Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18120

Experiment: 2B-T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2B-T2
3,952,129	+		LRK54_RS18115	0.31	-0.8
3,952,129	+		LRK54_RS18115	0.31	-1.2
3,952,129	+		LRK54_RS18115	0.31	-0.4
3,952,129	+		LRK54_RS18115	0.31	+1.2
3,952,130	-		LRK54_RS18115	0.31	-0.7
3,952,130	-		LRK54_RS18115	0.31	+1.2
3,952,130	-		LRK54_RS18115	0.31	+0.7
3,952,130	-		LRK54_RS18115	0.31	+0.6
3,952,130	-		LRK54_RS18115	0.31	+1.2
3,952,357	+		LRK54_RS18115	0.52	-1.2
3,952,357	+		LRK54_RS18115	0.52	+0.4
3,952,357	+		LRK54_RS18115	0.52	-0.8
3,952,357	+		LRK54_RS18115	0.52	-1.0
3,952,357	+		LRK54_RS18115	0.52	-1.2
3,952,357	+		LRK54_RS18115	0.52	-0.4
3,952,357	+		LRK54_RS18115	0.52	+0.2
3,952,357	+		LRK54_RS18115	0.52	-0.8
3,952,357	+		LRK54_RS18115	0.52	+2.2
3,952,357	+		LRK54_RS18115	0.52	+1.2
3,952,358	-		LRK54_RS18115	0.52	-0.8
3,952,358	-		LRK54_RS18115	0.52	+0.2
3,952,358	-		LRK54_RS18115	0.52	+0.2
3,952,358	-		LRK54_RS18115	0.52	-0.8
3,952,358	-		LRK54_RS18115	0.52	-1.2
3,952,378	+		LRK54_RS18115	0.54	-2.4
3,952,378	+		LRK54_RS18115	0.54	+1.2
3,952,378	+		LRK54_RS18115	0.54	+0.6
3,952,378	+		LRK54_RS18115	0.54	-0.5
3,952,378	+		LRK54_RS18115	0.54	-0.6
3,952,378	+		LRK54_RS18115	0.54	+2.2
3,952,379	-		LRK54_RS18115	0.54	-0.8
3,952,379	-		LRK54_RS18115	0.54	-1.0
3,952,379	-		LRK54_RS18115	0.54	-0.1
3,952,379	-		LRK54_RS18115	0.54	+1.2
3,952,379	-		LRK54_RS18115	0.54	-1.4
3,952,379	-		LRK54_RS18115	0.54	+0.2
3,952,379	-		LRK54_RS18115	0.54	-0.4
3,952,379	-		LRK54_RS18115	0.54	-0.4
3,952,379	-		LRK54_RS18115	0.54	+1.2
3,952,430	+		LRK54_RS18115	0.59	-1.4
3,952,431	-		LRK54_RS18115	0.59	+1.2
3,952,462	+		LRK54_RS18115	0.62	+0.2
3,952,462	+		LRK54_RS18115	0.62	-0.4
3,952,462	+		LRK54_RS18115	0.62	+1.7
3,952,463	-		LRK54_RS18115	0.62	+1.2
3,952,463	-		LRK54_RS18115	0.62	-0.1
3,952,557	+		LRK54_RS18115	0.70	-0.8
3,952,557	+		LRK54_RS18115	0.70	+0.3
3,952,558	-		LRK54_RS18115	0.71	-0.8
3,952,747	+		LRK54_RS18115	0.88	-1.7
3,952,747	+		LRK54_RS18115	0.88	-0.4
3,952,747	+		LRK54_RS18115	0.88	+0.4
3,952,747	+		LRK54_RS18115	0.88	+0.2
3,952,747	+		LRK54_RS18115	0.88	+0.2
3,952,747	+		LRK54_RS18115	0.88	-0.4
3,952,747	+		LRK54_RS18115	0.88	+1.2
3,952,747	+		LRK54_RS18115	0.88	+0.2
3,952,747	+		LRK54_RS18115	0.88	+0.4
3,952,747	+		LRK54_RS18115	0.88	+2.2
3,952,747	+		LRK54_RS18115	0.88	-0.9
3,952,747	+		LRK54_RS18115	0.88	+0.0
3,952,747	+		LRK54_RS18115	0.88	+0.4
3,952,747	+		LRK54_RS18115	0.88	+0.7
