Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18135

Experiment: 2B-T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2B-T2
3,956,061	+		LRK54_RS18130	0.36	+1.2
3,956,061	+		LRK54_RS18130	0.36	-0.8
3,956,061	+		LRK54_RS18130	0.36	-0.1
3,956,061	+		LRK54_RS18130	0.36	-1.2
3,956,062	-		LRK54_RS18130	0.36	+0.2
3,956,062	-		LRK54_RS18130	0.36	+0.2
3,956,139	+		LRK54_RS18130	0.43	+1.6
3,956,140	-		LRK54_RS18130	0.43	-0.2
3,956,140	-		LRK54_RS18130	0.43	-1.6
3,956,343	+		LRK54_RS18130	0.60	-2.0
3,956,343	+		LRK54_RS18130	0.60	+0.2
3,956,343	+		LRK54_RS18130	0.60	-0.6
3,956,343	+		LRK54_RS18130	0.60	+0.9
3,956,343	+		LRK54_RS18130	0.60	-0.4
3,956,343	+		LRK54_RS18130	0.60	-0.8
3,956,343	+		LRK54_RS18130	0.60	-0.8
3,956,343	+		LRK54_RS18130	0.60	+0.2
3,956,343	+		LRK54_RS18130	0.60	+1.2
3,956,343	+		LRK54_RS18130	0.60	-0.1
3,956,343	+		LRK54_RS18130	0.60	+0.2
3,956,343	+		LRK54_RS18130	0.60	-1.2
3,956,343	+		LRK54_RS18130	0.60	+1.2
3,956,343	+		LRK54_RS18130	0.60	+2.7
3,956,343	+		LRK54_RS18130	0.60	+1.2
3,956,343	+		LRK54_RS18130	0.60	+0.2
3,956,344	-		LRK54_RS18130	0.60	+1.2
3,956,344	-		LRK54_RS18130	0.60	-0.2
3,956,344	-		LRK54_RS18130	0.60	+0.2
3,956,344	-		LRK54_RS18130	0.60	-0.4
3,956,344	-		LRK54_RS18130	0.60	+1.2
3,956,344	-		LRK54_RS18130	0.60	-0.2
3,956,344	-		LRK54_RS18130	0.60	+0.2
3,956,344	-		LRK54_RS18130	0.60	-0.2
3,956,344	-		LRK54_RS18130	0.60	+0.4
3,956,344	-		LRK54_RS18130	0.60	-0.4
3,956,344	-		LRK54_RS18130	0.60	+2.2
3,956,469	+		LRK54_RS18130	0.71	+1.2
3,956,469	+		LRK54_RS18130	0.71	+0.2
3,956,469	+		LRK54_RS18130	0.71	-0.4
3,956,469	+		LRK54_RS18130	0.71	-0.2
3,956,469	+		LRK54_RS18130	0.71	+0.2
3,956,469	+		LRK54_RS18130	0.71	+1.6
3,956,469	+		LRK54_RS18130	0.71	-0.1
3,956,469	+		LRK54_RS18130	0.71	-1.5
3,956,469	+		LRK54_RS18130	0.71	+0.2
3,956,469	+		LRK54_RS18130	0.71	-0.2
3,956,469	+		LRK54_RS18130	0.71	-0.5
3,956,470	-		LRK54_RS18130	0.71	+0.6
3,956,470	-		LRK54_RS18130	0.71	-0.4
3,956,470	-		LRK54_RS18130	0.71	-0.8
3,956,470	-		LRK54_RS18130	0.71	+0.0
3,956,470	-		LRK54_RS18130	0.71	-0.0
3,956,470	-		LRK54_RS18130	0.71	+0.2
3,956,470	-		LRK54_RS18130	0.71	-0.8
3,956,470	-		LRK54_RS18130	0.71	+0.2
3,956,470	-		LRK54_RS18130	0.71	-1.2
3,956,470	-		LRK54_RS18130	0.71	+1.2
3,956,470	-		LRK54_RS18130	0.71	+1.2
3,956,470	-		LRK54_RS18130	0.71	-0.8
3,956,470	-		LRK54_RS18130	0.71	+1.2
3,956,470	-		LRK54_RS18130	0.71	+1.2
3,956,470	-		LRK54_RS18130	0.71	+0.4
3,956,470	-		LRK54_RS18130	0.71	-1.4
3,956,470	-		LRK54_RS18130	0.71	+1.2
3,956,470	-		LRK54_RS18130	0.71	+0.2
