.1
1,543,528	+				-1.3
1,543,528	+				-0.3
1,543,528	+				-0.6
1,543,528	+				-0.7
1,543,528	+				-0.2
1,543,528	+				-1.0
1,543,529	-				-1.7
1,543,529	-				-2.8
1,543,529	-				-1.1
1,543,529	-				+0.7
1,543,539	+				-0.8
1,543,540	-				+1.7
1,543,540	-				-0.2
1,543,561	+				-1.2
1,543,562	-				+0.5
1,543,562	-				-0.3
1,543,562	-				-1.4
1,543,587	+				+0.4
1,543,587	+				-0.1
1,543,587	+				-0.4
1,543,587	+				-1.6
1,543,587	+				+0.3
1,543,587	+				-2.2
1,543,587	+				-1.6
1,543,588	-				+0.7
1,543,588	-				-0.3
1,543,588	-				-1.3
1,543,588	-				-0.8
1,543,588	-				-0.6
1,543,588	-				+0.7
1,543,588	-				-1.6
1,543,669	+				-1.8
1,543,669	+				-1.9
1,543,669	+				-1.0
1,543,669	+				+0.7
1,543,669	+				+0.7
1,543,669	+				-0.8
1,543,669	+				+0.7
1,543,669	+				-1.3
1,543,669	+				-1.4
1,543,669	+				+0.7
1,543,670	-				-0.8
1,543,670	-				-1.3
1,543,670	-				-1.3
1,543,670	-				-1.1
1,543,670	-				-0.3
1,543,670	-				+0.7
1,543,670	-				-0.8
1,543,670	-				+0.7
1,543,710	+				+0.7
1,543,710	+				-1.3
1,543,710	+				+0.0
1,543,710	+				-0.7
1,543,710	+				-0.3
1,543,710	+				+1.3
1,543,710	+				-0.6
1,543,710	+				+0.7
1,543,710	+				-1.0
1,543,711	-				-1.2
1,543,711	-				-1.3
1,543,711	-				+0.7
1,543,711	-				+1.7
1,543,711	-				-1.8
1,543,719	+				-0.1
1,543,719	+				+0.5
1,543,719	+				+0.2
1,543,719	+				-0.8
1,543,719	+				-0.8
1,543,719	+				-0.3
1,543,719	+				-0.6
1,543,719	+				-0.8
1,543,719	+				-1.3
1,543,719	+				-0.5
1,543,719	+				+0.7
1,543,719	+				-0.3
1,543,719	+				+0.0
1,543,719	+				-1.9
1,543,719	+				-0.8
1,543,719	+				-0.5
1,543,719	+				+0.7
1,543,720	-				+0.2
1,543,720	-				-2.2
1,543,720	-				-0.3
1,543,720	-				-0.5
1,543,720	-				+0.7
1,543,720	-				+0.2
1,543,720	-				-0.5
1,543,720	-				+0.2
1,543,720	-				+1.3
1,543,720	-				+0.3
1,543,720	-				-0.6
1,543,720	-				+1.5
1,543,720	-				-0.3
1,543,720	-				-0.3
1,543,720	-				-1.3
1,543,720	-				-1.8
1,544,040	+		LRK54_RS07185	0.49	-0.3
1,544,040	+		LRK54_RS07185	0.49	-0.8
1,544,040	+		LRK54_RS07185	0.49	+0.0
1,544,040	+		LRK54_RS07185	0.49	+0.3
1,544,041	-		LRK54_RS07185	0.49	+0.2
1,544,041	-		LRK54_RS07185	0.49	-1.4
1,544,088	+		LRK54_RS07185	0.56	+0.7
1,544,088	+		LRK54_RS07185	0.56	-0.3
1,544,088	+		LRK54_RS07185	0.56	-1.1
1,544,088	+		LRK54_RS07185	0.56	+0.0
1,544,088	+		LRK54_RS07185	0.56	+0.7
1,544,088	+		LRK54_RS07185	0.56	-1.3
1,544,088	+		LRK54_RS07185	0.56	-1.1
1,544,088	+		LRK54_RS07185	0.56	+0.5
1,544,088	+		LRK54_RS07185	0.56	-2.1
1,544,089	-		LRK54_RS07185	0.57	+0.7
1,544,089	-		LRK54_RS07185	0.57	+0.3
1,544,089	-		LRK54_RS07185	0.57	-1.6
1,544,089	-		LRK54_RS07185	0.57	-1.8
1,544,089	-		LRK54_RS07185	0.57	-0.8
1,544,089	-		LRK54_RS07185	0.57	-1.2
1,544,089	-		LRK54_RS07185	0.57	-0.5
1,544,127	+		LRK54_RS07185	0.62	+1.0
1,544,127	+		LRK54_RS07185	0.62	+0.2
1,544,127	+		LRK54_RS07185	0.62	-1.3
1,544,127	+		LRK54_RS07185	0.62	-1.6
1,544,128	-		LRK54_RS07185	0.62	-0.4
1,544,128	-		LRK54_RS07185	0.62	+0.7
1,544,128	-		LRK54_RS07185	0.62	-0.7
1,544,128	-		LRK54_RS07185	0.62	-0.8
1,544,128	-		LRK54_RS07185	0.62	-0.3