3,952,747	+		LRK54_RS18115	0.88	+2.2
3,952,747	+		LRK54_RS18115	0.88	-0.3
3,952,747	+		LRK54_RS18115	0.88	-1.6
3,952,747	+		LRK54_RS18115	0.88	-0.8
3,952,747	+		LRK54_RS18115	0.88	-0.8
3,952,747	+		LRK54_RS18115	0.88	-0.4
3,952,747	+		LRK54_RS18115	0.88	-0.8
3,952,748	-		LRK54_RS18115	0.88	-0.8
3,952,748	-		LRK54_RS18115	0.88	-0.6
3,952,748	-		LRK54_RS18115	0.88	+1.2
3,952,748	-		LRK54_RS18115	0.88	-0.5
3,952,748	-		LRK54_RS18115	0.88	-0.3
3,952,748	-		LRK54_RS18115	0.88	-2.0
3,952,748	-		LRK54_RS18115	0.88	-0.2
3,952,748	-		LRK54_RS18115	0.88	-1.2
3,952,748	-		LRK54_RS18115	0.88	-0.4
3,952,748	-		LRK54_RS18115	0.88	-0.8
3,952,748	-		LRK54_RS18115	0.88	+0.2
3,952,748	-		LRK54_RS18115	0.88	+0.2
3,952,771	+				-0.1
3,952,771	+				+2.2
3,952,771	+				+0.2
3,952,771	+				+2.2
3,952,771	+				-0.6
3,952,771	+				-1.0
3,952,772	-				-0.5
3,952,772	-				+0.2
3,952,772	-				+0.3
3,952,772	-				-0.7
3,952,772	-				-0.4
3,952,772	-				-1.6
3,952,914	+				+1.2
3,952,914	+				-0.4
3,952,914	+				+0.2
3,952,914	+				-0.3
3,952,914	+				+0.2
3,952,915	-				+1.2
3,952,915	-				+0.6
3,952,915	-				-0.5
3,952,915	-				+1.2
3,952,915	-				+1.2
3,952,915	-				-1.6
3,952,915	-				+1.2
3,952,915	-				-1.6
3,952,915	-				+1.2
3,952,915	-				-0.1
3,952,915	-				+1.2
3,952,915	-				-0.4
3,952,915	-				-0.4
3,953,178	+		LRK54_RS18120	0.20	+1.4
3,953,178	+		LRK54_RS18120	0.20	+1.2
3,953,178	+		LRK54_RS18120	0.20	+0.2
3,953,178	+		LRK54_RS18120	0.20	-0.4
3,953,178	+		LRK54_RS18120	0.20	+0.2
3,953,178	+		LRK54_RS18120	0.20	-0.1
3,953,178	+		LRK54_RS18120	0.20	+1.2
3,953,179	-		LRK54_RS18120	0.20	-0.1
3,953,179	-		LRK54_RS18120	0.20	-0.3
3,953,179	-		LRK54_RS18120	0.20	+0.2
3,953,179	-		LRK54_RS18120	0.20	+0.2
3,953,179	-		LRK54_RS18120	0.20	+0.2
3,953,179	-		LRK54_RS18120	0.20	-0.2
3,953,179	-		LRK54_RS18120	0.20	+0.2
3,953,179	-		LRK54_RS18120	0.20	+0.5
3,953,205	+		LRK54_RS18120	0.24	-0.8
3,953,205	+		LRK54_RS18120	0.24	-0.4
3,953,205	+		LRK54_RS18120	0.24	-0.4
3,953,205	+		LRK54_RS18120	0.24	+1.8
3,953,205	+		LRK54_RS18120	0.24	-1.2
3,953,205	+		LRK54_RS18120	0.24	-1.2
3,953,205	+		LRK54_RS18120	0.24	+1.2
3,953,205	+		LRK54_RS18120	0.24	-2.8
3,953,205	+		LRK54_RS18120	0.24	-0.4
3,953,205	+		LRK54_RS18120	0.24	+1.2
3,953,205	+		LRK54_RS18120	0.24	+1.2
3,953,205	+		LRK54_RS18120	0.24	+0.2
3,953,205	+		LRK54_RS18120	0.24	-0.8
3,953,205	+		LRK54_RS18120	0.24	+0.2
3,953,205	+		LRK54_RS18120	0.24	-1.6
3,953,205	+		LRK54_RS18120	0.24	-0.0