3,956,470	-		LRK54_RS18130	0.71	+1.2
3,956,470	-		LRK54_RS18130	0.71	+1.2
3,956,470	-		LRK54_RS18130	0.71	+0.4
3,956,470	-		LRK54_RS18130	0.71	-1.6
3,956,733	+				-0.4
3,956,733	+				+1.2
3,956,733	+				-1.6
3,956,733	+				+1.2
3,956,733	+				+1.7
3,956,733	+				-1.2
3,956,733	+				-1.2
3,956,733	+				-0.8
3,956,733	+				-0.7
3,956,733	+				-1.4
3,956,733	+				-1.1
3,956,733	+				+0.2
3,956,733	+				-1.5
3,956,733	+				-0.6
3,956,733	+				-2.0
3,956,733	+				-0.8
3,956,733	+				-0.5
3,956,733	+				+1.9
3,956,733	+				-1.3
3,956,733	+				-1.2
3,956,733	+				+0.2
3,956,733	+				+1.2
3,956,733	+				-0.8
3,956,733	+				-0.8
3,956,733	+				+1.6
3,956,733	+				-0.4
3,956,733	+				-1.2
3,956,733	+				+0.2
3,956,733	+				+0.2
3,956,733	+				-0.6
3,956,733	+				-0.4
3,956,733	+				-1.7
3,956,733	+				+0.7
3,956,733	+				-1.6
3,956,733	+				+2.2
3,956,733	+				-1.2
3,956,733	+				+1.2
3,956,733	+				+0.2
3,956,733	+				+1.2
3,956,733	+				-1.6
3,956,733	+				+2.2
3,956,733	+				+0.2
3,956,733	+				-1.6
3,956,733	+				+0.6
3,956,733	+				+0.2
3,956,733	+				-1.3
3,956,733	+				-0.4
3,956,733	+				+1.2
3,956,733	+				-0.8
3,956,733	+				+1.2
3,956,733	+				-0.4
3,956,733	+				-0.4
3,956,733	+				+0.6
3,956,733	+				-0.3
3,956,733	+				-0.5
3,956,733	+				-0.3
3,956,733	+				-1.6
3,956,733	+				-0.3
3,956,733	+				-1.0
3,956,733	+				+1.2
3,956,733	+				-1.8
3,956,733	+				-0.8
3,956,733	+				-0.6
3,956,733	+				-0.3
3,956,733	+				-1.3
3,956,733	+				-0.4
3,956,733	+				-0.3
3,956,733	+				-0.8
3,956,733	+				-0.4
3,956,733	+				-1.2
3,956,733	+				-0.8
3,956,733	+				-2.0
3,956,733	+				+0.7
3,956,733	+				-0.8
3,956,733	+				-1.2
3,956,733	+				-0.4
3,956,733	+				+0.2
3,956,733	+				+0.3
3,956,733	+				-1.2
3,956,733	+				-0.5
3,956,734	-				-0.4
3,956,734	-				-0.8
3,956,734	-				-1.4
3,956,734	-				+0.7
3,956,734	-				+0.2
3,956,734	-				+1.2
3,956,734	-				+0.7
3,956,734	-				-0.4
3,956,734	-				+1.6
3,956,734	-				+0.2
3,956,734	-				+0.2
3,956,734	-				+1.7
3,956,734	-				+1.2
3,956,734	-				-0.2
3,956,734	-				+0.2
3,956,734	-				+0.4
3,956,734	-				+1.2
3,956,734	-				+0.2
3,956,734	-				-1.5
3,956,734	-				+1.9
3,956,734	-				-1.2
3,956,734	-				-0.4
3,956,734	-				-0.4
3,956,734	-				+1.2
3,956,734	-				-0.4
3,956,734	-				-0.8
3,956,734	-				-0.8
3,956,734	-				-0.6
3,956,734	-				-0.8
3,956,734	-				+1.2
3,956,734	-				-0.0
3,956,734	-				-1.3
3,956,734	-				+0.2
3,956,734	-				-0.6
3,956,734	-				+1.2
3,956,734	-				-1.3
3,956,734	-				-0.4
3,956,734	-				+0.2