3,953,205	+		LRK54_RS18120	0.24	+0.6
3,953,205	+		LRK54_RS18120	0.24	-1.8
3,953,205	+		LRK54_RS18120	0.24	+1.2
3,953,205	+		LRK54_RS18120	0.24	-0.4
3,953,205	+		LRK54_RS18120	0.24	+1.2
3,953,205	+		LRK54_RS18120	0.24	-1.4
3,953,205	+		LRK54_RS18120	0.24	+2.5
3,953,205	+		LRK54_RS18120	0.24	-2.0
3,953,205	+		LRK54_RS18120	0.24	+1.2
3,953,205	+		LRK54_RS18120	0.24	-0.8
3,953,205	+		LRK54_RS18120	0.24	+0.6
3,953,205	+		LRK54_RS18120	0.24	-0.8
3,953,205	+		LRK54_RS18120	0.24	-1.3
3,953,205	+		LRK54_RS18120	0.24	+0.9
3,953,205	+		LRK54_RS18120	0.24	-0.7
3,953,205	+		LRK54_RS18120	0.24	-0.4
3,953,205	+		LRK54_RS18120	0.24	-0.4
3,953,205	+		LRK54_RS18120	0.24	+1.2
3,953,205	+		LRK54_RS18120	0.24	-1.2
3,953,205	+		LRK54_RS18120	0.24	+2.2
3,953,205	+		LRK54_RS18120	0.24	-1.1
3,953,205	+		LRK54_RS18120	0.24	+1.7
3,953,205	+		LRK54_RS18120	0.24	+0.2
3,953,205	+		LRK54_RS18120	0.24	-1.6
3,953,205	+		LRK54_RS18120	0.24	+0.2
3,953,205	+		LRK54_RS18120	0.24	+0.2
3,953,205	+		LRK54_RS18120	0.24	-0.5
3,953,205	+		LRK54_RS18120	0.24	-0.4
3,953,205	+		LRK54_RS18120	0.24	-0.8
3,953,206	-		LRK54_RS18120	0.24	+0.6
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-0.2
3,953,206	-		LRK54_RS18120	0.24	+2.2
3,953,206	-		LRK54_RS18120	0.24	-0.4
3,953,206	-		LRK54_RS18120	0.24	-0.4
3,953,206	-		LRK54_RS18120	0.24	-0.4
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-0.4
3,953,206	-		LRK54_RS18120	0.24	+2.2
3,953,206	-		LRK54_RS18120	0.24	-0.8
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-0.6
3,953,206	-		LRK54_RS18120	0.24	-0.7
3,953,206	-		LRK54_RS18120	0.24	-0.8
3,953,206	-		LRK54_RS18120	0.24	+0.6
3,953,206	-		LRK54_RS18120	0.24	-1.0
3,953,206	-		LRK54_RS18120	0.24	+0.6
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-2.0
3,953,206	-		LRK54_RS18120	0.24	-0.0
3,953,206	-		LRK54_RS18120	0.24	+0.4
3,953,206	-		LRK54_RS18120	0.24	+3.0
3,953,206	-		LRK54_RS18120	0.24	-1.4
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-1.8
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-1.3
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-0.4
3,953,206	-		LRK54_RS18120	0.24	-0.6
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	-1.8
3,953,206	-		LRK54_RS18120	0.24	+0.2
3,953,206	-		LRK54_RS18120	0.24	+0.8
3,953,206	-		LRK54_RS18120	0.24	-1.0
3,953,206	-		LRK54_RS18120	0.24	-1.0
3,953,206	-		LRK54_RS18120	0.24	-0.2
3,953,206	-		LRK54_RS18120	0.24	-0.4
3,953,427	+		LRK54_RS18120	0.56	-0.3
3,953,427	+		LRK54_RS18120	0.56	+1.2
3,953,427	+		LRK54_RS18120	0.56	+1.2
3,953,427	+		LRK54_RS18120	0.56	+0.2
3,953,427	+		LRK54_RS18120	0.56	-0.4
3,953,427	+		LRK54_RS18120	0.56	-2.3
3,953,427	+		LRK54_RS18120	0.56	+1.2
3,953,427	+		LRK54_RS18120	0.56	+1.7
3,953,427	+		LRK54_RS18120	0.56	-0.5
3,953,428	-		LRK54_RS18120	0.56	+0.2
3,953,428	-		LRK54_RS18120	0.56	+1.2
3,953,428	-		LRK54_RS18120	0.56	+0.8
3,953,428	-		LRK54_RS18120	0.56	-0.8
3,953,428	-		LRK54_RS18120	0.56	-0.3
3,953,428	-		LRK54_RS18120	0.56	+2.2
3,953,428	-		LRK54_RS18120	0.56	+1.2
3,953,428	-		LRK54_RS18120	0.56	+0.2
3,953,428	-		LRK54_RS18120	0.56	+1.2
3,953,428	-		LRK54_RS18120	0.56	+1.2
3,953,428	-		LRK54_RS18120	0.56	+0.9
3,953,428	-		LRK54_RS18120	0.56	+1.2
3,953,538	+		LRK54_RS18120	0.72	+1.2
3,953,538	+		LRK54_RS18120	0.72	-1.0
3,953,538	+		LRK54_RS18120	0.72	-0.8
3,953,538	+		LRK54_RS18120	0.72	-1.6
3,953,538	+		LRK54_RS18120	0.72	-0.4
3,953,538	+		LRK54_RS18120	0.72	-0.6
3,953,538	+		LRK54_RS18120	0.72	-0.3
3,953,538	+		LRK54_RS18120	0.72	-0.7
3,953,538	+		LRK54_RS18120	0.72	+0.2
3,953,538	+		LRK54_RS18120	0.72	-0.4
3,953,538	+		LRK54_RS18120	0.72	-1.6
3,953,538	+		LRK54_RS18120	0.72	-0.8
3,953,538	+		LRK54_RS18120	0.72	+0.7
3,953,538	+		LRK54_RS18120	0.72	-1.2
3,953,538	+		LRK54_RS18120	0.72	+1.2
3,953,538	+		LRK54_RS18120	0.72	+0.2
3,953,538	+		LRK54_RS18120	0.72	+0.7
3,953,538	+		LRK54_RS18120	0.72	+1.2
3,953,538	+		LRK54_RS18120	0.72	-0.8
3,953,538	+		LRK54_RS18120	0.72	-0.4
3,953,538	+		LRK54_RS18120	0.72	+0.6
3,953,538	+		LRK54_RS18120	0.72	-1.2
3,953,538	+		LRK54_RS18120	0.72	-0.7
3,953,538	+		LRK54_RS18120	0.72	+1.2
3,953,538	+		LRK54_RS18120	0.72	+0.7
3,953,538	+		LRK54_RS18120	0.72	-0.7
3,953,538	+		LRK54_RS18120	0.72	+0.2
3,953,538	+		LRK54_RS18120	0.72	-2.9
3,953,538	+		LRK54_RS18120	0.72	-0.4
3,953,538	+		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	-2.5
3,953,539	-		LRK54_RS18120	0.72	+0.2
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	-0.8
3,953,539	-		LRK54_RS18120	0.72	+0.2
3,953,539	-		LRK54_RS18120	0.72	-1.0
3,953,539	-		LRK54_RS18120	0.72	+0.7
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	-0.5
3,953,539	-		LRK54_RS18120	0.72	-1.4
3,953,539	-		LRK54_RS18120	0.72	-1.6
3,953,539	-		LRK54_RS18120	0.72	-1.0
3,953,539	-		LRK54_RS18120	0.72	-0.8
3,953,539	-		LRK54_RS18120	0.72	+0.6
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	-1.5
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	+0.2