3,956,734	-				+0.6
3,956,734	-				+0.4
3,956,734	-				+1.2
3,956,734	-				-1.2
3,956,734	-				-0.3
3,956,734	-				+0.7
3,956,734	-				+1.2
3,956,734	-				+0.7
3,956,734	-				-0.3
3,956,734	-				-2.4
3,956,734	-				+0.6
3,956,734	-				-0.7
3,956,734	-				+1.2
3,956,734	-				+1.2
3,956,734	-				+1.2
3,956,734	-				-1.2
3,956,734	-				-0.8
3,956,734	-				+0.2
3,957,002	+				+1.2
3,957,002	+				+1.2
3,957,002	+				-0.8
3,957,002	+				+0.2
3,957,003	-				+0.8
3,957,003	-				+0.2
3,957,076	+		LRK54_RS18135	0.20	-0.4
3,957,112	+		LRK54_RS18135	0.29	-0.8
3,957,112	+		LRK54_RS18135	0.29	-0.6
3,957,112	+		LRK54_RS18135	0.29	+0.6
3,957,112	+		LRK54_RS18135	0.29	-1.2
3,957,112	+		LRK54_RS18135	0.29	+1.2
3,957,112	+		LRK54_RS18135	0.29	-1.3
3,957,112	+		LRK54_RS18135	0.29	+0.4
3,957,112	+		LRK54_RS18135	0.29	-1.2
3,957,112	+		LRK54_RS18135	0.29	-0.4
3,957,113	-		LRK54_RS18135	0.29	+1.2
3,957,113	-		LRK54_RS18135	0.29	+2.2
3,957,113	-		LRK54_RS18135	0.29	+1.2
3,957,113	-		LRK54_RS18135	0.29	+0.2
3,957,113	-		LRK54_RS18135	0.29	-0.3
3,957,113	-		LRK54_RS18135	0.29	+0.2
3,957,113	-		LRK54_RS18135	0.29	-0.4
3,957,113	-		LRK54_RS18135	0.29	-0.8
3,957,113	-		LRK54_RS18135	0.29	+0.2
3,957,113	-		LRK54_RS18135	0.29	-0.2
3,957,113	-		LRK54_RS18135	0.29	-1.8
3,957,113	-		LRK54_RS18135	0.29	-1.2
3,957,113	-		LRK54_RS18135	0.29	-0.1
3,957,113	-		LRK54_RS18135	0.29	-1.2
3,957,199	+		LRK54_RS18135	0.51	-0.6
3,957,199	+		LRK54_RS18135	0.51	+0.2
3,957,199	+		LRK54_RS18135	0.51	+0.2
3,957,200	-		LRK54_RS18135	0.51	+0.0
3,957,259	+		LRK54_RS18135	0.65	-1.9
3,957,259	+		LRK54_RS18135	0.65	-0.6
3,957,259	+		LRK54_RS18135	0.65	-1.2
3,957,259	+		LRK54_RS18135	0.65	+0.2
3,957,259	+		LRK54_RS18135	0.65	+1.2
3,957,259	+		LRK54_RS18135	0.65	+0.3
3,957,259	+		LRK54_RS18135	0.65	+1.6
3,957,259	+		LRK54_RS18135	0.65	+0.2
3,957,259	+		LRK54_RS18135	0.65	-1.2
3,957,260	-		LRK54_RS18135	0.66	+0.2
3,957,260	-		LRK54_RS18135	0.66	-0.4
3,957,260	-		LRK54_RS18135	0.66	-0.2
3,957,260	-		LRK54_RS18135	0.66	-1.6
3,957,260	-		LRK54_RS18135	0.66	-1.6
3,957,260	-		LRK54_RS18135	0.66	-0.4
3,957,260	-		LRK54_RS18135	0.66	-1.1
3,957,260	-		LRK54_RS18135	0.66	-0.3
3,957,384	+				-0.2
3,957,384	+				-0.4
3,957,384	+				+0.6
3,957,384	+				-2.3
3,957,384	+				+0.6
3,957,384	+				-0.4
3,957,384	+				+0.2
3,957,384	+				-1.8
3,957,384	+				+2.7
3,957,384	+				-1.2
3,957,384	+				-0.8
3,957,385	-				+0.8
3,957,385	-				+0.9
3,957,385	-				-0.3
3,957,385	-				+0.2
3,957,427	+				+0.6
3,957,427	+				+0.8
3,957,427	+				-0.8
3,957,427	+				+0.2