3,953,539	-		LRK54_RS18120	0.72	-0.1
3,953,539	-		LRK54_RS18120	0.72	+1.2
3,953,539	-		LRK54_RS18120	0.72	+0.2
3,953,539	-		LRK54_RS18120	0.72	-1.2
3,953,539	-		LRK54_RS18120	0.72	-0.6
3,953,539	-		LRK54_RS18120	0.72	-0.8
3,953,539	-		LRK54_RS18120	0.72	-0.7
3,953,612	+		LRK54_RS18120	0.82	+0.5
3,953,613	-		LRK54_RS18120	0.82	+2.2
3,953,652	+		LRK54_RS18120	0.88	+0.2
3,953,787	+				+0.7
3,953,787	+				-1.4
3,953,787	+				-0.4
3,953,787	+				+0.2
3,953,787	+				+1.5
3,953,787	+				+1.2
3,953,787	+				+0.3
3,953,787	+				+1.2
3,953,787	+				+1.2
3,953,787	+				-2.3
3,953,787	+				+0.6
3,953,787	+				+0.2
3,953,787	+				+0.2
3,953,787	+				+1.7
3,953,787	+				-0.6
3,953,787	+				+1.2
3,953,787	+				+1.2
3,953,787	+				-0.4
3,953,787	+				-0.6
3,953,787	+				+0.2
3,953,787	+				+0.0
3,953,787	+				+1.2
3,953,787	+				+2.2
3,953,787	+				-0.6
3,953,787	+				+1.2
3,953,787	+				+1.2
3,953,787	+				+3.2
3,953,787	+				-0.4
3,953,787	+				-1.2
3,953,787	+				-0.4
3,953,788	-				+0.2
3,953,788	-				+1.2
3,953,788	-				+1.2
3,953,788	-				-0.7
3,953,788	-				+1.2
3,953,788	-				-1.8
3,953,788	-				-1.4
3,953,788	-				+0.2
3,953,788	-				-2.4
3,953,788	-				-3.1
3,953,788	-				+1.2
3,953,788	-				-2.0
3,953,788	-				-0.2
3,953,788	-				-0.4
3,953,788	-				-1.7
3,953,788	-				-1.5
3,953,788	-				-0.8
3,953,788	-				-0.9
3,953,788	-				+1.7
3,953,788	-				-1.4
3,953,788	-				-0.8
3,953,788	-				-0.4
3,953,788	-				-1.3
3,953,788	-				-1.6
3,953,788	-				-1.2
3,953,788	-				-1.2
3,953,794	-				+1.2
3,953,875	+				-0.2
3,953,875	+				-0.2
3,953,875	+				-1.3
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3,953,912	+				+2.0
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3,954,059	+		LRK54_RS18125	0.13	-0.3
3,954,059	+		LRK54_RS18125	0.13	-2.0
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3,954,059	+		LRK54_RS18125	0.13	+0.4
3,954,059	+		LRK54_RS18125	0.13	+1.2
3,954,059	+		LRK54_RS18125	0.13	-0.4
3,954,059	+		LRK54_RS18125	0.13	-0.8
3,954,059	+		LRK54_RS18125	0.13	+1.2
3,954,059	+		LRK54_RS18125	0.13	+0.5
3,954,059	+		LRK54_RS18125	0.13	-0.7
3,954,059	+		LRK54_RS18125	0.13	+0.3
3,954,059	+		LRK54_RS18125	0.13	+1.2
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3,954,060	-		LRK54_RS18125	0.13	-1.0
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3,954,060	-		LRK54_RS18125	0.13	-0.0
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3,954,060	-		LRK54_RS18125	0.13	+1.2