3,957,427	+				-0.4
3,957,427	+				+0.2
3,957,428	-				-0.0
3,957,428	-				+1.2
3,957,508	+				+1.2
3,957,508	+				-0.4
3,957,508	+				-1.0
3,957,508	+				-0.2
3,957,508	+				+2.2
3,957,508	+				-1.2
3,957,509	-				+0.2
3,957,509	-				-1.2
3,957,509	-				+2.2
3,957,509	-				+0.6
3,957,509	-				-1.0
3,957,509	-				+0.4
3,957,509	-				-1.6
3,957,509	-				-0.8
3,957,509	-				-0.2
3,957,820	+		LRK54_RS18140	0.26	-2.6
3,957,820	+		LRK54_RS18140	0.26	+1.2
3,957,820	+		LRK54_RS18140	0.26	+0.2
3,957,820	+		LRK54_RS18140	0.26	+1.2
3,957,820	+		LRK54_RS18140	0.26	-2.2
3,957,820	+		LRK54_RS18140	0.26	+0.6
3,957,820	+		LRK54_RS18140	0.26	-1.8
3,957,820	+		LRK54_RS18140	0.26	+0.6
3,957,820	+		LRK54_RS18140	0.26	-0.8
3,957,820	+		LRK54_RS18140	0.26	+0.2
3,957,820	+		LRK54_RS18140	0.26	+0.2
3,957,820	+		LRK54_RS18140	0.26	-2.0
3,957,820	+		LRK54_RS18140	0.26	+2.7
3,957,820	+		LRK54_RS18140	0.26	-0.8
3,957,820	+		LRK54_RS18140	0.26	+0.2
3,957,821	-		LRK54_RS18140	0.26	+0.2
3,957,821	-		LRK54_RS18140	0.26	+0.2
3,957,821	-		LRK54_RS18140	0.26	+1.7
3,957,821	-		LRK54_RS18140	0.26	+0.2
3,957,821	-		LRK54_RS18140	0.26	-0.4
3,957,821	-		LRK54_RS18140	0.26	-1.2
3,957,821	-		LRK54_RS18140	0.26	-1.2
3,957,821	-		LRK54_RS18140	0.26	-0.4
3,957,821	-		LRK54_RS18140	0.26	+0.5
3,957,821	-		LRK54_RS18140	0.26	-1.0
3,957,821	-		LRK54_RS18140	0.26	-0.4
3,957,822	+		LRK54_RS18140	0.26	-1.1
3,957,822	+		LRK54_RS18140	0.26	+2.2
3,957,822	+		LRK54_RS18140	0.26	-1.2
3,957,822	+		LRK54_RS18140	0.26	-1.4
3,957,822	+		LRK54_RS18140	0.26	-1.9
3,957,822	+		LRK54_RS18140	0.26	+0.3
3,957,822	+		LRK54_RS18140	0.26	+0.2
3,957,822	+		LRK54_RS18140	0.26	+0.2
3,957,822	+		LRK54_RS18140	0.26	-1.1
3,957,822	+		LRK54_RS18140	0.26	-2.4
3,957,822	+		LRK54_RS18140	0.26	+0.7
3,957,822	+		LRK54_RS18140	0.26	+1.2
3,957,823	-		LRK54_RS18140	0.26	+0.2
3,957,823	-		LRK54_RS18140	0.26	-0.2
3,957,823	-		LRK54_RS18140	0.26	+0.2
3,957,823	-		LRK54_RS18140	0.26	+0.2
3,957,823	-		LRK54_RS18140	0.26	+1.2
3,957,823	-		LRK54_RS18140	0.26	-1.6
3,957,823	-		LRK54_RS18140	0.26	-2.2
3,957,823	-		LRK54_RS18140	0.26	-0.4
3,957,823	-		LRK54_RS18140	0.26	-1.2
3,957,823	-		LRK54_RS18140	0.26	-2.2
3,957,823	-		LRK54_RS18140	0.26	+1.4
3,957,823	-		LRK54_RS18140	0.26	-0.4
3,957,823	-		LRK54_RS18140	0.26	+1.2
3,957,823	-		LRK54_RS18140	0.26	-1.6
3,957,823	-		LRK54_RS18140	0.26	-0.4
3,957,823	-		LRK54_RS18140	0.26	-0.4
3,957,823	-		LRK54_RS18140	0.26	+0.2
3,957,823	-		LRK54_RS18140	0.26	-1.6
3,957,823	-		LRK54_RS18140	0.26	+0.2
3,957,823	-		LRK54_RS18140	0.26	-1.0