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3,954,060	-		LRK54_RS18125	0.13	-0.4
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3,954,060	-		LRK54_RS18125	0.13	-0.4
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3,954,079	+		LRK54_RS18125	0.14	-0.4
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3,954,079	+		LRK54_RS18125	0.14	-0.4
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3,954,080	-		LRK54_RS18125	0.14	-0.3
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3,954,134	+		LRK54_RS18125	0.18	-1.2
3,954,134	+		LRK54_RS18125	0.18	+0.6
3,954,134	+		LRK54_RS18125	0.18	-0.7
3,954,134	+		LRK54_RS18125	0.18	+0.2
3,954,134	+		LRK54_RS18125	0.18	-1.4
3,954,134	+		LRK54_RS18125	0.18	-0.4
3,954,134	+		LRK54_RS18125	0.18	-0.8
3,954,134	+		LRK54_RS18125	0.18	+0.6
3,954,134	+		LRK54_RS18125	0.18	+0.9
3,954,134	+		LRK54_RS18125	0.18	+1.2
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3,954,135	-		LRK54_RS18125	0.18	-0.1
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3,954,135	-		LRK54_RS18125	0.18	-0.3
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3,954,135	-		LRK54_RS18125	0.18	-0.8
3,954,166	+		LRK54_RS18125	0.20	-1.0
3,954,166	+		LRK54_RS18125	0.20	+1.2
3,954,166	+		LRK54_RS18125	0.20	+0.7
3,954,166	+		LRK54_RS18125	0.20	-1.2
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3,954,167	-		LRK54_RS18125	0.20	-1.6
3,954,167	-		LRK54_RS18125	0.20	-0.4
3,954,167	-		LRK54_RS18125	0.20	+0.4
3,954,535	+		LRK54_RS18125	0.43	+0.6
3,954,535	+		LRK54_RS18125	0.43	-0.7
3,954,535	+		LRK54_RS18125	0.43	-1.6
3,954,535	+		LRK54_RS18125	0.43	-1.1
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3,954,535	+		LRK54_RS18125	0.43	+1.2
3,954,535	+		LRK54_RS18125	0.43	-1.2
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3,954,536	-		LRK54_RS18125	0.43	+0.2
3,954,536	-		LRK54_RS18125	0.43	+1.7
3,954,610	+		LRK54_RS18125	0.48	-0.8
3,954,610	+		LRK54_RS18125	0.48	-1.3
3,954,610	+		LRK54_RS18125	0.48	+0.2
3,954,611	-		LRK54_RS18125	0.48	-1.2
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3,954,611	-		LRK54_RS18125	0.48	+0.2
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3,954,611	-		LRK54_RS18125	0.48	-1.4
3,954,611	-		LRK54_RS18125	0.48	-0.4
3,954,611	-		LRK54_RS18125	0.48	-0.3
3,954,611	-		LRK54_RS18125	0.48	+0.7
3,954,736	+		LRK54_RS18125	0.56	-1.0
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3,954,737	-		LRK54_RS18125	0.56	+1.2
3,954,737	-		LRK54_RS18125	0.56	-0.9
3,954,737	-		LRK54_RS18125	0.56	-0.8