3,957,823	-		LRK54_RS18140	0.26	-1.4
3,957,823	-		LRK54_RS18140	0.26	+1.2
3,957,823	-		LRK54_RS18140	0.26	-0.4
3,957,823	-		LRK54_RS18140	0.26	+0.2
3,957,823	-		LRK54_RS18140	0.26	-0.8
3,957,865	+		LRK54_RS18140	0.28	+1.2
3,957,955	+		LRK54_RS18140	0.34	-2.6
3,957,955	+		LRK54_RS18140	0.34	+0.2
3,957,955	+		LRK54_RS18140	0.34	-0.8
3,957,955	+		LRK54_RS18140	0.34	+1.2
3,957,955	+		LRK54_RS18140	0.34	-0.8
3,957,955	+		LRK54_RS18140	0.34	-0.8
3,957,955	+		LRK54_RS18140	0.34	+0.6
3,957,955	+		LRK54_RS18140	0.34	-2.2
3,957,956	-		LRK54_RS18140	0.34	+0.4
3,957,956	-		LRK54_RS18140	0.34	+3.7
3,957,956	-		LRK54_RS18140	0.34	+1.2
3,957,956	-		LRK54_RS18140	0.34	-0.2
3,957,956	-		LRK54_RS18140	0.34	+1.2
3,957,956	-		LRK54_RS18140	0.34	+1.0
3,957,956	-		LRK54_RS18140	0.34	+0.2
3,957,956	-		LRK54_RS18140	0.34	+0.2
3,957,956	-		LRK54_RS18140	0.34	-1.2
3,957,956	-		LRK54_RS18140	0.34	-0.4
3,957,956	-		LRK54_RS18140	0.34	+0.2
3,957,985	+		LRK54_RS18140	0.36	+0.2
3,957,985	+		LRK54_RS18140	0.36	-1.2
3,957,985	+		LRK54_RS18140	0.36	+1.2
3,957,985	+		LRK54_RS18140	0.36	-0.6
3,957,986	-		LRK54_RS18140	0.36	+1.2
3,957,986	-		LRK54_RS18140	0.36	-0.9
3,957,986	-		LRK54_RS18140	0.36	-0.8
3,957,986	-		LRK54_RS18140	0.36	-0.8
3,957,986	-		LRK54_RS18140	0.36	-1.6
3,957,986	-		LRK54_RS18140	0.36	+0.2
3,958,186	+		LRK54_RS18140	0.49	+0.2
3,958,186	+		LRK54_RS18140	0.49	-0.4
3,958,186	+		LRK54_RS18140	0.49	-0.2
3,958,186	+		LRK54_RS18140	0.49	+0.2
3,958,186	+		LRK54_RS18140	0.49	+0.3
3,958,186	+		LRK54_RS18140	0.49	+1.2
3,958,187	-		LRK54_RS18140	0.49	-1.8
3,958,187	-		LRK54_RS18140	0.49	-1.2
3,958,187	-		LRK54_RS18140	0.49	+0.2
3,958,187	-		LRK54_RS18140	0.49	+1.2
3,958,187	-		LRK54_RS18140	0.49	+1.2
3,958,187	-		LRK54_RS18140	0.49	+1.2
3,958,187	-		LRK54_RS18140	0.49	-0.4
3,958,187	-		LRK54_RS18140	0.49	+1.2
3,958,187	-		LRK54_RS18140	0.49	-0.8
3,958,187	-		LRK54_RS18140	0.49	+1.7
3,958,249	+		LRK54_RS18140	0.53	-0.4
3,958,249	+		LRK54_RS18140	0.53	-0.4
3,958,249	+		LRK54_RS18140	0.53	+0.2
3,958,249	+		LRK54_RS18140	0.53	-0.8
3,958,249	+		LRK54_RS18140	0.53	+1.2
3,958,250	-		LRK54_RS18140	0.53	+0.0
3,958,250	-		LRK54_RS18140	0.53	+1.4
3,958,250	-		LRK54_RS18140	0.53	-1.4
3,958,250	-		LRK54_RS18140	0.53	+0.4
3,958,309	+		LRK54_RS18140	0.57	-0.6
3,958,309	+		LRK54_RS18140	0.57	-0.8
3,958,309	+		LRK54_RS18140	0.57	+1.2
3,958,309	+		LRK54_RS18140	0.57	-1.0
3,958,309	+		LRK54_RS18140	0.57	-1.4
3,958,310	-		LRK54_RS18140	0.57	-0.4
3,958,310	-		LRK54_RS18140	0.57	+1.2
3,958,310	-		LRK54_RS18140	0.57	-1.6